Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:13:52 (2751225): wrapper (7.7.26015): starting
19:13:52 (2751225): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:13:52] Arguments: --nthreads 8
[2025-11-26 19:13:52] Threads: 8
[2025-11-26 19:13:52] Checking for CVMFS
[2025-11-26 19:13:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:13:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:13:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:13:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:13:53] 2.13.3.0 9239 30709 354004 153340 0 614 21292770 32935936 24289 16776704 0 115123333 99.511 139045189 37829 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 19:13:53] CVMFS is ok
[2025-11-26 19:13:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:13:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:13:53] Further information can be found at the LHC@home message board.
[2025-11-26 19:13:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:13:53] Checking for apptainer binary...
[2025-11-26 19:13:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:13:53] Running /usr/bin/apptainer --version
[2025-11-26 19:13:53] apptainer version 1.4.4-1.el9
[2025-11-26 19:13:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:13:54] c6-6-39-3.aglt2.org
[2025-11-26 19:13:54] apptainer works
[2025-11-26 19:13:54] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:13:54] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:13:54] Starting ATLAS job with PandaID=6898039283
[2025-11-26 19:13:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:51:06]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:51:06] 2025-11-27 19:50:19,895 | INFO     | time since job start (70530s) is within the limit (172800.0s)
[2025-11-27 14:51:06] 2025-11-27 19:50:21,906 | INFO     | time since job start (70532s) is within the limit (172800.0s)
[2025-11-27 14:51:06] 2025-11-27 19:50:22,162 | INFO     | monitor loop #4427: job 0:6898039283 is in state 'finished'
[2025-11-27 14:51:06] 2025-11-27 19:50:22,162 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:51:06] 2025-11-27 19:50:23,913 | INFO     | time since job start (70534s) is within the limit (172800.0s)
[2025-11-27 14:51:06] 2025-11-27 19:50:24,681 | INFO     | monitor loop #4428: job 0:6898039283 is in state 'finished'
[2025-11-27 14:51:06] 2025-11-27 19:50:24,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:51:06] 2025-11-27 19:50:26,341 | INFO     | PID=2755675 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:51:06] 2025-11-27 19:50:26,341 | INFO     | .. there are 33 such processes running
[2025-11-27 14:51:06] 2025-11-27 19:50:27,203 | INFO     | monitor loop #4429: job 0:6898039283 is in state 'finished'
[2025-11-27 14:51:06] 2025-11-27 19:50:27,203 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:51:06] 2025-11-27 19:50:27,342 | INFO     | time since job start (70538s) is within the limit (172800.0s)
[2025-11-27 14:51:06] 2025-11-27 19:50:29,358 | INFO     | time since job start (70540s) is within the limit (172800.0s)
[2025-11-27 14:51:06] 2025-11-27 19:50:29,708 | INFO     | monitor loop #4430: job 0:6898039283 is in state 'finished'
[2025-11-27 14:51:06] 2025-11-27 19:50:29,708 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:51:06] 2025-11-27 19:50:30,646 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 14:51:06] 2025-11-27 19:50:30,668 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2927.349321428571
[2025-11-27 14:51:06] 2025-11-27 19:50:30,696 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898039283/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:51:06] 2025-11-27 19:50:30,697 | INFO     | extracted standard info from prmon json
[2025-11-27 14:51:06] 2025-11-27 19:50:30,697 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:51:06] 2025-11-27 19:50:30,697 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:51:06] 2025-11-27 19:50:30,735 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:51:06] 2025-11-27 19:50:30,736 | INFO     | sum of square deviations: 476529526009.78485
[2025-11-27 14:51:06] 2025-11-27 19:50:30,793 | INFO     | sum of deviations: 2869629418901.6616
[2025-11-27 14:51:06] 2025-11-27 19:50:30,794 | INFO     | mean x: 1764237769.1819758
[2025-11-27 14:51:06] 2025-11-27 19:50:30,794 | INFO     | mean y: 2913685.3682842287
[2025-11-27 14:51:06] 2025-11-27 19:50:30,794 | INFO     | intersect: -10621209958.710135
[2025-11-27 14:51:06] 2025-11-27 19:50:30,795 | INFO     | chi2: 17.74133997283053
[2025-11-27 14:51:06] 2025-11-27 19:50:30,797 | INFO     | sum of square deviations: 470362774458.0787
[2025-11-27 14:51:06] 2025-11-27 19:50:30,824 | INFO     | sum of deviations: 3238976439305.3955
[2025-11-27 14:51:06] 2025-11-27 19:50:30,824 | INFO     | mean x: 1764237616.689295
[2025-11-27 14:51:06] 2025-11-27 19:50:30,824 | INFO     | mean y: 2922818.4464751957
[2025-11-27 14:51:06] 2025-11-27 19:50:30,824 | INFO     | intersect: -12145836360.841473
[2025-11-27 14:51:06] 2025-11-27 19:50:30,825 | INFO     | chi2: 14.850518461477732
[2025-11-27 14:51:06] 2025-11-27 19:50:30,826 | INFO     | current chi2=14.850518461477732 (change=16.294268165650763 %)
[2025-11-27 14:51:06] 2025-11-27 19:50:30,826 | INFO     | right removable region: 1148
[2025-11-27 14:51:06] 2025-11-27 19:50:30,827 | INFO     | sum of square deviations: 470361590448.0777
[2025-11-27 14:51:06] 2025-11-27 19:50:30,855 | INFO     | sum of deviations: 2392380254662.445
[2025-11-27 14:51:06] 2025-11-27 19:50:30,856 | INFO     | mean x: 1764237921.689295
[2025-11-27 14:51:06] 2025-11-27 19:50:30,856 | INFO     | mean y: 2925484.085291558
[2025-11-27 14:51:06] 2025-11-27 19:50:30,856 | INFO     | intersect: -8970443205.214811
[2025-11-27 14:51:06] 2025-11-27 19:50:30,857 | INFO     | chi2: 13.432102119601495
[2025-11-27 14:51:06] 2025-11-27 19:50:30,857 | INFO     | current chi2=13.432102119601495 (change=24.289246809025105 %)
[2025-11-27 14:51:06] 2025-11-27 19:50:30,857 | INFO     | left removable region: 10
[2025-11-27 14:51:06] 2025-11-27 19:50:30,858 | INFO     | sum of square deviations: 456981344451.8839
[2025-11-27 14:51:06] 2025-11-27 19:50:30,886 | INFO     | sum of deviations: 2456966586927.607
[2025-11-27 14:51:06] 2025-11-27 19:50:30,886 | INFO     | mean x: 1764237891.2056239
[2025-11-27 14:51:06] 2025-11-27 19:50:30,887 | INFO     | mean y: 2946659.2495606327
[2025-11-27 14:51:06] 2025-11-27 19:50:30,887 | INFO     | intersect: -9482503026.41095
[2025-11-27 14:51:06] 2025-11-27 19:50:30,888 | INFO     | chi2: 6.964514203793256
[2025-11-27 14:51:06] 2025-11-27 19:50:30,888 | INFO     | current memory leak: 5.38 B/s (using 1138 data points, chi2=6.96)
[2025-11-27 14:51:06] 2025-11-27 19:50:30,889 | INFO     | could have reported an average CPU frequency of 2918 MHz (42 samples)
[2025-11-27 14:51:06] 2025-11-27 19:50:30,890 | INFO     | ..............................
[2025-11-27 14:51:06] 2025-11-27 19:50:30,890 | INFO     | . Timing measurements:
[2025-11-27 14:51:06] 2025-11-27 19:50:30,890 | INFO     | . get job = 3 s
[2025-11-27 14:51:06] 2025-11-27 19:50:30,890 | INFO     | . initial setup = 4 s
[2025-11-27 14:51:06] 2025-11-27 19:50:30,890 | INFO     | . payload setup = 29 s
[2025-11-27 14:51:06] 2025-11-27 19:50:30,890 | INFO     | . stage-in = 0 s
[2025-11-27 14:51:06] 2025-11-27 19:50:30,890 | INFO     | . payload execution = 70415 s
[2025-11-27 14:51:06] 2025-11-27 19:50:30,890 | INFO     | . stage-out = 6 s
[2025-11-27 14:51:06] 2025-11-27 19:50:30,890 | INFO     | . log creation = 1 s
[2025-11-27 14:51:06] 2025-11-27 19:50:30,890 | INFO     | ..............................
[2025-11-27 14:51:06] 2025-11-27 19:50:31,385 | INFO     | time since job start (70542s) is within the limit (172800.0s)
[2025-11-27 14:51:06] 2025-11-27 19:50:31,478 | INFO     | 
[2025-11-27 14:51:06] 2025-11-27 19:50:31,478 | INFO     | job summary report
[2025-11-27 14:51:06] 2025-11-27 19:50:31,478 | INFO     | --------------------------------------------------
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | PanDA job id: 6898039283
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | task id: 47556161
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | errors: (none)
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | pilot state: finished 
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | transexitcode: 0
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | exeerrorcode: 0
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | exeerrordiag: 
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | exitcode: 0
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | exitmsg: OK
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | cpuconsumptiontime: 259193 s
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | nevents: 1000
[2025-11-27 14:51:06] 2025-11-27 19:50:31,479 | INFO     | neventsw: 0
[2025-11-27 14:51:06] 2025-11-27 19:50:31,480 | INFO     | pid: 2764387
[2025-11-27 14:51:06] 2025-11-27 19:50:31,480 | INFO     | pgrp: 2764387
[2025-11-27 14:51:06] 2025-11-27 19:50:31,480 | INFO     | corecount: 8
[2025-11-27 14:51:06] 2025-11-27 19:50:31,480 | INFO     | event service: False
[2025-11-27 14:51:06] 2025-11-27 19:50:31,480 | INFO     | sizes: {0: 2284031, 1: 2284286, 2: 2284314, 12: 2284314, 23: 2284342, 27: 2284632, 34: 2284788, 70446: 2343283, 70453: 2352277, 70455: 2352361, 70485: 2352607}
[2025-11-27 14:51:06] 2025-11-27 19:50:31,480 | INFO     | --------------------------------------------------
[2025-11-27 14:51:06] 2025-11-27 19:50:31,485 | INFO     | 
[2025-11-27 14:51:06] 2025-11-27 19:50:31,485 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 14:51:06] 2025-11-27 19:50:31,563 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,564 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,564 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,564 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,564 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,564 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,564 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,564 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,564 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,565 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,565 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,565 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,565 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,565 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,565 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,565 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,565 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,565 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:51:06] 2025-11-27 19:50:31,565 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,565 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:51:06] 2025-11-27 19:50:31,566 | INFO     | job 6898039283 has completed (purged errors)
[2025-11-27 14:51:06] 2025-11-27 19:50:31,566 | INFO     | overall cleanup function is called
[2025-11-27 14:51:06] 2025-11-27 19:50:32,601 | INFO     | --- collectZombieJob: --- 10, [2764387]
[2025-11-27 14:51:06] 2025-11-27 19:50:32,601 | INFO     | zombie collector waiting for pid 2764387
[2025-11-27 14:51:06] 2025-11-27 19:50:32,601 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:51:06] 2025-11-27 19:50:32,602 | INFO     | collected zombie processes
[2025-11-27 14:51:06] 2025-11-27 19:50:32,602 | INFO     | will attempt to kill all subprocesses of pid=2764387
[2025-11-27 14:51:06] 2025-11-27 19:50:33,945 | INFO     | process IDs to be killed: [2764387] (in reverse order)
[2025-11-27 14:51:06] 2025-11-27 19:50:34,167 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:51:06] 2025-11-27 19:50:34,167 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:51:06] 2025-11-27 19:50:34,199 | INFO     | did not find any defunct processes belonging to 2764387
[2025-11-27 14:51:06] 2025-11-27 19:50:34,215 | INFO     | did not find any defunct processes belonging to 2764387
[2025-11-27 14:51:06] 2025-11-27 19:50:34,258 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:51:06] 2025-11-27 19:50:34,258 | INFO     | ready for new job
[2025-11-27 14:51:06] 2025-11-27 19:50:34,258 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:51:06] 2025-11-27 19:50:34,284 | INFO     | ***************************************
[2025-11-27 14:51:06] 2025-11-27 19:50:34,284 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:51:06] 2025-11-27 19:50:34,284 | INFO     | ***************************************
[2025-11-27 14:51:06] 2025-11-27 19:50:34,284 | INFO     | 
[2025-11-27 14:51:06] 2025-11-27 19:50:34,306 | INFO     | architecture information:
[2025-11-27 14:51:06] 2025-11-27 19:50:34,317 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:51:06] 2025-11-27 19:50:34,421 | INFO     | cat /etc/os-release:
[2025-11-27 14:51:06] NAME="CentOS Linux"
[2025-11-27 14:51:06] VERSION="7 (Core)"
[2025-11-27 14:51:06] ID="centos"
[2025-11-27 14:51:06] ID_LIKE="rhel fedora"
[2025-11-27 14:51:06] VERSION_ID="7"
[2025-11-27 14:51:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:51:06] ANSI_COLOR="0;31"
[2025-11-27 14:51:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:51:06] HOME_URL="https://www.centos.org/"
[2025-11-27 14:51:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:51:06] 
[2025-11-27 14:51:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:51:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:51:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:51:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:51:06] 
[2025-11-27 14:51:06] 2025-11-27 19:50:34,421 | INFO     | ***************************************
[2025-11-27 14:51:06] 2025-11-27 19:50:34,925 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 14:51:06] 2025-11-27 19:50:34,981 | INFO     | sufficient remaining disk space (69826772992 B)
[2025-11-27 14:51:06] 2025-11-27 19:50:34,981 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:51:06] 2025-11-27 19:50:34,982 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:51:06] 2025-11-27 19:50:34,982 | INFO     | update_server=False
[2025-11-27 14:51:06] 2025-11-27 19:50:34,982 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:51:06] 2025-11-27 19:50:34,982 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:51:06] 2025-11-27 19:50:34,986 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:51:06] 2025-11-27 19:50:35,097 | INFO     | all data control threads have been joined
[2025-11-27 14:51:06] 2025-11-27 19:50:35,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:51:06] 2025-11-27 19:50:35,800 | INFO     | aborting loop
[2025-11-27 14:51:06] 2025-11-27 19:50:35,990 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:36,011 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:51:06] 2025-11-27 19:50:36,105 | INFO     | [data] control thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:36,135 | INFO     | all payload control threads have been joined
[2025-11-27 14:51:06] 2025-11-27 19:50:36,255 | INFO     | all job control threads have been joined
[2025-11-27 14:51:06] 2025-11-27 19:50:36,493 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:36,748 | INFO     | [job] validate thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:36,807 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:36,998 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:37,005 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:37,018 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:37,022 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:37,026 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:37,122 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:37,141 | INFO     | [payload] control thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:37,259 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:37,261 | INFO     | [job] control thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:37,457 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:39,003 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:51:06] 2025-11-27 19:50:48,474 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:51:06] 2025-11-27 19:50:49,326 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139968822740800)>', '<ExcThread(monitor, started 139968336877312)>']
[2025-11-27 14:51:06] 2025-11-27 19:50:54,355 | INFO     | all workflow threads have been joined
[2025-11-27 14:51:06] 2025-11-27 19:50:54,355 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:51:06] 2025-11-27 19:50:54,355 | INFO     | traces error code: 0
[2025-11-27 14:51:06] 2025-11-27 19:50:54,355 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:51:06] 2025-11-27 19:51:05,486 | INFO     | PID=2755675 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:51:06] 2025-11-27 19:51:05,487 | INFO     | .. there are 33 such processes running
[2025-11-27 14:51:06] 2025-11-27 19:51:05,487 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:51:06] 2025-11-27 19:51:05,487 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:51:06] 2025-11-27 19:51:05,487 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:51:06] 2025-11-27 19:51:05,487 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:51:06] 2025-11-27 19:51:05,487 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 14:51:06] 2025-11-27 19:51:05,487 | INFO     | [monitor] control thread has ended
[2025-11-27 14:51:06] 2025-11-27 19:51:05,751 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:51:06] 2025-11-27 19:51:05,777 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:51:06] 2025-11-27 19:51:05,797 [wrapper] pilotpid: 2755675
[2025-11-27 14:51:06] 2025-11-27 19:51:05,812 [wrapper] Pilot exit status: 0
[2025-11-27 14:51:06] 2025-11-27 19:51:05,875 [wrapper] pandaids: 6898039283
[2025-11-27 14:51:06] 2025-11-27 19:51:06,009 [wrapper] cleanup supervisor_pilot 2160051 2755676
[2025-11-27 14:51:06] 2025-11-27 19:51:06,022 [wrapper] Test setup, not cleaning
[2025-11-27 14:51:06] 2025-11-27 19:51:06,037 [wrapper] apfmon messages muted
[2025-11-27 14:51:06] 2025-11-27 19:51:06,056 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:51:06] 2025-11-27 19:51:06,076 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:51:06]  *** Error codes and diagnostics ***
[2025-11-27 14:51:06]     "exeErrorCode": 0,
[2025-11-27 14:51:06]     "exeErrorDiag": "",
[2025-11-27 14:51:06]     "pilotErrorCode": 0,
[2025-11-27 14:51:06]     "pilotErrorDiag": "",
[2025-11-27 14:51:06]  *** Listing of results directory ***
[2025-11-27 14:51:06] total 1347104
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:46 queuedata.json
[2025-11-27 14:51:06] -rwx------. 1 boincer umatlas     36292 Nov 25 21:48 runpilot2-wrapper.sh
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:51:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:13 run_atlas
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:13 job.xml
[2025-11-27 14:51:06] -rw-r--r--. 2 boincer umatlas 408720975 Nov 26 19:13 EVNT.47483658._002392.pool.root.1
[2025-11-27 14:51:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:13 start_atlas.sh
[2025-11-27 14:51:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:13 shared
[2025-11-27 14:51:06] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 19:13 input.tar.gz
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:13 boinc_lockfile
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 19:13 pandaJob.out
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas        57 Nov 26 19:13 setup.sh.local
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas    991538 Nov 26 19:14 agis_schedconf.cvmfs.json
[2025-11-27 14:51:06] drwx------. 5 boincer umatlas      4096 Nov 26 19:14 pilot3
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:30 boinc_task_state.xml
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas 943878314 Nov 27 14:48 HITS.47556161._003741.pool.root.1
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas      6844 Nov 27 14:49 init_data.xml
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas      1056 Nov 27 14:49 memory_monitor_summary.json
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:49 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas   2276683 Nov 27 14:49 log.47556161._003741.job.log.tgz.1
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas        95 Nov 27 14:50 pilot_heartbeat.json
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas      8624 Nov 27 14:50 heartbeat.json
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:51 boinc_mmap_file
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas       893 Nov 27 14:51 pilotlog.txt
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas   9178749 Nov 27 14:51 log.47556161._003741.job.log.1
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas       353 Nov 27 14:51 output.list
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:51 wrapper_checkpoint.txt
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:51 runtime_log
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas  11479040 Nov 27 14:51 result.tar.gz
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 14:51 runtime_log.err
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas       661 Nov 27 14:51 fWbMDmlkKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2kMKDmjnXiGo.diag
[2025-11-27 14:51:06] -rw-r--r--. 1 boincer umatlas     21849 Nov 27 14:51 stderr.txt
[2025-11-27 14:51:06] HITS file was successfully produced:
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas 943878314 Nov 27 14:48 shared/HITS.pool.root.1
[2025-11-27 14:51:06]  *** Contents of shared directory: ***
[2025-11-27 14:51:06] total 1332720
[2025-11-27 14:51:06] -rw-r--r--. 2 boincer umatlas 408720975 Nov 26 19:13 ATLAS.root_0
[2025-11-27 14:51:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:13 start_atlas.sh
[2025-11-27 14:51:06] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 19:13 input.tar.gz
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas 943878314 Nov 27 14:48 HITS.pool.root.1
[2025-11-27 14:51:06] -rw-------. 1 boincer umatlas  11479040 Nov 27 14:51 result.tar.gz
14:51:08 (2751225): run_atlas exited; CPU time 261529.996781
14:51:08 (2751225): called boinc_finish(0)

</stderr_txt>
]]>

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