Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:04:30 (2624718): wrapper (7.7.26015): starting
19:04:30 (2624718): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:04:30] Arguments: --nthreads 8
[2025-11-26 19:04:30] Threads: 8
[2025-11-26 19:04:30] Checking for CVMFS
[2025-11-26 19:04:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:04:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:04:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:04:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:04:32] 2.13.3.0 11226 29049 357832 153340 1 763 23723429 32935937 19057 16776704 0 68440945 99.473 94735084 40058 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 19:04:32] CVMFS is ok
[2025-11-26 19:04:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:04:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:04:32] Further information can be found at the LHC@home message board.
[2025-11-26 19:04:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:04:32] Checking for apptainer binary...
[2025-11-26 19:04:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:04:32] Running /usr/bin/apptainer --version
[2025-11-26 19:04:32] apptainer version 1.4.4-1.el9
[2025-11-26 19:04:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:04:33] c6-2-29-3.aglt2.org
[2025-11-26 19:04:33] apptainer works
[2025-11-26 19:04:33] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:04:33] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:04:33] Starting ATLAS job with PandaID=6898376972
[2025-11-26 19:04:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 21:49:13]  *** The last 200 lines of the pilot log: ***
[2025-11-27 21:49:13] 2025-11-28 02:48:05,246 | INFO     | time since job start (96171s) is within the limit (172800.0s)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,112 | INFO     | monitor loop #5731: job 0:6898376972 is in state 'finished'
[2025-11-27 21:49:13] 2025-11-28 02:48:06,112 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,329 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 21:49:13] 2025-11-28 02:48:06,340 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2886.3553035714285
[2025-11-27 21:49:13] 2025-11-28 02:48:06,352 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898376972/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,353 | INFO     | extracted standard info from prmon json
[2025-11-27 21:49:13] 2025-11-28 02:48:06,353 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 21:49:13] 2025-11-28 02:48:06,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 21:49:13] 2025-11-28 02:48:06,384 | INFO     | fitting pss+swap vs Time
[2025-11-27 21:49:13] 2025-11-28 02:48:06,387 | INFO     | sum of square deviations: 1213803159937.744
[2025-11-27 21:49:13] 2025-11-28 02:48:06,447 | INFO     | sum of deviations: 5457192946071.943
[2025-11-27 21:49:13] 2025-11-28 02:48:06,447 | INFO     | mean x: 1764250027.3286803
[2025-11-27 21:49:13] 2025-11-28 02:48:06,448 | INFO     | mean y: 2961490.8090101522
[2025-11-27 21:49:13] 2025-11-28 02:48:06,448 | INFO     | intersect: -7929010613.085595
[2025-11-27 21:49:13] 2025-11-28 02:48:06,450 | INFO     | chi2: 10.1194455254115
[2025-11-27 21:49:13] 2025-11-28 02:48:06,453 | INFO     | sum of square deviations: 1202287990450.9722
[2025-11-27 21:49:13] 2025-11-28 02:48:06,517 | INFO     | sum of deviations: 6001083766132.259
[2025-11-27 21:49:13] 2025-11-28 02:48:06,517 | INFO     | mean x: 1764249874.8345003
[2025-11-27 21:49:13] 2025-11-28 02:48:06,517 | INFO     | mean y: 2968693.035646085
[2025-11-27 21:49:13] 2025-11-28 02:48:06,517 | INFO     | intersect: -8803083906.141449
[2025-11-27 21:49:13] 2025-11-28 02:48:06,519 | INFO     | chi2: 6.954181320025806
[2025-11-27 21:49:13] 2025-11-28 02:48:06,519 | INFO     | current chi2=6.954181320025806 (change=31.279028059761018 %)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,521 | INFO     | sum of square deviations: 1190845700810.9495
[2025-11-27 21:49:13] 2025-11-28 02:48:06,566 | INFO     | sum of deviations: 6354518290945.459
[2025-11-27 21:49:13] 2025-11-28 02:48:06,566 | INFO     | mean x: 1764249722.3390806
[2025-11-27 21:49:13] 2025-11-28 02:48:06,566 | INFO     | mean y: 2973401.2816091953
[2025-11-27 21:49:13] 2025-11-28 02:48:06,566 | INFO     | intersect: -9411308501.709373
[2025-11-27 21:49:13] 2025-11-28 02:48:06,568 | INFO     | chi2: 5.391024002859466
[2025-11-27 21:49:13] 2025-11-28 02:48:06,568 | INFO     | current chi2=5.391024002859466 (change=22.47794880850963 %)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,569 | INFO     | right removable region: 1565
[2025-11-27 21:49:13] 2025-11-28 02:48:06,571 | INFO     | sum of square deviations: 1202286232430.9695
[2025-11-27 21:49:13] 2025-11-28 02:48:06,613 | INFO     | sum of deviations: 4875282918263.462
[2025-11-27 21:49:13] 2025-11-28 02:48:06,613 | INFO     | mean x: 1764250179.8345003
[2025-11-27 21:49:13] 2025-11-28 02:48:06,613 | INFO     | mean y: 2969194.294080204
[2025-11-27 21:49:13] 2025-11-28 02:48:06,613 | INFO     | intersect: -7151083254.51347
[2025-11-27 21:49:13] 2025-11-28 02:48:06,615 | INFO     | chi2: 6.812191058731086
[2025-11-27 21:49:13] 2025-11-28 02:48:06,615 | INFO     | current chi2=6.812191058731086 (change=32.682170760990644 %)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,617 | INFO     | sum of square deviations: 1190842854861.9768
[2025-11-27 21:49:13] 2025-11-28 02:48:06,656 | INFO     | sum of deviations: 4682758575811.469
[2025-11-27 21:49:13] 2025-11-28 02:48:06,657 | INFO     | mean x: 1764250332.3371646
[2025-11-27 21:49:13] 2025-11-28 02:48:06,657 | INFO     | mean y: 2971758.809706258
[2025-11-27 21:49:13] 2025-11-28 02:48:06,657 | INFO     | intersect: -6934600516.070876
[2025-11-27 21:49:13] 2025-11-28 02:48:06,658 | INFO     | chi2: 6.528837478316233
[2025-11-27 21:49:13] 2025-11-28 02:48:06,659 | INFO     | current chi2=6.528837478316233 (change=4.159507241824683 %)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,659 | INFO     | left removable region: 20
[2025-11-27 21:49:13] 2025-11-28 02:48:06,660 | INFO     | sum of square deviations: 1143576352217.057
[2025-11-27 21:49:13] 2025-11-28 02:48:06,707 | INFO     | sum of deviations: 5374655827232.288
[2025-11-27 21:49:13] 2025-11-28 02:48:06,708 | INFO     | mean x: 1764250301.85178
[2025-11-27 21:49:13] 2025-11-28 02:48:06,708 | INFO     | mean y: 2987902.2239482203
[2025-11-27 21:49:13] 2025-11-28 02:48:06,708 | INFO     | intersect: -8288752432.525658
[2025-11-27 21:49:13] 2025-11-28 02:48:06,710 | INFO     | chi2: 1.4987107298996536
[2025-11-27 21:49:13] 2025-11-28 02:48:06,710 | INFO     | current memory leak: 4.70 B/s (using 1545 data points, chi2=1.50)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,712 | INFO     | could have reported an average CPU frequency of 2845 MHz (56 samples)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,712 | INFO     | ..............................
[2025-11-27 21:49:13] 2025-11-28 02:48:06,712 | INFO     | . Timing measurements:
[2025-11-27 21:49:13] 2025-11-28 02:48:06,712 | INFO     | . get job = 0 s
[2025-11-27 21:49:13] 2025-11-28 02:48:06,713 | INFO     | . initial setup = 3 s
[2025-11-27 21:49:13] 2025-11-28 02:48:06,713 | INFO     | . payload setup = 21 s
[2025-11-27 21:49:13] 2025-11-28 02:48:06,713 | INFO     | . stage-in = 0 s
[2025-11-27 21:49:13] 2025-11-28 02:48:06,713 | INFO     | . payload execution = 96096 s
[2025-11-27 21:49:13] 2025-11-28 02:48:06,713 | INFO     | . stage-out = 3 s
[2025-11-27 21:49:13] 2025-11-28 02:48:06,713 | INFO     | . log creation = 0 s
[2025-11-27 21:49:13] 2025-11-28 02:48:06,713 | INFO     | ..............................
[2025-11-27 21:49:13] 2025-11-28 02:48:06,895 | INFO     | 
[2025-11-27 21:49:13] 2025-11-28 02:48:06,895 | INFO     | job summary report
[2025-11-27 21:49:13] 2025-11-28 02:48:06,895 | INFO     | --------------------------------------------------
[2025-11-27 21:49:13] 2025-11-28 02:48:06,895 | INFO     | PanDA job id: 6898376972
[2025-11-27 21:49:13] 2025-11-28 02:48:06,895 | INFO     | task id: 47556161
[2025-11-27 21:49:13] 2025-11-28 02:48:06,895 | INFO     | errors: (none)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 21:49:13] 2025-11-28 02:48:06,896 | INFO     | pilot state: finished 
[2025-11-27 21:49:13] 2025-11-28 02:48:06,896 | INFO     | transexitcode: 0
[2025-11-27 21:49:13] 2025-11-28 02:48:06,896 | INFO     | exeerrorcode: 0
[2025-11-27 21:49:13] 2025-11-28 02:48:06,896 | INFO     | exeerrordiag: 
[2025-11-27 21:49:13] 2025-11-28 02:48:06,896 | INFO     | exitcode: 0
[2025-11-27 21:49:13] 2025-11-28 02:48:06,896 | INFO     | exitmsg: OK
[2025-11-27 21:49:13] 2025-11-28 02:48:06,896 | INFO     | cpuconsumptiontime: 256966 s
[2025-11-27 21:49:13] 2025-11-28 02:48:06,896 | INFO     | nevents: 1000
[2025-11-27 21:49:13] 2025-11-28 02:48:06,896 | INFO     | neventsw: 0
[2025-11-27 21:49:13] 2025-11-28 02:48:06,897 | INFO     | pid: 2641735
[2025-11-27 21:49:13] 2025-11-28 02:48:06,897 | INFO     | pgrp: 2641735
[2025-11-27 21:49:13] 2025-11-28 02:48:06,897 | INFO     | corecount: 8
[2025-11-27 21:49:13] 2025-11-28 02:48:06,897 | INFO     | event service: False
[2025-11-27 21:49:13] 2025-11-28 02:48:06,897 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 14: 2284633, 23: 2284661, 96122: 2354295, 96127: 2363345, 96137: 2363535}
[2025-11-27 21:49:13] 2025-11-28 02:48:06,897 | INFO     | --------------------------------------------------
[2025-11-27 21:49:13] 2025-11-28 02:48:06,897 | INFO     | 
[2025-11-27 21:49:13] 2025-11-28 02:48:06,897 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 21:49:13] 2025-11-28 02:48:06,978 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,978 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,978 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,978 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,978 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,979 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,979 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,979 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,979 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,979 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,979 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,979 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,979 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,979 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,979 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,980 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,980 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,980 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 21:49:13] 2025-11-28 02:48:06,980 | INFO     | job 6898376972 has completed (purged errors)
[2025-11-27 21:49:13] 2025-11-28 02:48:06,981 | INFO     | overall cleanup function is called
[2025-11-27 21:49:13] 2025-11-28 02:48:08,010 | INFO     | --- collectZombieJob: --- 10, [2641735]
[2025-11-27 21:49:13] 2025-11-28 02:48:08,010 | INFO     | zombie collector waiting for pid 2641735
[2025-11-27 21:49:13] 2025-11-28 02:48:08,010 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 21:49:13] 2025-11-28 02:48:08,010 | INFO     | collected zombie processes
[2025-11-27 21:49:13] 2025-11-28 02:48:08,010 | INFO     | will attempt to kill all subprocesses of pid=2641735
[2025-11-27 21:49:13] 2025-11-28 02:48:08,507 | INFO     | process IDs to be killed: [2641735] (in reverse order)
[2025-11-27 21:49:13] 2025-11-28 02:48:08,629 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 21:49:13] 2025-11-28 02:48:08,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 21:49:13] 2025-11-28 02:48:08,646 | INFO     | did not find any defunct processes belonging to 2641735
[2025-11-27 21:49:13] 2025-11-28 02:48:08,663 | INFO     | did not find any defunct processes belonging to 2641735
[2025-11-27 21:49:13] 2025-11-28 02:48:08,670 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 21:49:13] 2025-11-28 02:48:08,671 | INFO     | ready for new job
[2025-11-27 21:49:13] 2025-11-28 02:48:08,671 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 21:49:13] 2025-11-28 02:48:08,687 | INFO     | ***************************************
[2025-11-27 21:49:13] 2025-11-28 02:48:08,688 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 21:49:13] 2025-11-28 02:48:08,688 | INFO     | ***************************************
[2025-11-27 21:49:13] 2025-11-28 02:48:08,688 | INFO     | 
[2025-11-27 21:49:13] 2025-11-28 02:48:08,691 | INFO     | architecture information:
[2025-11-27 21:49:13] 2025-11-28 02:48:08,692 | INFO     | executing command: cat /etc/os-release
[2025-11-27 21:49:13] 2025-11-28 02:48:08,709 | INFO     | cat /etc/os-release:
[2025-11-27 21:49:13] NAME="CentOS Linux"
[2025-11-27 21:49:13] VERSION="7 (Core)"
[2025-11-27 21:49:13] ID="centos"
[2025-11-27 21:49:13] ID_LIKE="rhel fedora"
[2025-11-27 21:49:13] VERSION_ID="7"
[2025-11-27 21:49:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 21:49:13] ANSI_COLOR="0;31"
[2025-11-27 21:49:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 21:49:13] HOME_URL="https://www.centos.org/"
[2025-11-27 21:49:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 21:49:13] 
[2025-11-27 21:49:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 21:49:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 21:49:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 21:49:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 21:49:13] 
[2025-11-27 21:49:13] 2025-11-28 02:48:08,709 | INFO     | ***************************************
[2025-11-27 21:49:13] 2025-11-28 02:48:09,214 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 21:49:13] 2025-11-28 02:48:09,239 | INFO     | sufficient remaining disk space (71157415936 B)
[2025-11-27 21:49:13] 2025-11-28 02:48:09,240 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 21:49:13] 2025-11-28 02:48:09,240 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 21:49:13] 2025-11-28 02:48:09,240 | INFO     | update_server=False
[2025-11-27 21:49:13] 2025-11-28 02:48:09,240 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 21:49:13] 2025-11-28 02:48:09,302 | INFO     | all data control threads have been joined
[2025-11-27 21:49:13] 2025-11-28 02:48:09,622 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:49:13] 2025-11-28 02:48:09,623 | INFO     | aborting loop
[2025-11-27 21:49:13] 2025-11-28 02:48:09,855 | INFO     | all job control threads have been joined
[2025-11-27 21:49:13] 2025-11-28 02:48:09,975 | INFO     | all payload control threads have been joined
[2025-11-27 21:49:13] 2025-11-28 02:48:10,233 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 21:49:13] 2025-11-28 02:48:10,246 | INFO     | [job] retrieve thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:10,308 | INFO     | [data] control thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:10,312 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:10,410 | INFO     | [job] validate thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:10,629 | INFO     | [job] job monitor thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:10,746 | INFO     | [data] copytool_in thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:10,861 | INFO     | [job] control thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:10,981 | INFO     | [payload] control thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:10,998 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:11,158 | INFO     | [payload] validate_post thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:11,226 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:11,456 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:11,709 | INFO     | [payload] failed_post thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:11,838 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 21:49:13] 2025-11-28 02:48:12,240 | INFO     | [data] copytool_out thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:12,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 21:49:13] 2025-11-28 02:48:12,844 | INFO     | [job] queue monitor thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:16,427 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 21:49:13] 2025-11-28 02:48:38,839 | INFO     | PID=2631944 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 21:49:13] 2025-11-28 02:48:38,839 | INFO     | .. there are 32 such processes running
[2025-11-27 21:49:13] 2025-11-28 02:48:38,839 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 21:49:13] 2025-11-28 02:48:38,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 21:49:13] 2025-11-28 02:48:38,840 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 21:49:13] 2025-11-28 02:49:06,001 | INFO     | [monitor] cgroup control has ended
[2025-11-27 21:49:13] 2025-11-28 02:49:07,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900183201600)>', '<ExcThread(monitor, started 139899667724032)>']
[2025-11-27 21:49:13] 2025-11-28 02:49:08,021 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 21:49:13] 2025-11-28 02:49:08,021 | INFO     | [monitor] control thread has ended
[2025-11-27 21:49:13] 2025-11-28 02:49:12,938 | INFO     | all workflow threads have been joined
[2025-11-27 21:49:13] 2025-11-28 02:49:12,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 21:49:13] 2025-11-28 02:49:12,939 | INFO     | traces error code: 0
[2025-11-27 21:49:13] 2025-11-28 02:49:12,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 21:49:13] 2025-11-28 02:49:13,123 [wrapper] ==== pilot stdout END ====
[2025-11-27 21:49:13] 2025-11-28 02:49:13,127 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 21:49:13] 2025-11-28 02:49:13,130 [wrapper] pilotpid: 2631944
[2025-11-27 21:49:13] 2025-11-28 02:49:13,133 [wrapper] Pilot exit status: 0
[2025-11-27 21:49:13] 2025-11-28 02:49:13,221 [wrapper] pandaids: 6898376972
[2025-11-27 21:49:13] 2025-11-28 02:49:13,376 [wrapper] cleanup supervisor_pilot 1440573 2631945
[2025-11-27 21:49:13] 2025-11-28 02:49:13,379 [wrapper] Test setup, not cleaning
[2025-11-27 21:49:13] 2025-11-28 02:49:13,381 [wrapper] apfmon messages muted
[2025-11-27 21:49:13] 2025-11-28 02:49:13,384 [wrapper] ==== wrapper stdout END ====
[2025-11-27 21:49:13] 2025-11-28 02:49:13,386 [wrapper] ==== wrapper stderr END ====
[2025-11-27 21:49:13]  *** Error codes and diagnostics ***
[2025-11-27 21:49:13]     "exeErrorCode": 0,
[2025-11-27 21:49:13]     "exeErrorDiag": "",
[2025-11-27 21:49:13]     "pilotErrorCode": 0,
[2025-11-27 21:49:13]     "pilotErrorDiag": "",
[2025-11-27 21:49:13]  *** Listing of results directory ***
[2025-11-27 21:49:13] total 1349304
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:57 pilot3.tar.gz
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:59 queuedata.json
[2025-11-27 21:49:13] -rwx------. 1 boincer umatlas     36292 Nov 26 11:00 runpilot2-wrapper.sh
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 21:49:13] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:04 run_atlas
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:04 job.xml
[2025-11-27 21:49:13] -rw-r--r--. 2 boincer umatlas 408912036 Nov 26 19:04 EVNT.47483658._002562.pool.root.1
[2025-11-27 21:49:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:04 start_atlas.sh
[2025-11-27 21:49:13] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:04 shared
[2025-11-27 21:49:13] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 19:04 input.tar.gz
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:04 boinc_lockfile
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 19:04 pandaJob.out
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas        57 Nov 26 19:04 setup.sh.local
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas    991538 Nov 26 19:05 agis_schedconf.cvmfs.json
[2025-11-27 21:49:13] drwx------. 5 boincer umatlas      4096 Nov 26 19:05 pilot3
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas       533 Nov 27 21:25 boinc_task_state.xml
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas      6844 Nov 27 21:45 init_data.xml
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas 939525722 Nov 27 21:47 HITS.47556161._005450.pool.root.1
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas      1058 Nov 27 21:47 memory_monitor_summary.json
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas        95 Nov 27 21:47 pilot_heartbeat.json
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas   1516240 Nov 27 21:47 agis_ddmendpoints.agis.ALL.json
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas   2559588 Nov 27 21:47 log.47556161._005450.job.log.tgz.1
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas      8617 Nov 27 21:48 heartbeat.json
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas        29 Nov 27 21:49 wrapper_checkpoint.txt
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 21:49 boinc_mmap_file
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas      4824 Nov 27 21:49 pilotlog.txt
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas  12101400 Nov 27 21:49 log.47556161._005450.job.log.1
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas       353 Nov 27 21:49 output.list
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas       620 Nov 27 21:49 runtime_log
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas  14684160 Nov 27 21:49 result.tar.gz
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 21:49 runtime_log.err
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas       661 Nov 27 21:49 nBeMDmx7Wi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmE7MKDmU6NV6m.diag
[2025-11-27 21:49:13] -rw-r--r--. 1 boincer umatlas     21333 Nov 27 21:49 stderr.txt
[2025-11-27 21:49:13] HITS file was successfully produced:
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas 939525722 Nov 27 21:47 shared/HITS.pool.root.1
[2025-11-27 21:49:13]  *** Contents of shared directory: ***
[2025-11-27 21:49:13] total 1331784
[2025-11-27 21:49:13] -rw-r--r--. 2 boincer umatlas 408912036 Nov 26 19:04 ATLAS.root_0
[2025-11-27 21:49:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:04 start_atlas.sh
[2025-11-27 21:49:13] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 19:04 input.tar.gz
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas 939525722 Nov 27 21:47 HITS.pool.root.1
[2025-11-27 21:49:13] -rw-------. 1 boincer umatlas  14684160 Nov 27 21:49 result.tar.gz
21:49:35 (2624718): run_atlas exited; CPU time 259238.737196
21:49:35 (2624718): called boinc_finish(0)

</stderr_txt>
]]>

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