Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:07:06 (1561122): wrapper (7.7.26015): starting
01:07:06 (1561122): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 01:07:06] Arguments: --nthreads 3
[2025-11-27 01:07:06] Threads: 3
[2025-11-27 01:07:06] Checking for CVMFS
[2025-11-27 01:07:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 01:07:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 01:07:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 01:07:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 01:07:06] 2.9.2.0 1414835 30 53608 153340 1 88 35785470 36864001 0 130560 0 438250 100.000 4 285 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 01:07:06] CVMFS is ok
[2025-11-27 01:07:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 01:07:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 01:07:06] Further information can be found at the LHC@home message board.
[2025-11-27 01:07:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 01:07:06] Checking for apptainer binary...
[2025-11-27 01:07:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 01:07:06] Running /usr/bin/apptainer --version
[2025-11-27 01:07:06] apptainer version 1.4.1-1.1
[2025-11-27 01:07:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 01:07:06] thA335
[2025-11-27 01:07:06] apptainer works
[2025-11-27 01:07:07] Set ATHENA_PROC_NUMBER=3
[2025-11-27 01:07:07] Set ATHENA_CORE_NUMBER=3
[2025-11-27 01:07:07] Starting ATLAS job with PandaID=6898000236
[2025-11-27 01:07:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:11:25]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:11:25] 2025-11-27 00:10:34,088 | INFO     | update_server=False
[2025-11-27 01:11:25] 2025-11-27 00:10:34,088 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:11:25] 2025-11-27 00:10:34,088 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:11:25] 2025-11-27 00:10:34,152 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 01:11:25] 2025-11-27 00:10:34,152 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 01:11:25] 2025-11-27 00:10:34,153 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:11:25] 2025-11-27 00:10:34,153 | INFO     | will abort loop
[2025-11-27 01:11:25] 2025-11-27 00:10:34,377 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:11:25] 2025-11-27 00:10:34,469 | INFO     | all data control threads have been joined
[2025-11-27 01:11:25] 2025-11-27 00:10:34,826 | INFO     | all payload control threads have been joined
[2025-11-27 01:11:25] 2025-11-27 00:10:35,090 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:35,094 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:35,159 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:35,328 | INFO     | all job control threads have been joined
[2025-11-27 01:11:25] 2025-11-27 00:10:35,400 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:35,476 | INFO     | [data] control thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:35,654 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:35,799 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:35,811 | INFO     | [job] validate thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:35,831 | INFO     | [payload] control thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:35,889 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:35,959 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:36,095 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:36,270 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:36,334 | INFO     | [job] control thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:36,384 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:10:36,456 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:11:25] 2025-11-27 00:10:40,463 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:11:25] 2025-11-27 00:11:03,902 | INFO     | PID=1564862 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 01:11:25] 2025-11-27 00:11:03,902 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:11:25] 2025-11-27 00:11:03,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:11:25] 2025-11-27 00:11:03,903 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:11:25] 2025-11-27 00:11:19,076 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:11:25] 2025-11-27 00:11:20,324 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140564097292096)>', '<ExcThread(monitor, started 140563449890560)>']
[2025-11-27 01:11:25] 2025-11-27 00:11:20,993 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:11:25] 2025-11-27 00:11:20,994 | INFO     | [monitor] control thread has ended
[2025-11-27 01:11:25] 2025-11-27 00:11:25,350 | INFO     | all workflow threads have been joined
[2025-11-27 01:11:25] 2025-11-27 00:11:25,351 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:11:25] 2025-11-27 00:11:25,351 | INFO     | traces error code: 0
[2025-11-27 01:11:25] 2025-11-27 00:11:25,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:11:25] 2025-11-27 00:11:25,396 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:11:25] 2025-11-27 00:11:25,399 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:11:25] 2025-11-27 00:11:25,402 [wrapper] pilotpid: 1564862
[2025-11-27 01:11:25] 2025-11-27 00:11:25,405 [wrapper] Pilot exit status: 0
[2025-11-27 01:11:25] 2025-11-27 00:11:25,412 [wrapper] pandaids: 6898000236
[2025-11-27 01:11:25] 2025-11-27 00:11:25,428 [wrapper] cleanup supervisor_pilot 1564868 1564863
[2025-11-27 01:11:25] 2025-11-27 00:11:25,430 [wrapper] Test setup, not cleaning
[2025-11-27 01:11:25] 2025-11-27 00:11:25,433 [wrapper] apfmon messages muted
[2025-11-27 01:11:25] 2025-11-27 00:11:25,435 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:11:25] 2025-11-27 00:11:25,438 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:11:25]  *** Error codes and diagnostics ***
[2025-11-27 01:11:25]     "exeErrorCode": 65,
[2025-11-27 01:11:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 01:11:25]     "pilotErrorCode": 1305,
[2025-11-27 01:11:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 01:11:25]  *** Listing of results directory ***
[2025-11-27 01:11:25] total 404592
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc    576529 Nov 26 03:38 pilot3.tar.gz
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc      5112 Nov 26 03:41 queuedata.json
[2025-11-27 01:11:25] -rwx------ 1 boinc boinc     36292 Nov 26 03:45 runpilot2-wrapper.sh
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc       100 Nov 27 01:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:11:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 01:07 run_atlas
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc       105 Nov 27 01:07 job.xml
[2025-11-27 01:11:25] -rw-r--r-- 2 boinc boinc 410105424 Nov 27 01:07 EVNT.47483658._003155.pool.root.1
[2025-11-27 01:11:25] drwxrwx--x 2 boinc boinc      4096 Nov 27 01:07 shared
[2025-11-27 01:11:25] -rw-r--r-- 2 boinc boinc    590101 Nov 27 01:07 input.tar.gz
[2025-11-27 01:11:25] -rw-r--r-- 2 boinc boinc     15847 Nov 27 01:07 start_atlas.sh
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc         0 Nov 27 01:07 boinc_setup_complete
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc      6196 Nov 27 01:07 init_data.xml
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc         0 Nov 27 01:07 boinc_lockfile
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc      2785 Nov 27 01:07 pandaJob.out
[2025-11-27 01:11:25] -rw------- 1 boinc boinc    991538 Nov 27 01:07 agis_schedconf.cvmfs.json
[2025-11-27 01:11:25] -rw------- 1 boinc boinc   1516240 Nov 27 01:07 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:11:25] drwx------ 5 boinc boinc      4096 Nov 27 01:07 pilot3
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc       522 Nov 27 01:08 boinc_task_state.xml
[2025-11-27 01:11:25] -rw------- 1 boinc boinc       939 Nov 27 01:08 memory_monitor_summary.json
[2025-11-27 01:11:25] -rw------- 1 boinc boinc     56099 Nov 27 01:08 log.47556173._001112.job.log.tgz.1
[2025-11-27 01:11:25] -rw------- 1 boinc boinc        95 Nov 27 01:10 pilot_heartbeat.json
[2025-11-27 01:11:25] -rw------- 1 boinc boinc      8401 Nov 27 01:10 heartbeat.json
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc      8192 Nov 27 01:11 boinc_mmap_file
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc        22 Nov 27 01:11 wrapper_checkpoint.txt
[2025-11-27 01:11:25] -rw------- 1 boinc boinc      4938 Nov 27 01:11 pilotlog.txt
[2025-11-27 01:11:25] -rw------- 1 boinc boinc     93665 Nov 27 01:11 log.47556173._001112.job.log.1
[2025-11-27 01:11:25] -rw------- 1 boinc boinc       186 Nov 27 01:11 output.list
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc       620 Nov 27 01:11 runtime_log
[2025-11-27 01:11:25] -rw------- 1 boinc boinc    174080 Nov 27 01:11 result.tar.gz
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc      8744 Nov 27 01:11 runtime_log.err
[2025-11-27 01:11:25] -rw------- 1 boinc boinc       649 Nov 27 01:11 38lMDmthKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtkMKDm5sOSam.diag
[2025-11-27 01:11:25] -rw-r--r-- 1 boinc boinc      8013 Nov 27 01:11 stderr.txt
[2025-11-27 01:11:25] No HITS result produced
[2025-11-27 01:11:25]  *** Contents of shared directory: ***
[2025-11-27 01:11:25] total 401268
[2025-11-27 01:11:25] -rw-r--r-- 2 boinc boinc 410105424 Nov 27 01:07 ATLAS.root_0
[2025-11-27 01:11:25] -rw-r--r-- 2 boinc boinc    590101 Nov 27 01:07 input.tar.gz
[2025-11-27 01:11:25] -rw-r--r-- 2 boinc boinc     15847 Nov 27 01:07 start_atlas.sh
[2025-11-27 01:11:25] -rw------- 1 boinc boinc    174080 Nov 27 01:11 result.tar.gz
01:11:26 (1561122): run_atlas exited; CPU time 31.927819
01:11:26 (1561122): called boinc_finish(0)

</stderr_txt>
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