Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
07:52:57 (202405): wrapper (7.7.26015): starting
07:52:57 (202405): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 17:34:40] Arguments: --nthreads 8
[2025-11-27 17:34:40] Threads: 8
[2025-11-27 17:34:40] Checking for CVMFS
[2025-11-27 17:34:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 17:34:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 17:34:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 17:34:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 17:34:40] 2.13.2.0 202543 0 24768 153340 3 1 1438521 4194305 0 130560 0 0 100.000 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-27 17:34:40] CVMFS is ok
[2025-11-27 17:34:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 17:34:40] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-27 17:34:40] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-27 17:34:40] Further information can be found at the LHC@home message board.
[2025-11-27 17:34:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 17:34:40] Checking for apptainer binary...
[2025-11-27 17:34:40] Using apptainer found in PATH at /usr/local/bin/apptainer
[2025-11-27 17:34:40] Running /usr/local/bin/apptainer --version
[2025-11-27 17:34:40] apptainer version 1.4.2+328-gce6609921
[2025-11-27 17:34:40] Checking apptainer works with /usr/local/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 17:34:40] ducatixeon3-PowerEdge-T620
[2025-11-27 17:34:40] apptainer works
[2025-11-27 17:34:40] Set ATHENA_PROC_NUMBER=8
[2025-11-27 17:34:40] Set ATHENA_CORE_NUMBER=8
[2025-11-27 17:34:40] Starting ATLAS job with PandaID=6897139749
[2025-11-27 17:34:40] Running command: /usr/local/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:34:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:34:40] 2025-11-27 09:34:01,795 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-27 17:34:40] 2025-11-27 09:34:02,126 | INFO     | time since job start (34837s) is within the limit (172800.0s)
[2025-11-27 17:34:40] 2025-11-27 09:34:03,352 | INFO     | monitor loop #2553: job 0:6897139749 is in state 'finished'
[2025-11-27 17:34:40] 2025-11-27 09:34:03,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:34:40] 2025-11-27 09:34:04,131 | INFO     | time since job start (34839s) is within the limit (172800.0s)
[2025-11-27 17:34:40] 2025-11-27 09:34:04,494 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:34:40] 2025-11-27 09:34:04,495 | INFO     | job 6897139749 has state=finished
[2025-11-27 17:34:40] 2025-11-27 09:34:04,495 | INFO     | preparing for final server update for job 6897139749 in state='finished'
[2025-11-27 17:34:40] 2025-11-27 09:34:04,495 | INFO     | this job has now completed (state=finished)
[2025-11-27 17:34:40] 2025-11-27 09:34:04,495 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 17:34:40] 2025-11-27 09:34:04,495 | INFO     | log transfer has been attempted: DONE
[2025-11-27 17:34:40] 2025-11-27 09:34:04,495 | INFO     | job 6897139749 has finished - writing final server update
[2025-11-27 17:34:40] 2025-11-27 09:34:04,496 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 17:34:40] 2025-11-27 09:34:04,496 | INFO     | executing command: lscpu
[2025-11-27 17:34:40] 2025-11-27 09:34:04,533 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 17:34:40] 2025-11-27 09:34:05,855 | INFO     | monitor loop #2554: job 0:6897139749 is in state 'finished'
[2025-11-27 17:34:40] 2025-11-27 09:34:05,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:34:40] 2025-11-27 09:34:06,136 | INFO     | time since job start (34841s) is within the limit (172800.0s)
[2025-11-27 17:34:40] 2025-11-27 09:34:07,495 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 17:34:40] 2025-11-27 09:34:07,501 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2207.5102500000003
[2025-11-27 17:34:40] 2025-11-27 09:34:07,505 | INFO     | using path: /var/lib/boinc-client/slots/13/PanDA_Pilot-6897139749/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:34:40] 2025-11-27 09:34:07,506 | INFO     | extracted standard info from prmon json
[2025-11-27 17:34:40] 2025-11-27 09:34:07,506 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:34:40] 2025-11-27 09:34:07,506 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:34:40] 2025-11-27 09:34:07,513 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:34:40] 2025-11-27 09:34:07,514 | INFO     | sum of square deviations: 57727919640.073494
[2025-11-27 17:34:40] 2025-11-27 09:34:07,519 | INFO     | sum of deviations: 585848583323.2258
[2025-11-27 17:34:40] 2025-11-27 09:34:07,520 | INFO     | mean x: 1764218614.04028
[2025-11-27 17:34:40] 2025-11-27 09:34:07,520 | INFO     | mean y: 2840457.3380035027
[2025-11-27 17:34:40] 2025-11-27 09:34:07,520 | INFO     | intersect: -17901234072.839317
[2025-11-27 17:34:40] 2025-11-27 09:34:07,520 | INFO     | chi2: 13.07045992865401
[2025-11-27 17:34:40] 2025-11-27 09:34:07,521 | INFO     | sum of square deviations: 56224670562.56491
[2025-11-27 17:34:40] 2025-11-27 09:34:07,526 | INFO     | sum of deviations: 759562176432.823
[2025-11-27 17:34:40] 2025-11-27 09:34:07,526 | INFO     | mean x: 1764218461.540636
[2025-11-27 17:34:40] 2025-11-27 09:34:07,526 | INFO     | mean y: 2858083.768551237
[2025-11-27 17:34:40] 2025-11-27 09:34:07,527 | INFO     | intersect: -23830694001.870228
[2025-11-27 17:34:40] 2025-11-27 09:34:07,527 | INFO     | chi2: 10.318879603413215
[2025-11-27 17:34:40] 2025-11-27 09:34:07,527 | INFO     | current chi2=10.318879603413215 (change=21.05190131227579 %)
[2025-11-27 17:34:40] 2025-11-27 09:34:07,527 | INFO     | right removable region: 565
[2025-11-27 17:34:40] 2025-11-27 09:34:07,528 | INFO     | sum of square deviations: 56224656532.5649
[2025-11-27 17:34:40] 2025-11-27 09:34:07,533 | INFO     | sum of deviations: 397222872265.2159
[2025-11-27 17:34:40] 2025-11-27 09:34:07,533 | INFO     | mean x: 1764218766.540636
[2025-11-27 17:34:40] 2025-11-27 09:34:07,533 | INFO     | mean y: 2859582.012367491
[2025-11-27 17:34:40] 2025-11-27 09:34:07,533 | INFO     | intersect: -12461210257.944353
[2025-11-27 17:34:40] 2025-11-27 09:34:07,534 | INFO     | chi2: 10.098426619028197
[2025-11-27 17:34:40] 2025-11-27 09:34:07,534 | INFO     | current chi2=10.098426619028197 (change=22.738551863123853 %)
[2025-11-27 17:34:40] 2025-11-27 09:34:07,534 | INFO     | left removable region: 10
[2025-11-27 17:34:40] 2025-11-27 09:34:07,535 | INFO     | sum of square deviations: 53009834868.04671
[2025-11-27 17:34:40] 2025-11-27 09:34:07,540 | INFO     | sum of deviations: 445145791434.9681
[2025-11-27 17:34:40] 2025-11-27 09:34:07,540 | INFO     | mean x: 1764218736.0414414
[2025-11-27 17:34:40] 2025-11-27 09:34:07,540 | INFO     | mean y: 2898618.7405405403
[2025-11-27 17:34:40] 2025-11-27 09:34:07,540 | INFO     | intersect: -14811985213.183086
[2025-11-27 17:34:40] 2025-11-27 09:34:07,541 | INFO     | chi2: 4.602048988357374
[2025-11-27 17:34:40] 2025-11-27 09:34:07,541 | INFO     | current memory leak: 8.40 B/s (using 555 data points, chi2=4.60)
[2025-11-27 17:34:40] 2025-11-27 09:34:07,541 | INFO     | could have reported an average CPU frequency of 2486 MHz (23 samples)
[2025-11-27 17:34:40] 2025-11-27 09:34:07,542 | INFO     | ..............................
[2025-11-27 17:34:40] 2025-11-27 09:34:07,542 | INFO     | . Timing measurements:
[2025-11-27 17:34:40] 2025-11-27 09:34:07,542 | INFO     | . get job = 0 s
[2025-11-27 17:34:40] 2025-11-27 09:34:07,542 | INFO     | . initial setup = 5 s
[2025-11-27 17:34:40] 2025-11-27 09:34:07,542 | INFO     | . payload setup = 5 s
[2025-11-27 17:34:40] 2025-11-27 09:34:07,542 | INFO     | . stage-in = 0 s
[2025-11-27 17:34:40] 2025-11-27 09:34:07,542 | INFO     | . payload execution = 34806 s
[2025-11-27 17:34:40] 2025-11-27 09:34:07,542 | INFO     | . stage-out = 6 s
[2025-11-27 17:34:40] 2025-11-27 09:34:07,542 | INFO     | . log creation = 0 s
[2025-11-27 17:34:40] 2025-11-27 09:34:07,542 | INFO     | ..............................
[2025-11-27 17:34:40] 2025-11-27 09:34:07,608 | INFO     | 
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | job summary report
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | --------------------------------------------------
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | PanDA job id: 6897139749
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | task id: 47556161
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | errors: (none)
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | pilot state: finished 
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | transexitcode: 0
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | exeerrorcode: 0
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | exeerrordiag: 
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | exitcode: 0
[2025-11-27 17:34:40] 2025-11-27 09:34:07,609 | INFO     | exitmsg: OK
[2025-11-27 17:34:40] 2025-11-27 09:34:07,610 | INFO     | cpuconsumptiontime: 265305 s
[2025-11-27 17:34:40] 2025-11-27 09:34:07,610 | INFO     | nevents: 1000
[2025-11-27 17:34:40] 2025-11-27 09:34:07,610 | INFO     | neventsw: 0
[2025-11-27 17:34:40] 2025-11-27 09:34:07,610 | INFO     | pid: 213477
[2025-11-27 17:34:40] 2025-11-27 09:34:07,610 | INFO     | pgrp: 213477
[2025-11-27 17:34:40] 2025-11-27 09:34:07,610 | INFO     | corecount: 8
[2025-11-27 17:34:40] 2025-11-27 09:34:07,610 | INFO     | event service: False
[2025-11-27 17:34:40] 2025-11-27 09:34:07,610 | INFO     | sizes: {0: 2284273, 3: 2284535, 11: 2284563, 34815: 2325656, 34822: 2334722, 34827: 2334912}
[2025-11-27 17:34:40] 2025-11-27 09:34:07,610 | INFO     | --------------------------------------------------
[2025-11-27 17:34:40] 2025-11-27 09:34:07,610 | INFO     | 
[2025-11-27 17:34:40] 2025-11-27 09:34:07,610 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/13
[2025-11-27 17:34:40] 2025-11-27 09:34:07,625 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,625 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,625 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,625 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,626 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,626 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,626 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,626 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,626 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,626 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,626 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,626 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,626 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,626 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,626 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,627 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,627 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,627 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:34:40] 2025-11-27 09:34:07,627 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,627 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:34:40] 2025-11-27 09:34:07,627 | INFO     | job 6897139749 has completed (purged errors)
[2025-11-27 17:34:40] 2025-11-27 09:34:07,627 | INFO     | overall cleanup function is called
[2025-11-27 17:34:40] 2025-11-27 09:34:08,640 | INFO     | --- collectZombieJob: --- 10, [213477]
[2025-11-27 17:34:40] 2025-11-27 09:34:08,640 | INFO     | zombie collector waiting for pid 213477
[2025-11-27 17:34:40] 2025-11-27 09:34:08,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:34:40] 2025-11-27 09:34:08,640 | INFO     | collected zombie processes
[2025-11-27 17:34:40] 2025-11-27 09:34:08,641 | INFO     | will attempt to kill all subprocesses of pid=213477
[2025-11-27 17:34:40] 2025-11-27 09:34:08,813 | INFO     | process IDs to be killed: [213477] (in reverse order)
[2025-11-27 17:34:40] 2025-11-27 09:34:08,859 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:34:40] 2025-11-27 09:34:08,860 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:34:40] 2025-11-27 09:34:08,868 | INFO     | did not find any defunct processes belonging to 213477
[2025-11-27 17:34:40] 2025-11-27 09:34:08,875 | INFO     | did not find any defunct processes belonging to 213477
[2025-11-27 17:34:40] 2025-11-27 09:34:08,878 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:34:40] 2025-11-27 09:34:08,878 | INFO     | ready for new job
[2025-11-27 17:34:40] 2025-11-27 09:34:08,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:34:40] 2025-11-27 09:34:08,882 | INFO     | ***************************************
[2025-11-27 17:34:40] 2025-11-27 09:34:08,882 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:34:40] 2025-11-27 09:34:08,882 | INFO     | ***************************************
[2025-11-27 17:34:40] 2025-11-27 09:34:08,882 | INFO     | 
[2025-11-27 17:34:40] 2025-11-27 09:34:08,885 | INFO     | architecture information:
[2025-11-27 17:34:40] 2025-11-27 09:34:08,885 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:34:40] 2025-11-27 09:34:08,899 | INFO     | cat /etc/os-release:
[2025-11-27 17:34:40] NAME="CentOS Linux"
[2025-11-27 17:34:40] VERSION="7 (Core)"
[2025-11-27 17:34:40] ID="centos"
[2025-11-27 17:34:40] ID_LIKE="rhel fedora"
[2025-11-27 17:34:40] VERSION_ID="7"
[2025-11-27 17:34:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:34:40] ANSI_COLOR="0;31"
[2025-11-27 17:34:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:34:40] HOME_URL="https://www.centos.org/"
[2025-11-27 17:34:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:34:40] 
[2025-11-27 17:34:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:34:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:34:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:34:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:34:40] 
[2025-11-27 17:34:40] 2025-11-27 09:34:08,900 | INFO     | ***************************************
[2025-11-27 17:34:40] 2025-11-27 09:34:09,403 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/13
[2025-11-27 17:34:40] 2025-11-27 09:34:09,415 | INFO     | sufficient remaining disk space (444985245696 B)
[2025-11-27 17:34:40] 2025-11-27 09:34:09,416 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:34:40] 2025-11-27 09:34:09,416 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:34:40] 2025-11-27 09:34:09,416 | INFO     | update_server=False
[2025-11-27 17:34:40] 2025-11-27 09:34:09,416 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:34:40] 2025-11-27 09:34:09,416 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:34:40] 2025-11-27 09:34:09,417 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:34:40] 2025-11-27 09:34:09,417 | INFO     | aborting loop
[2025-11-27 17:34:40] 2025-11-27 09:34:09,456 | INFO     | all payload control threads have been joined
[2025-11-27 17:34:40] 2025-11-27 09:34:09,567 | INFO     | all data control threads have been joined
[2025-11-27 17:34:40] 2025-11-27 09:34:09,803 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:34:40] 2025-11-27 09:34:09,930 | INFO     | all job control threads have been joined
[2025-11-27 17:34:40] 2025-11-27 09:34:10,422 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:10,422 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:10,423 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:10,462 | INFO     | [payload] control thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:10,573 | INFO     | [data] control thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:10,616 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:10,797 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:10,936 | INFO     | [job] control thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:10,938 | INFO     | [job] validate thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:10,963 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:11,263 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:11,367 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:11,649 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:11,809 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:12,017 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:12,366 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:34:40] 2025-11-27 09:34:16,372 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:34:40] 2025-11-27 09:34:16,803 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:34:40] 2025-11-27 09:34:17,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140170871981888)>', '<ExcThread(monitor, started 140170376488704)>']
[2025-11-27 17:34:40] 2025-11-27 09:34:22,353 | INFO     | all workflow threads have been joined
[2025-11-27 17:34:40] 2025-11-27 09:34:22,353 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:34:40] 2025-11-27 09:34:22,354 | INFO     | traces error code: 0
[2025-11-27 17:34:40] 2025-11-27 09:34:22,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:34:40] 2025-11-27 09:34:39,404 | INFO     | PID=206768 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 17:34:40] 2025-11-27 09:34:39,406 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:34:40] 2025-11-27 09:34:39,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:34:40] 2025-11-27 09:34:39,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:34:40] 2025-11-27 09:34:39,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:34:40] 2025-11-27 09:34:39,406 | INFO     | [monitor] control thread has ended
[2025-11-27 17:34:40] 2025-11-27 09:34:39,507 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:34:40] 2025-11-27 09:34:39,510 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:34:40] 2025-11-27 09:34:39,512 [wrapper] pilotpid: 206768
[2025-11-27 17:34:40] 2025-11-27 09:34:39,514 [wrapper] Pilot exit status: 0
[2025-11-27 17:34:40] 2025-11-27 09:34:39,522 [wrapper] pandaids: 6897139749
[2025-11-27 17:34:40] 2025-11-27 09:34:39,554 [wrapper] cleanup supervisor_pilot  289108 206769
[2025-11-27 17:34:40] 2025-11-27 09:34:39,556 [wrapper] Test setup, not cleaning
[2025-11-27 17:34:40] 2025-11-27 09:34:39,559 [wrapper] apfmon messages muted
[2025-11-27 17:34:40] 2025-11-27 09:34:39,561 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:34:40] 2025-11-27 09:34:39,563 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:34:40]  *** Error codes and diagnostics ***
[2025-11-27 17:34:40]     "exeErrorCode": 0,
[2025-11-27 17:34:40]     "exeErrorDiag": "",
[2025-11-27 17:34:40]     "pilotErrorCode": 0,
[2025-11-27 17:34:40]     "pilotErrorDiag": "",
[2025-11-27 17:34:40]  *** Listing of results directory ***
[2025-11-27 17:34:40] total 1298568
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc    576529 Nov 26 00:48 pilot3.tar.gz
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc      5112 Nov 26 00:55 queuedata.json
[2025-11-27 17:34:40] -rwx------ 1 boinc boinc     36292 Nov 26 00:56 runpilot2-wrapper.sh
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc       100 Nov 27 07:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:34:40] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 07:52 run_atlas
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc       105 Nov 27 07:52 job.xml
[2025-11-27 17:34:40] -rw-r--r-- 2 boinc boinc 409048900 Nov 27 07:52 EVNT.47483658._002199.pool.root.1
[2025-11-27 17:34:40] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:52 start_atlas.sh
[2025-11-27 17:34:40] drwxrwx--x 2 boinc boinc      4096 Nov 27 07:52 shared
[2025-11-27 17:34:40] -rw-r--r-- 2 boinc boinc    590108 Nov 27 07:52 input.tar.gz
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc      6014 Nov 27 07:52 init_data.xml
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:52 boinc_setup_complete
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc       110 Nov 27 07:52 stderr.txt
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:52 boinc_lockfile
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc      2786 Nov 27 07:53 pandaJob.out
[2025-11-27 17:34:40] -rw------- 1 boinc boinc    991538 Nov 27 07:53 agis_schedconf.cvmfs.json
[2025-11-27 17:34:40] drwx------ 5 boinc boinc      4096 Nov 27 07:53 pilot3
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc       533 Nov 27 17:16 boinc_task_state.xml
[2025-11-27 17:34:40] -rw------- 1 boinc boinc 903436800 Nov 27 17:33 HITS.47556161._001829.pool.root.1
[2025-11-27 17:34:40] -rw------- 1 boinc boinc      1042 Nov 27 17:33 memory_monitor_summary.json
[2025-11-27 17:34:40] -rw------- 1 boinc boinc   1516240 Nov 27 17:34 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:34:40] -rw------- 1 boinc boinc   1836467 Nov 27 17:34 log.47556161._001829.job.log.tgz.1
[2025-11-27 17:34:40] -rw------- 1 boinc boinc      8634 Nov 27 17:34 heartbeat.json
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc      8192 Nov 27 17:34 boinc_mmap_file
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc        29 Nov 27 17:34 wrapper_checkpoint.txt
[2025-11-27 17:34:40] -rw------- 1 boinc boinc        95 Nov 27 17:34 pilot_heartbeat.json
[2025-11-27 17:34:40] -rw------- 1 boinc boinc       746 Nov 27 17:34 pilotlog.txt
[2025-11-27 17:34:40] -rw------- 1 boinc boinc   4845547 Nov 27 17:34 log.47556161._001829.job.log.1
[2025-11-27 17:34:40] -rw------- 1 boinc boinc       353 Nov 27 17:34 output.list
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc       620 Nov 27 17:34 runtime_log
[2025-11-27 17:34:40] -rw------- 1 boinc boinc   6696960 Nov 27 17:34 result.tar.gz
[2025-11-27 17:34:40] -rw------- 1 boinc boinc       670 Nov 27 17:34 YwgKDmcWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgYJKDmRX59wn.diag
[2025-11-27 17:34:40] -rw-r--r-- 1 boinc boinc      8995 Nov 27 17:34 runtime_log.err
[2025-11-27 17:34:40] HITS file was successfully produced:
[2025-11-27 17:34:40] -rw------- 1 boinc boinc 903436800 Nov 27 17:33 shared/HITS.pool.root.1
[2025-11-27 17:34:40]  *** Contents of shared directory: ***
[2025-11-27 17:34:40] total 1288868
[2025-11-27 17:34:40] -rw-r--r-- 2 boinc boinc 409048900 Nov 27 07:52 ATLAS.root_0
[2025-11-27 17:34:40] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:52 start_atlas.sh
[2025-11-27 17:34:40] -rw-r--r-- 2 boinc boinc    590108 Nov 27 07:52 input.tar.gz
[2025-11-27 17:34:40] -rw------- 1 boinc boinc 903436800 Nov 27 17:33 HITS.pool.root.1
[2025-11-27 17:34:40] -rw------- 1 boinc boinc   6696960 Nov 27 17:34 result.tar.gz
17:34:41 (202405): run_atlas exited; CPU time 265867.072430
17:34:41 (202405): called boinc_finish(0)

</stderr_txt>
]]>

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