Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:46:49 (2964923): wrapper (7.7.26015): starting
04:46:49 (2964923): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 04:46:49] Arguments: --nthreads 12
[2025-11-27 04:46:49] Threads: 12
[2025-11-27 04:46:49] Checking for CVMFS
[2025-11-27 04:46:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:46:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:46:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:46:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:46:50] 2.13.3.0 9777 7976 92380 153345 0 81 4048653 4097024 1044 130560 0 6088983 99.990 287500 11125 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-11-27 04:46:50] CVMFS is ok
[2025-11-27 04:46:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:46:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:46:50] Further information can be found at the LHC@home message board.
[2025-11-27 04:46:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:46:50] Checking for apptainer binary...
[2025-11-27 04:46:50] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-11-27 04:46:50] apptainer is not installed, using version from CVMFS
[2025-11-27 04:46:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:46:50] pckelar6.cern.ch
[2025-11-27 04:46:50] apptainer works
[2025-11-27 04:46:50] Set ATHENA_PROC_NUMBER=12
[2025-11-27 04:46:50] Set ATHENA_CORE_NUMBER=12
[2025-11-27 04:46:50] Starting ATLAS job with PandaID=6893855641
[2025-11-27 04:46:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:39:28]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:39:28] 2025-11-27 15:38:54,370 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6893855641/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:39:28] 2025-11-27 15:38:54,371 | INFO     | extracted standard info from prmon json
[2025-11-27 16:39:28] 2025-11-27 15:38:54,371 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:39:28] 2025-11-27 15:38:54,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:39:28] 2025-11-27 15:38:54,391 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:39:28] 2025-11-27 15:38:54,392 | INFO     | time since job start (42714s) is within the limit (172800.0s)
[2025-11-27 16:39:28] 2025-11-27 15:38:54,393 | INFO     | sum of square deviations: 106358315350.82716
[2025-11-27 16:39:28] 2025-11-27 15:38:54,410 | INFO     | sum of deviations: 1674876466399.4077
[2025-11-27 16:39:28] 2025-11-27 15:38:54,410 | INFO     | mean x: 1764236571.4842858
[2025-11-27 16:39:28] 2025-11-27 15:38:54,410 | INFO     | mean y: 3610385.2642857144
[2025-11-27 16:39:28] 2025-11-27 15:38:54,410 | INFO     | intersect: -27778686701.648216
[2025-11-27 16:39:28] 2025-11-27 15:38:54,411 | INFO     | chi2: 5.416827225403253
[2025-11-27 16:39:28] 2025-11-27 15:38:54,412 | INFO     | sum of square deviations: 104095655155.94843
[2025-11-27 16:39:28] 2025-11-27 15:38:54,429 | INFO     | sum of deviations: 1933016935710.8994
[2025-11-27 16:39:28] 2025-11-27 15:38:54,429 | INFO     | mean x: 1764236418.9913669
[2025-11-27 16:39:28] 2025-11-27 15:38:54,429 | INFO     | mean y: 3627772.3165467624
[2025-11-27 16:39:28] 2025-11-27 15:38:54,429 | INFO     | intersect: -32757575098.247112
[2025-11-27 16:39:28] 2025-11-27 15:38:54,430 | INFO     | chi2: 2.842682339941363
[2025-11-27 16:39:28] 2025-11-27 15:38:54,430 | INFO     | current chi2=2.842682339941363 (change=47.521266201549544 %)
[2025-11-27 16:39:28] 2025-11-27 15:38:54,432 | INFO     | sum of square deviations: 101865151816.46373
[2025-11-27 16:39:28] 2025-11-27 15:38:54,447 | INFO     | sum of deviations: 1933640182814.333
[2025-11-27 16:39:28] 2025-11-27 15:38:54,448 | INFO     | mean x: 1764236266.4927535
[2025-11-27 16:39:28] 2025-11-27 15:38:54,448 | INFO     | mean y: 3627805.466666667
[2025-11-27 16:39:28] 2025-11-27 15:38:54,448 | INFO     | intersect: -33485726267.408375
[2025-11-27 16:39:28] 2025-11-27 15:38:54,449 | INFO     | chi2: 2.7555002282227985
[2025-11-27 16:39:28] 2025-11-27 15:38:54,449 | INFO     | current chi2=2.7555002282227985 (change=3.0668960261090175 %)
[2025-11-27 16:39:28] 2025-11-27 15:38:54,449 | INFO     | right removable region: 689
[2025-11-27 16:39:28] 2025-11-27 15:38:54,451 | INFO     | sum of square deviations: 104095277322.92943
[2025-11-27 16:39:28] 2025-11-27 15:38:54,467 | INFO     | sum of deviations: 1420252919581.6738
[2025-11-27 16:39:28] 2025-11-27 15:38:54,467 | INFO     | mean x: 1764236723.989928
[2025-11-27 16:39:28] 2025-11-27 15:38:54,467 | INFO     | mean y: 3627517.525179856
[2025-11-27 16:39:28] 2025-11-27 15:38:54,467 | INFO     | intersect: -24067227784.648766
[2025-11-27 16:39:28] 2025-11-27 15:38:54,468 | INFO     | chi2: 3.0533279883712128
[2025-11-27 16:39:28] 2025-11-27 15:38:54,468 | INFO     | current chi2=3.0533279883712128 (change=43.6325387294606 %)
[2025-11-27 16:39:28] 2025-11-27 15:38:54,470 | INFO     | sum of square deviations: 101864735310.42903
[2025-11-27 16:39:28] 2025-11-27 15:38:54,485 | INFO     | sum of deviations: 1344107181679.1528
[2025-11-27 16:39:28] 2025-11-27 15:38:54,486 | INFO     | mean x: 1764236876.489855
[2025-11-27 16:39:28] 2025-11-27 15:38:54,486 | INFO     | mean y: 3632721.8072463768
[2025-11-27 16:39:28] 2025-11-27 15:38:54,486 | INFO     | intersect: -23275507489.44142
[2025-11-27 16:39:28] 2025-11-27 15:38:54,487 | INFO     | chi2: 2.9780117841947
[2025-11-27 16:39:28] 2025-11-27 15:38:54,487 | INFO     | current chi2=2.9780117841947 (change=2.466692227738368 %)
[2025-11-27 16:39:28] 2025-11-27 15:38:54,487 | INFO     | left removable region: 20
[2025-11-27 16:39:28] 2025-11-27 15:38:54,488 | INFO     | sum of square deviations: 92844453664.9986
[2025-11-27 16:39:28] 2025-11-27 15:38:54,503 | INFO     | sum of deviations: 1498340365540.1167
[2025-11-27 16:39:28] 2025-11-27 15:38:54,504 | INFO     | mean x: 1764236845.998505
[2025-11-27 16:39:28] 2025-11-27 15:38:54,504 | INFO     | mean y: 3657558.11509716
[2025-11-27 16:39:28] 2025-11-27 15:38:54,504 | INFO     | intersect: -28467911570.51329
[2025-11-27 16:39:28] 2025-11-27 15:38:54,505 | INFO     | chi2: 0.27840750909928874
[2025-11-27 16:39:28] 2025-11-27 15:38:54,505 | INFO     | current memory leak: 16.14 B/s (using 669 data points, chi2=0.28)
[2025-11-27 16:39:28] 2025-11-27 15:38:54,506 | INFO     | could have reported an average CPU frequency of 2803 MHz (26 samples)
[2025-11-27 16:39:28] 2025-11-27 15:38:54,507 | INFO     | ..............................
[2025-11-27 16:39:28] 2025-11-27 15:38:54,507 | INFO     | . Timing measurements:
[2025-11-27 16:39:28] 2025-11-27 15:38:54,507 | INFO     | . get job = 0 s
[2025-11-27 16:39:28] 2025-11-27 15:38:54,507 | INFO     | . initial setup = 1 s
[2025-11-27 16:39:28] 2025-11-27 15:38:54,507 | INFO     | . payload setup = 8 s
[2025-11-27 16:39:28] 2025-11-27 15:38:54,507 | INFO     | . stage-in = 0 s
[2025-11-27 16:39:28] 2025-11-27 15:38:54,508 | INFO     | . payload execution = 42674 s
[2025-11-27 16:39:28] 2025-11-27 15:38:54,508 | INFO     | . stage-out = 1 s
[2025-11-27 16:39:28] 2025-11-27 15:38:54,508 | INFO     | . log creation = 0 s
[2025-11-27 16:39:28] 2025-11-27 15:38:54,508 | INFO     | ..............................
[2025-11-27 16:39:28] 2025-11-27 15:38:55,071 | INFO     | 
[2025-11-27 16:39:28] 2025-11-27 15:38:55,071 | INFO     | job summary report
[2025-11-27 16:39:28] 2025-11-27 15:38:55,071 | INFO     | --------------------------------------------------
[2025-11-27 16:39:28] 2025-11-27 15:38:55,071 | INFO     | PanDA job id: 6893855641
[2025-11-27 16:39:28] 2025-11-27 15:38:55,071 | INFO     | task id: 47523449
[2025-11-27 16:39:28] 2025-11-27 15:38:55,072 | INFO     | errors: (none)
[2025-11-27 16:39:28] 2025-11-27 15:38:55,072 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:39:28] 2025-11-27 15:38:55,072 | INFO     | pilot state: finished 
[2025-11-27 16:39:28] 2025-11-27 15:38:55,072 | INFO     | transexitcode: 0
[2025-11-27 16:39:28] 2025-11-27 15:38:55,072 | INFO     | exeerrorcode: 0
[2025-11-27 16:39:28] 2025-11-27 15:38:55,072 | INFO     | exeerrordiag: 
[2025-11-27 16:39:28] 2025-11-27 15:38:55,073 | INFO     | exitcode: 0
[2025-11-27 16:39:28] 2025-11-27 15:38:55,073 | INFO     | exitmsg: OK
[2025-11-27 16:39:28] 2025-11-27 15:38:55,073 | INFO     | cpuconsumptiontime: 496235 s
[2025-11-27 16:39:28] 2025-11-27 15:38:55,073 | INFO     | nevents: 1000
[2025-11-27 16:39:28] 2025-11-27 15:38:55,073 | INFO     | neventsw: 0
[2025-11-27 16:39:28] 2025-11-27 15:38:55,073 | INFO     | pid: 2976268
[2025-11-27 16:39:28] 2025-11-27 15:38:55,074 | INFO     | pgrp: 2976268
[2025-11-27 16:39:28] 2025-11-27 15:38:55,074 | INFO     | corecount: 12
[2025-11-27 16:39:28] 2025-11-27 15:38:55,074 | INFO     | event service: False
[2025-11-27 16:39:28] 2025-11-27 15:38:55,074 | INFO     | sizes: {0: 2283436, 1: 2284292, 2: 2284292, 6: 2284582, 12: 2284610, 42687: 2328576, 42690: 2337570, 42691: 2337626, 42697: 2337872}
[2025-11-27 16:39:28] 2025-11-27 15:38:55,074 | INFO     | --------------------------------------------------
[2025-11-27 16:39:28] 2025-11-27 15:38:55,074 | INFO     | 
[2025-11-27 16:39:28] 2025-11-27 15:38:55,075 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-27 16:39:28] 2025-11-27 15:38:55,095 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,095 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,095 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,096 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,096 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,096 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,096 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,096 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,096 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,097 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,097 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,097 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,097 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,097 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,097 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,098 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,098 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,098 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:39:28] 2025-11-27 15:38:55,098 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,098 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:39:28] 2025-11-27 15:38:55,099 | INFO     | job 6893855641 has completed (purged errors)
[2025-11-27 16:39:28] 2025-11-27 15:38:55,099 | INFO     | overall cleanup function is called
[2025-11-27 16:39:28] 2025-11-27 15:38:55,648 | INFO     | PID=2968761 has CPU usage=14.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 16:39:28] 2025-11-27 15:38:55,648 | INFO     | .. there are 2 such processes running
[2025-11-27 16:39:28] 2025-11-27 15:38:56,124 | INFO     | --- collectZombieJob: --- 10, [2976268]
[2025-11-27 16:39:28] 2025-11-27 15:38:56,124 | INFO     | zombie collector waiting for pid 2976268
[2025-11-27 16:39:28] 2025-11-27 15:38:56,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:39:28] 2025-11-27 15:38:56,125 | INFO     | collected zombie processes
[2025-11-27 16:39:28] 2025-11-27 15:38:56,125 | INFO     | will attempt to kill all subprocesses of pid=2976268
[2025-11-27 16:39:28] 2025-11-27 15:38:56,316 | INFO     | process IDs to be killed: [2976268] (in reverse order)
[2025-11-27 16:39:28] 2025-11-27 15:38:56,377 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:39:28] 2025-11-27 15:38:56,378 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:39:28] 2025-11-27 15:38:56,384 | INFO     | did not find any defunct processes belonging to 2976268
[2025-11-27 16:39:28] 2025-11-27 15:38:56,390 | INFO     | did not find any defunct processes belonging to 2976268
[2025-11-27 16:39:28] 2025-11-27 15:38:56,392 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:39:28] 2025-11-27 15:38:56,392 | INFO     | ready for new job
[2025-11-27 16:39:28] 2025-11-27 15:38:56,392 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:39:28] 2025-11-27 15:38:56,396 | INFO     | ***************************************
[2025-11-27 16:39:28] 2025-11-27 15:38:56,396 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:39:28] 2025-11-27 15:38:56,396 | INFO     | ***************************************
[2025-11-27 16:39:28] 2025-11-27 15:38:56,396 | INFO     | 
[2025-11-27 16:39:28] 2025-11-27 15:38:56,398 | INFO     | architecture information:
[2025-11-27 16:39:28] 2025-11-27 15:38:56,398 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:39:28] 2025-11-27 15:38:56,413 | INFO     | cat /etc/os-release:
[2025-11-27 16:39:28] NAME="CentOS Linux"
[2025-11-27 16:39:28] VERSION="7 (Core)"
[2025-11-27 16:39:28] ID="centos"
[2025-11-27 16:39:28] ID_LIKE="rhel fedora"
[2025-11-27 16:39:28] VERSION_ID="7"
[2025-11-27 16:39:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:39:28] ANSI_COLOR="0;31"
[2025-11-27 16:39:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:39:28] HOME_URL="https://www.centos.org/"
[2025-11-27 16:39:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:39:28] 
[2025-11-27 16:39:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:39:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:39:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:39:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:39:28] 
[2025-11-27 16:39:28] 2025-11-27 15:38:56,414 | INFO     | ***************************************
[2025-11-27 16:39:28] 2025-11-27 15:38:56,917 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-27 16:39:28] 2025-11-27 15:38:56,935 | INFO     | sufficient remaining disk space (868153819136 B)
[2025-11-27 16:39:28] 2025-11-27 15:38:56,935 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:39:28] 2025-11-27 15:38:56,935 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:39:28] 2025-11-27 15:38:56,936 | INFO     | update_server=False
[2025-11-27 16:39:28] 2025-11-27 15:38:56,936 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:39:28] 2025-11-27 15:38:57,107 | INFO     | all data control threads have been joined
[2025-11-27 16:39:28] 2025-11-27 15:38:57,116 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 16:39:28] 2025-11-27 15:38:57,116 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 16:39:28] 2025-11-27 15:38:57,116 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:39:28] 2025-11-27 15:38:57,117 | INFO     | will abort loop
[2025-11-27 16:39:28] 2025-11-27 15:38:57,225 | INFO     | all payload control threads have been joined
[2025-11-27 16:39:28] 2025-11-27 15:38:57,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:39:28] 2025-11-27 15:38:57,941 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:58,112 | INFO     | [data] control thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:58,122 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:58,210 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:58,230 | INFO     | [payload] control thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:58,230 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:58,271 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:58,306 | INFO     | all job control threads have been joined
[2025-11-27 16:39:28] 2025-11-27 15:38:58,578 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:58,923 | INFO     | [job] validate thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:59,071 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:39:28] 2025-11-27 15:38:59,146 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:59,312 | INFO     | [job] control thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:59,354 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:59,464 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:38:59,678 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:39:28] 2025-11-27 15:38:59,919 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:39:00,683 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:39:03,077 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:39:28] 2025-11-27 15:39:11,667 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:39:28] 2025-11-27 15:39:11,779 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140524352022336)>', '<ExcThread(monitor, started 140524031809280)>']
[2025-11-27 16:39:28] 2025-11-27 15:39:16,795 | INFO     | all workflow threads have been joined
[2025-11-27 16:39:28] 2025-11-27 15:39:16,796 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:39:28] 2025-11-27 15:39:16,796 | INFO     | traces error code: 0
[2025-11-27 16:39:28] 2025-11-27 15:39:16,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:39:28] 2025-11-27 15:39:27,962 | INFO     | PID=2968761 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:39:28] 2025-11-27 15:39:27,963 | INFO     | .. there are 2 such processes running
[2025-11-27 16:39:28] 2025-11-27 15:39:27,964 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:39:28] 2025-11-27 15:39:27,964 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:39:28] 2025-11-27 15:39:27,964 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:39:28] 2025-11-27 15:39:27,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:39:28] 2025-11-27 15:39:27,964 | INFO     | [monitor] control thread has ended
[2025-11-27 16:39:28] 2025-11-27 15:39:28,094 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:39:28] 2025-11-27 15:39:28,097 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:39:28] 2025-11-27 15:39:28,100 [wrapper] pilotpid: 2968761
[2025-11-27 16:39:28] 2025-11-27 15:39:28,102 [wrapper] Pilot exit status: 0
[2025-11-27 16:39:28] 2025-11-27 15:39:28,112 [wrapper] pandaids: 6893855641
[2025-11-27 16:39:28] 2025-11-27 15:39:28,150 [wrapper] cleanup supervisor_pilot 3229076 2968762
[2025-11-27 16:39:28] 2025-11-27 15:39:28,152 [wrapper] Test setup, not cleaning
[2025-11-27 16:39:28] 2025-11-27 15:39:28,155 [wrapper] apfmon messages muted
[2025-11-27 16:39:28] 2025-11-27 15:39:28,158 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:39:28] 2025-11-27 15:39:28,160 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:39:28]  *** Error codes and diagnostics ***
[2025-11-27 16:39:28]     "exeErrorCode": 0,
[2025-11-27 16:39:28]     "exeErrorDiag": "",
[2025-11-27 16:39:28]     "pilotErrorCode": 0,
[2025-11-27 16:39:28]     "pilotErrorDiag": "",
[2025-11-27 16:39:28]  *** Listing of results directory ***
[2025-11-27 16:39:28] total 1316704
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc      5112 Nov 20 13:39 queuedata.json
[2025-11-27 16:39:28] -rwx------. 1 boinc boinc     36292 Nov 20 13:39 runpilot2-wrapper.sh
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc       100 Nov 27 04:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:39:28] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 04:46 run_atlas
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc       105 Nov 27 04:46 job.xml
[2025-11-27 16:39:28] -rw-r--r--. 2 boinc boinc 411577118 Nov 27 04:46 EVNT.47493127._000449.pool.root.1
[2025-11-27 16:39:28] drwxrwx--x. 2 boinc boinc        68 Nov 27 04:46 shared
[2025-11-27 16:39:28] -rw-r--r--. 2 boinc boinc    590097 Nov 27 04:46 input.tar.gz
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc      6293 Nov 27 04:46 init_data.xml
[2025-11-27 16:39:28] -rw-r--r--. 2 boinc boinc     15847 Nov 27 04:46 start_atlas.sh
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc         0 Nov 27 04:46 boinc_lockfile
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc      2785 Nov 27 04:46 pandaJob.out
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc    991546 Nov 27 04:46 agis_schedconf.cvmfs.json
[2025-11-27 16:39:28] drwx------. 5 boinc boinc      4096 Nov 27 04:47 pilot3
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc       533 Nov 27 16:30 boinc_task_state.xml
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc 916234339 Nov 27 16:38 HITS.47523449._004482.pool.root.1
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc      1036 Nov 27 16:38 memory_monitor_summary.json
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc   1516240 Nov 27 16:38 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc   2397804 Nov 27 16:38 log.47523449._004482.job.log.tgz.1
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc      8612 Nov 27 16:38 heartbeat.json
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc      8192 Nov 27 16:39 boinc_mmap_file
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc        29 Nov 27 16:39 wrapper_checkpoint.txt
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc        95 Nov 27 16:39 pilot_heartbeat.json
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc       822 Nov 27 16:39 pilotlog.txt
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc   5895155 Nov 27 16:39 log.47523449._004482.job.log.1
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc       353 Nov 27 16:39 output.list
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc       620 Nov 27 16:39 runtime_log
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc   8314880 Nov 27 16:39 result.tar.gz
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc      8842 Nov 27 16:39 runtime_log.err
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc       665 Nov 27 16:39 RoWKDmZ7Ig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXdGKDmCJyoSn.diag
[2025-11-27 16:39:28] -rw-r--r--. 1 boinc boinc     21506 Nov 27 16:39 stderr.txt
[2025-11-27 16:39:28] HITS file was successfully produced:
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc 916234339 Nov 27 16:38 shared/HITS.pool.root.1
[2025-11-27 16:39:28]  *** Contents of shared directory: ***
[2025-11-27 16:39:28] total 1305412
[2025-11-27 16:39:28] -rw-r--r--. 2 boinc boinc 411577118 Nov 27 04:46 ATLAS.root_0
[2025-11-27 16:39:28] -rw-r--r--. 2 boinc boinc    590097 Nov 27 04:46 input.tar.gz
[2025-11-27 16:39:28] -rw-r--r--. 2 boinc boinc     15847 Nov 27 04:46 start_atlas.sh
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc 916234339 Nov 27 16:38 HITS.pool.root.1
[2025-11-27 16:39:28] -rw-------. 1 boinc boinc   8314880 Nov 27 16:39 result.tar.gz
16:39:29 (2964923): run_atlas exited; CPU time 496538.259587
16:39:29 (2964923): called boinc_finish(0)

</stderr_txt>
]]>

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