Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 01:51:57 (23424): vboxwrapper version 26210
2025-11-27 01:51:57 (23424): BOINC client version: 8.0.2
2025-11-27 01:51:57 (23424): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-11-27 01:51:58 (23424): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 01:51:58 (23424): Create VM. (boinc_c6abfa4092b95787, slot#0)
2025-11-27 01:51:58 (23424): Setting Memory Size for VM. (4800MB)
2025-11-27 01:51:59 (23424): Setting CPU Count for VM. (8)
2025-11-27 01:51:59 (23424): Setting Chipset Options for VM.
2025-11-27 01:51:59 (23424): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 01:51:59 (23424): Setting Boot Options for VM.
2025-11-27 01:52:00 (23424): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 01:52:00 (23424): Enabling VM Network Access.
2025-11-27 01:52:00 (23424): Disabling USB Support for VM.
2025-11-27 01:52:01 (23424): Disabling COM Port Support for VM.
2025-11-27 01:52:01 (23424): Disabling LPT Port Support for VM.
2025-11-27 01:52:01 (23424): Disabling Audio Support for VM.
2025-11-27 01:52:01 (23424): Disabling Clipboard Support for VM.
2025-11-27 01:52:02 (23424): Disabling Drag and Drop Support for VM.
2025-11-27 01:52:02 (23424): Adding storage controller(s) to VM.
2025-11-27 01:52:02 (23424): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 01:52:04 (23424): Adding VirtualBox Guest Additions to VM.
2025-11-27 01:52:04 (23424): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 01:52:05 (23424): forwarding host port 56080 to guest port 80
2025-11-27 01:52:05 (23424): Enabling remote desktop for VM.
2025-11-27 01:52:05 (23424): Required extension pack not installed, remote desktop not enabled.
2025-11-27 01:52:05 (23424): Enabling shared directory for VM.
2025-11-27 01:52:06 (23424): Starting VM using VBoxManage interface. (boinc_c6abfa4092b95787, slot#0)
2025-11-27 01:52:10 (23424): Successfully started VM. (PID = '14708')
2025-11-27 01:52:10 (23424): Reporting VM Process ID to BOINC.
2025-11-27 01:52:10 (23424): Guest Log: BIOS: VirtualBox 7.2.2
2025-11-27 01:52:10 (23424): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 01:52:10 (23424): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 01:52:10 (23424): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 01:52:10 (23424): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 01:52:10 (23424): Detected: Web Application Enabled (http://localhost:56080)
2025-11-27 01:52:10 (23424): Preference change detected
2025-11-27 01:52:10 (23424): Setting CPU throttle for VM. (100%)
2025-11-27 01:52:10 (23424): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 23 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 01:52:12 (23424): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 01:52:12 (23424): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 01:52:14 (23424): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 01:52:14 (23424): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 01:52:14 (23424): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 01:52:19 (23424): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 01:52:19 (23424): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-27 01:52:24 (23424): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 01:52:24 (23424): Guest Log: 00:00:00.000124 main     Log opened 2025-11-27T01:52:22.075501000Z
2025-11-27 01:52:24 (23424): Guest Log: 00:00:00.000212 main     OS Product: Linux
2025-11-27 01:52:24 (23424): Guest Log: 00:00:00.000231 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 01:52:24 (23424): Guest Log: 00:00:00.000247 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 01:52:24 (23424): Guest Log: 00:00:00.000264 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 01:52:24 (23424): Guest Log: 00:00:00.000264 main     Process ID: 1369
2025-11-27 01:52:24 (23424): Guest Log: 00:00:00.000264 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 01:52:24 (23424): Guest Log: 00:00:00.000739 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 01:52:24 (23424): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 01:52:24 (23424): Guest Log: [INFO] Mounting shared directory
2025-11-27 01:52:24 (23424): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 01:52:34 (23424): Guest Log: 00:00:10.004605 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 018 667 000ns (GuestNow=1 764 201 154 058 627 000 ns GuestLast=1 764 208 342 077 294 000 ns fSetTimeLastLoop=true )
2025-11-27 01:53:07 (23424): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 01:53:07 (23424): Guest Log: [INFO] Detected branch: prod
2025-11-27 01:53:07 (23424): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 01:53:07 (23424): Guest Log: Copying input files
2025-11-27 01:53:09 (23424): Guest Log: Copied input files into RunAtlas.
2025-11-27 01:53:09 (23424): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 01:53:09 (23424): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 01:53:09 (23424): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 01:53:09 (23424): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 01:53:18 (23424): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 01:53:18 (23424): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 01:53:18 (23424): Guest Log: 2.6.3.0 1673 0 32148 153340 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 01:53:19 (23424): Guest Log: copied the webapp to /var/www
2025-11-27 01:53:19 (23424): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-27 01:53:19 (23424): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-27 01:53:19 (23424): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 01:53:19 (23424): Guest Log:  *** Starting ATLAS job. (PandaID=6898000239 taskID=47556173) ***
2025-11-27 03:32:09 (23424): Status Report: Elapsed Time: '6000.000000'
2025-11-27 03:32:09 (23424): Status Report: CPU Time: '44999.125000'
2025-11-27 05:12:08 (23424): Status Report: Elapsed Time: '12000.000000'
2025-11-27 05:12:08 (23424): Status Report: CPU Time: '92384.734375'
2025-11-27 05:31:56 (23424): VM state change detected. (old = 'running', new = 'paused')
2025-11-27 11:22:52 (23424): Guest Log: 03:39:32.532684 timesync vgsvcTimeSyncWorker: Radical host time change: 21 066 189 000 000ns (HostNow=1 764 235 372 765 000 000 ns HostLast=1 764 214 306 576 000 000 ns)
2025-11-27 11:22:52 (23424): VM state change detected. (old = 'paused', new = 'running')
2025-11-27 11:23:02 (23424): Guest Log: 03:39:42.540884 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 066 206 906 000ns (GuestNow=1 764 235 382 783 070 000 ns GuestLast=1 764 214 316 576 164 000 ns fSetTimeLastLoop=true )
2025-11-27 12:43:04 (23424): Status Report: Elapsed Time: '18000.000000'
2025-11-27 12:43:04 (23424): Status Report: CPU Time: '139855.375000'
2025-11-27 13:00:47 (23424): Preference change detected
2025-11-27 13:00:47 (23424): Setting CPU throttle for VM. (100%)
2025-11-27 13:00:47 (23424): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 23 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 13:02:57 (23424): Preference change detected
2025-11-27 13:02:57 (23424): Setting CPU throttle for VM. (100%)
2025-11-27 13:02:57 (23424): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 23 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 13:29:32 (23424): Guest Log:  *** Job finished ***
2025-11-27 13:29:32 (23424): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:12,746 | INFO     | all workflow threads have been joined
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:12,747 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:12,747 | INFO     | traces error code: 0
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:12,747 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,342 | INFO     | PID=6085 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,343 | INFO     | found 0 job(s) in 20 queues
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,343 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,343 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,343 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,343 | INFO     | [monitor] control thread has ended
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,458 [wrapper] ==== pilot stdout END ====
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,463 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,468 [wrapper] pilotpid: 6085
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,473 [wrapper] Pilot exit status: 0
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,493 [wrapper] pandaids: 6898000239
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,526 [wrapper] cleanup supervisor_pilot 26105 6086
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,532 [wrapper] Test setup, not cleaning
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,537 [wrapper] apfmon messages muted
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,542 [wrapper] ==== wrapper stdout END ====
2025-11-27 13:29:32 (23424): Guest Log: 2025-11-27 11:29:31,547 [wrapper] ==== wrapper stderr END ====
2025-11-27 13:29:32 (23424): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 13:29:32 (23424): Guest Log:     "exeErrorCode": 0,
2025-11-27 13:29:32 (23424): Guest Log:     "exeErrorDiag": "",
2025-11-27 13:29:32 (23424): Guest Log:     "pilotErrorCode": 0,
2025-11-27 13:29:32 (23424): Guest Log:     "pilotErrorDiag": "",
2025-11-27 13:29:32 (23424): Guest Log:  *** Listing of results directory ***
2025-11-27 13:29:32 (23424): Guest Log: total 908740
2025-11-27 13:29:32 (23424): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 26 02:38 pilot3.tar.gz
2025-11-27 13:29:32 (23424): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 26 02:41 queuedata.json
2025-11-27 13:29:32 (23424): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 26 02:45 runpilot2-wrapper.sh
2025-11-27 13:29:32 (23424): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 23:53 start_atlas.sh
2025-11-27 13:29:32 (23424): Guest Log: -rwxr-xr-x. 1 atlas atlas    590104 Nov 26 23:53 input.tar.gz
2025-11-27 13:29:32 (23424): Guest Log: -rwxr-xr-x. 1 atlas atlas      9171 Nov 26 23:53 init_data.xml
2025-11-27 13:29:32 (23424): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 23:53 EVNT.47483658._003155.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 13:29:32 (23424): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 26 23:53 pandaJob.out
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas    991538 Nov 26 23:53 agis_schedconf.cvmfs.json
2025-11-27 13:29:32 (23424): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 23:53 pilot3
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas 917863183 Nov 27 11:28 HITS.47556173._001115.pool.root.1
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 27 11:28 memory_monitor_summary.json
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 11:28 agis_ddmendpoints.agis.ALL.json
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas   1660671 Nov 27 11:28 log.47556173._001115.job.log.tgz.1
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas      8635 Nov 27 11:28 heartbeat.json
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas       744 Nov 27 11:29 pilotlog.txt
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas        98 Nov 27 11:29 pilot_heartbeat.json
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas   2760188 Nov 27 11:29 log.47556173._001115.job.log.1
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 11:29 output.list
2025-11-27 13:29:32 (23424): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 11:29 runtime_log
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas   4444160 Nov 27 11:29 result.tar.gz
2025-11-27 13:29:32 (23424): Guest Log: -rw-r--r--. 1 atlas atlas      8762 Nov 27 11:29 runtime_log.err
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas       665 Nov 27 11:29 0LpMDmthKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwkMKDmLSxb4n.diag
2025-11-27 13:29:32 (23424): Guest Log: Looking for outputfile HITS.47556173._001115.pool.root.1
2025-11-27 13:29:32 (23424): Guest Log: HITS file was successfully produced
2025-11-27 13:29:32 (23424): Guest Log: -rw-------. 1 atlas atlas 917863183 Nov 27 11:28 /home/atlas/RunAtlas/HITS.47556173._001115.pool.root.1
2025-11-27 13:29:36 (23424): Guest Log: Successfully finished the ATLAS job!
2025-11-27 13:29:36 (23424): Guest Log: Copying the results back to the shared directory!
2025-11-27 13:29:36 (23424): Guest Log:  *** Contents of shared directory: ***
2025-11-27 13:29:36 (23424): Guest Log: total 1301796
2025-11-27 13:29:36 (23424): Guest Log: -rwxrwxrwx. 1 root root 410105424 Nov 26 23:51 ATLAS.root_0
2025-11-27 13:29:36 (23424): Guest Log: -rwxrwxrwx. 1 root root 917863183 Nov 27  2025 HITS.pool.root.1
2025-11-27 13:29:36 (23424): Guest Log: -rwxrwxrwx. 1 root root      9171 Nov 26 23:51 init_data.xml
2025-11-27 13:29:36 (23424): Guest Log: -rwxrwxrwx. 1 root root    590104 Nov 26 23:51 input.tar.gz
2025-11-27 13:29:36 (23424): Guest Log: -rwxrwxrwx. 1 root root   4444160 Nov 27  2025 result.tar.gz
2025-11-27 13:29:36 (23424): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 23:51 start_atlas.sh
2025-11-27 13:29:36 (23424): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 13:29:36 (23424): VM Completion File Detected.
2025-11-27 13:29:36 (23424): Powering off VM.
2025-11-27 13:29:37 (23424): Successfully stopped VM.
2025-11-27 13:29:37 (23424): Deregistering VM. (boinc_c6abfa4092b95787, slot#0)
2025-11-27 13:29:37 (23424): Removing network bandwidth throttle group from VM.
2025-11-27 13:29:37 (23424): Removing VM from VirtualBox.
2025-11-27 13:29:43 (23424): called boinc_finish(0)

</stderr_txt>
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