Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:17 (2503955): wrapper (7.7.26015): starting
00:04:17 (2503955): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:04:17] Arguments: --nthreads 12
[2025-11-27 00:04:17] Threads: 12
[2025-11-27 00:04:17] Checking for CVMFS
[2025-11-27 00:04:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:04:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:04:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:04:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:04:18] 2.13.2.0 6884 35340 225796 153347 0 504 25237686 40960001 35390 16776704 0 209145288 99.674 177768419 36477 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:04:18] CVMFS is ok
[2025-11-27 00:04:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:04:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:04:18] Further information can be found at the LHC@home message board.
[2025-11-27 00:04:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:04:18] Checking for apptainer binary...
[2025-11-27 00:04:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:04:18] Running /usr/bin/apptainer --version
[2025-11-27 00:04:18] apptainer version 1.4.4-1.el9
[2025-11-27 00:04:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:04:18] c-212-8.aglt2.org
[2025-11-27 00:04:18] apptainer works
[2025-11-27 00:04:18] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:04:18] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:04:18] Starting ATLAS job with PandaID=6897881428
[2025-11-27 00:04:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:40:23]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:40:23] 2025-11-28 07:39:12,515 | INFO     | .. there are 41 such processes running
[2025-11-28 02:40:23] 2025-11-28 07:39:13,276 | INFO     | monitor loop #4933: job 0:6897881428 is in state 'finished'
[2025-11-28 02:40:23] 2025-11-28 07:39:13,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:40:23] 2025-11-28 07:39:13,530 | INFO     | time since job start (95656s) is within the limit (172800.0s)
[2025-11-28 02:40:23] 2025-11-28 07:39:15,537 | INFO     | time since job start (95658s) is within the limit (172800.0s)
[2025-11-28 02:40:23] 2025-11-28 07:39:15,796 | INFO     | monitor loop #4934: job 0:6897881428 is in state 'finished'
[2025-11-28 02:40:23] 2025-11-28 07:39:15,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:40:23] 2025-11-28 07:39:17,563 | INFO     | time since job start (95660s) is within the limit (172800.0s)
[2025-11-28 02:40:23] 2025-11-28 07:39:18,301 | INFO     | monitor loop #4935: job 0:6897881428 is in state 'finished'
[2025-11-28 02:40:23] 2025-11-28 07:39:18,304 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:40:23] 2025-11-28 07:39:19,575 | INFO     | time since job start (95662s) is within the limit (172800.0s)
[2025-11-28 02:40:23] 2025-11-28 07:39:20,808 | INFO     | monitor loop #4936: job 0:6897881428 is in state 'finished'
[2025-11-28 02:40:23] 2025-11-28 07:39:20,809 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:40:23] 2025-11-28 07:39:21,588 | INFO     | time since job start (95664s) is within the limit (172800.0s)
[2025-11-28 02:40:23] 2025-11-28 07:39:23,153 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 02:40:23] 2025-11-28 07:39:23,180 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3010.61734375
[2025-11-28 02:40:23] 2025-11-28 07:39:23,208 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897881428/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:40:23] 2025-11-28 07:39:23,210 | INFO     | extracted standard info from prmon json
[2025-11-28 02:40:23] 2025-11-28 07:39:23,210 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:40:23] 2025-11-28 07:39:23,210 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:40:23] 2025-11-28 07:39:23,326 | INFO     | monitor loop #4937: job 0:6897881428 is in state 'finished'
[2025-11-28 02:40:23] 2025-11-28 07:39:23,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:40:23] 2025-11-28 07:39:23,329 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:40:23] 2025-11-28 07:39:23,369 | INFO     | sum of square deviations: 1193264855979.561
[2025-11-28 02:40:23] 2025-11-28 07:39:23,491 | INFO     | sum of deviations: 1215434818383.5698
[2025-11-28 02:40:23] 2025-11-28 07:39:23,491 | INFO     | mean x: 1764267738.2654755
[2025-11-28 02:40:23] 2025-11-28 07:39:23,492 | INFO     | mean y: 3433556.275047862
[2025-11-28 02:40:23] 2025-11-28 07:39:23,492 | INFO     | intersect: -1793612947.9382796
[2025-11-28 02:40:23] 2025-11-28 07:39:23,493 | INFO     | chi2: 59.67717264882753
[2025-11-28 02:40:23] 2025-11-28 07:39:23,495 | INFO     | sum of square deviations: 1181882206630.7979
[2025-11-28 02:40:23] 2025-11-28 07:39:23,589 | INFO     | sum of deviations: 1889459009541.0688
[2025-11-28 02:40:23] 2025-11-28 07:39:23,589 | INFO     | mean x: 1764267585.7791293
[2025-11-28 02:40:23] 2025-11-28 07:39:23,589 | INFO     | mean y: 3442584.7567221513
[2025-11-28 02:40:23] 2025-11-28 07:39:23,589 | INFO     | intersect: -2817068009.691194
[2025-11-28 02:40:23] 2025-11-28 07:39:23,591 | INFO     | chi2: 55.49339152847296
[2025-11-28 02:40:23] 2025-11-28 07:39:23,591 | INFO     | current chi2=55.49339152847296 (change=7.010689237866844 %)
[2025-11-28 02:40:23] 2025-11-28 07:39:23,591 | INFO     | right removable region: 1561
[2025-11-28 02:40:23] 2025-11-28 07:39:23,592 | INFO     | sum of square deviations: 1181878129390.802
[2025-11-28 02:40:23] 2025-11-28 07:39:23,605 | INFO     | time since job start (95666s) is within the limit (172800.0s)
[2025-11-28 02:40:23] 2025-11-28 07:39:23,656 | INFO     | sum of deviations: 475189036556.81726
[2025-11-28 02:40:23] 2025-11-28 07:39:23,656 | INFO     | mean x: 1764267890.7791293
[2025-11-28 02:40:23] 2025-11-28 07:39:23,656 | INFO     | mean y: 3443469.982074264
[2025-11-28 02:40:23] 2025-11-28 07:39:23,657 | INFO     | intersect: -705902729.4264847
[2025-11-28 02:40:23] 2025-11-28 07:39:23,658 | INFO     | chi2: 55.809191868726884
[2025-11-28 02:40:23] 2025-11-28 07:39:23,658 | INFO     | current chi2=55.809191868726884 (change=6.481508101702333 %)
[2025-11-28 02:40:23] 2025-11-28 07:39:23,658 | INFO     | left removable region: 10
[2025-11-28 02:40:23] 2025-11-28 07:39:23,660 | INFO     | sum of square deviations: 1157087633021.4517
[2025-11-28 02:40:23] 2025-11-28 07:39:23,714 | INFO     | sum of deviations: 568366424749.5405
[2025-11-28 02:40:23] 2025-11-28 07:39:23,715 | INFO     | mean x: 1764267860.3094778
[2025-11-28 02:40:23] 2025-11-28 07:39:23,715 | INFO     | mean y: 3463770.140554481
[2025-11-28 02:40:23] 2025-11-28 07:39:23,715 | INFO     | intersect: -863152195.191459
[2025-11-28 02:40:23] 2025-11-28 07:39:23,716 | INFO     | chi2: 47.46106868769815
[2025-11-28 02:40:23] 2025-11-28 07:39:23,716 | INFO     | current memory leak: 0.49 B/s (using 1551 data points, chi2=47.46)
[2025-11-28 02:40:23] 2025-11-28 07:39:23,718 | INFO     | could have reported an average CPU frequency of 3026 MHz (56 samples)
[2025-11-28 02:40:23] 2025-11-28 07:39:23,718 | INFO     | ..............................
[2025-11-28 02:40:23] 2025-11-28 07:39:23,718 | INFO     | . Timing measurements:
[2025-11-28 02:40:23] 2025-11-28 07:39:23,718 | INFO     | . get job = 0 s
[2025-11-28 02:40:23] 2025-11-28 07:39:23,718 | INFO     | . initial setup = 6 s
[2025-11-28 02:40:23] 2025-11-28 07:39:23,719 | INFO     | . payload setup = 21 s
[2025-11-28 02:40:23] 2025-11-28 07:39:23,719 | INFO     | . stage-in = 0 s
[2025-11-28 02:40:23] 2025-11-28 07:39:23,719 | INFO     | . payload execution = 95569 s
[2025-11-28 02:40:23] 2025-11-28 07:39:23,719 | INFO     | . stage-out = 10 s
[2025-11-28 02:40:23] 2025-11-28 07:39:23,719 | INFO     | . log creation = 2 s
[2025-11-28 02:40:23] 2025-11-28 07:39:23,719 | INFO     | ..............................
[2025-11-28 02:40:23] 2025-11-28 07:39:23,800 | INFO     | 
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | job summary report
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | --------------------------------------------------
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | PanDA job id: 6897881428
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | task id: 47556161
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | errors: (none)
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | pilot state: finished 
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | transexitcode: 0
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | exeerrorcode: 0
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | exeerrordiag: 
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | exitcode: 0
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | exitmsg: OK
[2025-11-28 02:40:23] 2025-11-28 07:39:23,801 | INFO     | cpuconsumptiontime: 223574 s
[2025-11-28 02:40:23] 2025-11-28 07:39:23,802 | INFO     | nevents: 1000
[2025-11-28 02:40:23] 2025-11-28 07:39:23,802 | INFO     | neventsw: 0
[2025-11-28 02:40:23] 2025-11-28 07:39:23,802 | INFO     | pid: 2533907
[2025-11-28 02:40:23] 2025-11-28 07:39:23,802 | INFO     | pgrp: 2533907
[2025-11-28 02:40:23] 2025-11-28 07:39:23,802 | INFO     | corecount: 12
[2025-11-28 02:40:23] 2025-11-28 07:39:23,802 | INFO     | event service: False
[2025-11-28 02:40:23] 2025-11-28 07:39:23,802 | INFO     | sizes: {0: 2284037, 1: 2284292, 12: 2284292, 14: 2284582, 23: 2284610, 95594: 2352736, 95595: 2352863, 95606: 2361913, 95607: 2361969, 95631: 2362215}
[2025-11-28 02:40:23] 2025-11-28 07:39:23,802 | INFO     | --------------------------------------------------
[2025-11-28 02:40:23] 2025-11-28 07:39:23,802 | INFO     | 
[2025-11-28 02:40:23] 2025-11-28 07:39:23,802 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 02:40:23] 2025-11-28 07:39:23,826 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,827 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,827 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,827 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,827 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,827 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,827 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,827 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,827 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,827 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,828 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,828 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,828 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,828 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,828 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,828 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,828 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,828 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:40:23] 2025-11-28 07:39:23,828 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,828 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:40:23] 2025-11-28 07:39:23,829 | INFO     | job 6897881428 has completed (purged errors)
[2025-11-28 02:40:23] 2025-11-28 07:39:23,829 | INFO     | overall cleanup function is called
[2025-11-28 02:40:23] 2025-11-28 07:39:24,863 | INFO     | --- collectZombieJob: --- 10, [2533907]
[2025-11-28 02:40:23] 2025-11-28 07:39:24,864 | INFO     | zombie collector waiting for pid 2533907
[2025-11-28 02:40:23] 2025-11-28 07:39:24,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:40:23] 2025-11-28 07:39:24,864 | INFO     | collected zombie processes
[2025-11-28 02:40:23] 2025-11-28 07:39:24,864 | INFO     | will attempt to kill all subprocesses of pid=2533907
[2025-11-28 02:40:23] 2025-11-28 07:39:25,617 | INFO     | process IDs to be killed: [2533907] (in reverse order)
[2025-11-28 02:40:23] 2025-11-28 07:39:26,805 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:40:23] 2025-11-28 07:39:26,806 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:40:23] 2025-11-28 07:39:26,882 | INFO     | did not find any defunct processes belonging to 2533907
[2025-11-28 02:40:23] 2025-11-28 07:39:26,927 | INFO     | did not find any defunct processes belonging to 2533907
[2025-11-28 02:40:23] 2025-11-28 07:39:26,932 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:40:23] 2025-11-28 07:39:26,932 | INFO     | ready for new job
[2025-11-28 02:40:23] 2025-11-28 07:39:26,932 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:40:23] 2025-11-28 07:39:26,943 | INFO     | ***************************************
[2025-11-28 02:40:23] 2025-11-28 07:39:26,943 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:40:23] 2025-11-28 07:39:26,947 | INFO     | ***************************************
[2025-11-28 02:40:23] 2025-11-28 07:39:26,947 | INFO     | 
[2025-11-28 02:40:23] 2025-11-28 07:39:26,957 | INFO     | architecture information:
[2025-11-28 02:40:23] 2025-11-28 07:39:26,961 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:40:23] 2025-11-28 07:39:27,079 | INFO     | cat /etc/os-release:
[2025-11-28 02:40:23] NAME="CentOS Linux"
[2025-11-28 02:40:23] VERSION="7 (Core)"
[2025-11-28 02:40:23] ID="centos"
[2025-11-28 02:40:23] ID_LIKE="rhel fedora"
[2025-11-28 02:40:23] VERSION_ID="7"
[2025-11-28 02:40:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:40:23] ANSI_COLOR="0;31"
[2025-11-28 02:40:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:40:23] HOME_URL="https://www.centos.org/"
[2025-11-28 02:40:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:40:23] 
[2025-11-28 02:40:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:40:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:40:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:40:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:40:23] 
[2025-11-28 02:40:23] 2025-11-28 07:39:27,079 | INFO     | ***************************************
[2025-11-28 02:40:23] 2025-11-28 07:39:27,582 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 02:40:23] 2025-11-28 07:39:27,723 | INFO     | sufficient remaining disk space (121824608256 B)
[2025-11-28 02:40:23] 2025-11-28 07:39:27,723 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:40:23] 2025-11-28 07:39:27,723 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:40:23] 2025-11-28 07:39:27,723 | INFO     | update_server=False
[2025-11-28 02:40:23] 2025-11-28 07:39:27,724 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:40:23] 2025-11-28 07:39:27,724 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:40:23] 2025-11-28 07:39:27,725 | INFO     | aborting loop
[2025-11-28 02:40:23] 2025-11-28 07:39:27,725 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:40:23] 2025-11-28 07:39:28,002 | INFO     | all job control threads have been joined
[2025-11-28 02:40:23] 2025-11-28 07:39:28,472 | INFO     | all data control threads have been joined
[2025-11-28 02:40:23] 2025-11-28 07:39:28,473 | INFO     | all payload control threads have been joined
[2025-11-28 02:40:23] 2025-11-28 07:39:28,729 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:28,740 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:28,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:40:23] 2025-11-28 07:39:28,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:40:23] 2025-11-28 07:39:28,945 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,007 | INFO     | [job] control thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,355 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,478 | INFO     | [data] control thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,479 | INFO     | [payload] control thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,731 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,789 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,790 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,796 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,796 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,797 | INFO     | [job] validate thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,821 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:29,911 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:32,940 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:40:23] 2025-11-28 07:39:55,312 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:40:23] 2025-11-28 07:39:55,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139732454258496)>', '<ExcThread(monitor, started 139731543234304)>']
[2025-11-28 02:40:23] 2025-11-28 07:39:59,141 | INFO     | PID=2510825 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 02:40:23] 2025-11-28 07:39:59,142 | INFO     | .. there are 41 such processes running
[2025-11-28 02:40:23] 2025-11-28 07:39:59,142 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:40:23] 2025-11-28 07:39:59,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:40:23] 2025-11-28 07:39:59,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:40:23] 2025-11-28 07:39:59,142 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:40:23] 2025-11-28 07:39:59,142 | INFO     | [monitor] control thread has ended
[2025-11-28 02:40:23] 2025-11-28 07:40:00,850 | INFO     | all workflow threads have been joined
[2025-11-28 02:40:23] 2025-11-28 07:40:00,850 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:40:23] 2025-11-28 07:40:00,851 | INFO     | traces error code: 0
[2025-11-28 02:40:23] 2025-11-28 07:40:00,851 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:40:23] 2025-11-28 07:40:01,158 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:40:23] 2025-11-28 07:40:01,203 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:40:23] 2025-11-28 07:40:01,271 [wrapper] pilotpid: 2510825
[2025-11-28 02:40:23] 2025-11-28 07:40:01,301 [wrapper] Pilot exit status: 0
[2025-11-28 02:40:23] 2025-11-28 07:40:01,424 [wrapper] pandaids: 6897881428
[2025-11-28 02:40:23] 2025-11-28 07:40:02,098 [wrapper] cleanup supervisor_pilot  633662 2510826
[2025-11-28 02:40:23] 2025-11-28 07:40:02,138 [wrapper] Test setup, not cleaning
[2025-11-28 02:40:23] 2025-11-28 07:40:02,174 [wrapper] apfmon messages muted
[2025-11-28 02:40:23] 2025-11-28 07:40:02,177 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:40:23] 2025-11-28 07:40:02,199 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:40:23]  *** Error codes and diagnostics ***
[2025-11-28 02:40:23]     "exeErrorCode": 0,
[2025-11-28 02:40:23]     "exeErrorDiag": "",
[2025-11-28 02:40:23]     "pilotErrorCode": 0,
[2025-11-28 02:40:23]     "pilotErrorDiag": "",
[2025-11-28 02:40:23]  *** Listing of results directory ***
[2025-11-28 02:40:23] total 1331768
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:07 queuedata.json
[2025-11-28 02:40:23] -rwx------. 1 boincer umatlas     36292 Nov 25 21:10 runpilot2-wrapper.sh
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:40:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:04 run_atlas
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:04 job.xml
[2025-11-28 02:40:23] -rw-r--r--. 2 boincer umatlas 410094312 Nov 27 00:04 EVNT.47483658._002372.pool.root.1
[2025-11-28 02:40:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-28 02:40:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:04 shared
[2025-11-28 02:40:23] -rw-r--r--. 2 boincer umatlas    590113 Nov 27 00:04 input.tar.gz
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:04 boinc_lockfile
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:04 pandaJob.out
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas        57 Nov 27 00:04 setup.sh.local
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas    991570 Nov 27 00:04 agis_schedconf.cvmfs.json
[2025-11-28 02:40:23] drwx------. 5 boincer umatlas      4096 Nov 27 00:04 pilot3
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas       533 Nov 28 01:05 boinc_task_state.xml
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas 921609337 Nov 28 02:36 HITS.47556161._003548.pool.root.1
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas      6948 Nov 28 02:37 init_data.xml
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas      1059 Nov 28 02:38 memory_monitor_summary.json
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas   1516240 Nov 28 02:38 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas   2937146 Nov 28 02:38 log.47556161._003548.job.log.tgz.1
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas        95 Nov 28 02:39 pilot_heartbeat.json
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas      8593 Nov 28 02:39 heartbeat.json
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas      4825 Nov 28 02:40 pilotlog.txt
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas  11115042 Nov 28 02:40 log.47556161._003548.job.log.1
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas       353 Nov 28 02:40 output.list
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas       620 Nov 28 02:40 runtime_log
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas  14069760 Nov 28 02:40 result.tar.gz
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas      9340 Nov 28 02:40 runtime_log.err
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas       661 Nov 28 02:40 MAlLDmDAKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdlJKDmT0wUCo.diag
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 02:40 boinc_mmap_file
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas     21783 Nov 28 02:40 stderr.txt
[2025-11-28 02:40:23] -rw-r--r--. 1 boincer umatlas        29 Nov 28 02:40 wrapper_checkpoint.txt
[2025-11-28 02:40:23] HITS file was successfully produced:
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas 921609337 Nov 28 02:36 shared/HITS.pool.root.1
[2025-11-28 02:40:23]  *** Contents of shared directory: ***
[2025-11-28 02:40:23] total 1314840
[2025-11-28 02:40:23] -rw-r--r--. 2 boincer umatlas 410094312 Nov 27 00:04 ATLAS.root_0
[2025-11-28 02:40:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:04 start_atlas.sh
[2025-11-28 02:40:23] -rw-r--r--. 2 boincer umatlas    590113 Nov 27 00:04 input.tar.gz
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas 921609337 Nov 28 02:36 HITS.pool.root.1
[2025-11-28 02:40:23] -rw-------. 1 boincer umatlas  14069760 Nov 28 02:40 result.tar.gz
02:40:25 (2503955): run_atlas exited; CPU time 224684.121827
02:40:25 (2503955): called boinc_finish(0)

</stderr_txt>
]]>

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