Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:05 (3921371): wrapper (7.7.26015): starting
00:03:05 (3921371): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:03:05] Arguments: --nthreads 12
[2025-11-27 00:03:05] Threads: 12
[2025-11-27 00:03:05] Checking for CVMFS
[2025-11-27 00:03:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:03:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:03:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:03:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:03:05] 2.13.2.0 6892 37709 172144 153347 2 351 35196275 40960001 22575 16776704 0 100972350 99.739 64932103 36431 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:03:05] CVMFS is ok
[2025-11-27 00:03:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:03:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:03:05] Further information can be found at the LHC@home message board.
[2025-11-27 00:03:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:03:05] Checking for apptainer binary...
[2025-11-27 00:03:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:03:05] Running /usr/bin/apptainer --version
[2025-11-27 00:03:05] apptainer version 1.4.4-1.el9
[2025-11-27 00:03:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:03:06] c-212-5.aglt2.org
[2025-11-27 00:03:06] apptainer works
[2025-11-27 00:03:06] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:03:06] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:03:06] Starting ATLAS job with PandaID=6892547953
[2025-11-27 00:03:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:54:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:54:20] 2025-11-27 22:53:06,287 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:54:20] 2025-11-27 22:53:06,748 | INFO     | time since job start (64182s) is within the limit (172800.0s)
[2025-11-27 17:54:20] 2025-11-27 22:53:08,756 | INFO     | time since job start (64184s) is within the limit (172800.0s)
[2025-11-27 17:54:20] 2025-11-27 22:53:08,794 | INFO     | monitor loop #4253: job 0:6892547953 is in state 'finished'
[2025-11-27 17:54:20] 2025-11-27 22:53:08,794 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:54:20] 2025-11-27 22:53:10,385 | INFO     | PID=3925117 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 17:54:20] 2025-11-27 22:53:10,386 | INFO     | .. there are 19 such processes running
[2025-11-27 17:54:20] 2025-11-27 22:53:11,299 | INFO     | monitor loop #4254: job 0:6892547953 is in state 'finished'
[2025-11-27 17:54:20] 2025-11-27 22:53:11,299 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:54:20] 2025-11-27 22:53:11,387 | INFO     | time since job start (64187s) is within the limit (172800.0s)
[2025-11-27 17:54:20] 2025-11-27 22:53:13,394 | INFO     | time since job start (64189s) is within the limit (172800.0s)
[2025-11-27 17:54:20] 2025-11-27 22:53:13,804 | INFO     | monitor loop #4255: job 0:6892547953 is in state 'finished'
[2025-11-27 17:54:20] 2025-11-27 22:53:13,804 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:54:20] 2025-11-27 22:53:15,404 | INFO     | time since job start (64191s) is within the limit (172800.0s)
[2025-11-27 17:54:20] 2025-11-27 22:53:16,307 | INFO     | monitor loop #4256: job 0:6892547953 is in state 'finished'
[2025-11-27 17:54:20] 2025-11-27 22:53:16,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:54:20] 2025-11-27 22:53:17,142 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 17:54:20] 2025-11-27 22:53:17,148 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2957.6099583333325
[2025-11-27 17:54:20] 2025-11-27 22:53:17,165 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6892547953/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:54:20] 2025-11-27 22:53:17,166 | INFO     | extracted standard info from prmon json
[2025-11-27 17:54:20] 2025-11-27 22:53:17,166 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:54:20] 2025-11-27 22:53:17,167 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:54:20] 2025-11-27 22:53:17,182 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:54:20] 2025-11-27 22:53:17,184 | INFO     | sum of square deviations: 361018330001.70593
[2025-11-27 17:54:20] 2025-11-27 22:53:17,217 | INFO     | sum of deviations: 2624901789036.011
[2025-11-27 17:54:20] 2025-11-27 22:53:17,218 | INFO     | mean x: 1764251895.3963878
[2025-11-27 17:54:20] 2025-11-27 22:53:17,218 | INFO     | mean y: 3439414.160646388
[2025-11-27 17:54:20] 2025-11-27 22:53:17,218 | INFO     | intersect: -12824130744.158653
[2025-11-27 17:54:20] 2025-11-27 22:53:17,219 | INFO     | chi2: 16.78117613553175
[2025-11-27 17:54:20] 2025-11-27 22:53:17,220 | INFO     | sum of square deviations: 355895809843.6391
[2025-11-27 17:54:20] 2025-11-27 22:53:17,241 | INFO     | sum of deviations: 3084227783909.8613
[2025-11-27 17:54:20] 2025-11-27 22:53:17,242 | INFO     | mean x: 1764251742.9054441
[2025-11-27 17:54:20] 2025-11-27 22:53:17,242 | INFO     | mean y: 3453087.251193887
[2025-11-27 17:54:20] 2025-11-27 22:53:17,242 | INFO     | intersect: -15285724511.302153
[2025-11-27 17:54:20] 2025-11-27 22:53:17,243 | INFO     | chi2: 12.88457280054434
[2025-11-27 17:54:20] 2025-11-27 22:53:17,243 | INFO     | current chi2=12.88457280054434 (change=23.22008483503673 %)
[2025-11-27 17:54:20] 2025-11-27 22:53:17,243 | INFO     | right removable region: 1046
[2025-11-27 17:54:20] 2025-11-27 22:53:17,244 | INFO     | sum of square deviations: 355894592893.6389
[2025-11-27 17:54:20] 2025-11-27 22:53:17,263 | INFO     | sum of deviations: 2191715308926.3135
[2025-11-27 17:54:20] 2025-11-27 22:53:17,263 | INFO     | mean x: 1764252047.9054441
[2025-11-27 17:54:20] 2025-11-27 22:53:17,264 | INFO     | mean y: 3452302.962750716
[2025-11-27 17:54:20] 2025-11-27 22:53:17,264 | INFO     | intersect: -10861388859.022978
[2025-11-27 17:54:20] 2025-11-27 22:53:17,265 | INFO     | chi2: 13.814238617726314
[2025-11-27 17:54:20] 2025-11-27 22:53:17,265 | INFO     | current chi2=13.814238617726314 (change=17.680152415082333 %)
[2025-11-27 17:54:20] 2025-11-27 22:53:17,265 | INFO     | left removable region: 10
[2025-11-27 17:54:20] 2025-11-27 22:53:17,266 | INFO     | sum of square deviations: 344795049816.9765
[2025-11-27 17:54:20] 2025-11-27 22:53:17,290 | INFO     | sum of deviations: 2499800139288.4697
[2025-11-27 17:54:20] 2025-11-27 22:53:17,290 | INFO     | mean x: 1764252017.4237452
[2025-11-27 17:54:20] 2025-11-27 22:53:17,290 | INFO     | mean y: 3477063.3223938225
[2025-11-27 17:54:20] 2025-11-27 22:53:17,290 | INFO     | intersect: -12787534412.152378
[2025-11-27 17:54:20] 2025-11-27 22:53:17,291 | INFO     | chi2: 7.9178869617312895
[2025-11-27 17:54:20] 2025-11-27 22:53:17,292 | INFO     | current memory leak: 7.25 B/s (using 1036 data points, chi2=7.92)
[2025-11-27 17:54:20] 2025-11-27 22:53:17,293 | INFO     | could have reported an average CPU frequency of 2963 MHz (39 samples)
[2025-11-27 17:54:20] 2025-11-27 22:53:17,293 | INFO     | ..............................
[2025-11-27 17:54:20] 2025-11-27 22:53:17,293 | INFO     | . Timing measurements:
[2025-11-27 17:54:20] 2025-11-27 22:53:17,293 | INFO     | . get job = 0 s
[2025-11-27 17:54:20] 2025-11-27 22:53:17,293 | INFO     | . initial setup = 2 s
[2025-11-27 17:54:20] 2025-11-27 22:53:17,293 | INFO     | . payload setup = 9 s
[2025-11-27 17:54:20] 2025-11-27 22:53:17,293 | INFO     | . stage-in = 0 s
[2025-11-27 17:54:20] 2025-11-27 22:53:17,293 | INFO     | . payload execution = 64140 s
[2025-11-27 17:54:20] 2025-11-27 22:53:17,294 | INFO     | . stage-out = 3 s
[2025-11-27 17:54:20] 2025-11-27 22:53:17,294 | INFO     | . log creation = 1 s
[2025-11-27 17:54:20] 2025-11-27 22:53:17,294 | INFO     | ..............................
[2025-11-27 17:54:20] 2025-11-27 22:53:17,413 | INFO     | time since job start (64193s) is within the limit (172800.0s)
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | 
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | job summary report
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | --------------------------------------------------
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | PanDA job id: 6892547953
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | task id: 47493029
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | errors: (none)
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | pilot state: finished 
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | transexitcode: 0
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | exeerrorcode: 0
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | exeerrordiag: 
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | exitcode: 0
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | exitmsg: OK
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | cpuconsumptiontime: 213797 s
[2025-11-27 17:54:20] 2025-11-27 22:53:17,738 | INFO     | nevents: 1000
[2025-11-27 17:54:20] 2025-11-27 22:53:17,739 | INFO     | neventsw: 0
[2025-11-27 17:54:20] 2025-11-27 22:53:17,739 | INFO     | pid: 3931502
[2025-11-27 17:54:20] 2025-11-27 22:53:17,739 | INFO     | pgrp: 3931502
[2025-11-27 17:54:20] 2025-11-27 22:53:17,739 | INFO     | corecount: 12
[2025-11-27 17:54:20] 2025-11-27 22:53:17,739 | INFO     | event service: False
[2025-11-27 17:54:20] 2025-11-27 22:53:17,739 | INFO     | sizes: {0: 2284026, 1: 2284281, 8: 2284543, 12: 2284571, 64153: 2339913, 64157: 2348907, 64159: 2349091, 64175: 2349337}
[2025-11-27 17:54:20] 2025-11-27 22:53:17,739 | INFO     | --------------------------------------------------
[2025-11-27 17:54:20] 2025-11-27 22:53:17,739 | INFO     | 
[2025-11-27 17:54:20] 2025-11-27 22:53:17,739 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 17:54:20] 2025-11-27 22:53:17,792 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,792 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,792 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,794 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:54:20] 2025-11-27 22:53:17,794 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,794 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:54:20] 2025-11-27 22:53:17,794 | INFO     | job 6892547953 has completed (purged errors)
[2025-11-27 17:54:20] 2025-11-27 22:53:17,794 | INFO     | overall cleanup function is called
[2025-11-27 17:54:20] 2025-11-27 22:53:18,816 | INFO     | --- collectZombieJob: --- 10, [3931502]
[2025-11-27 17:54:20] 2025-11-27 22:53:18,816 | INFO     | zombie collector waiting for pid 3931502
[2025-11-27 17:54:20] 2025-11-27 22:53:18,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:54:20] 2025-11-27 22:53:18,816 | INFO     | collected zombie processes
[2025-11-27 17:54:20] 2025-11-27 22:53:18,817 | INFO     | will attempt to kill all subprocesses of pid=3931502
[2025-11-27 17:54:20] 2025-11-27 22:53:19,240 | INFO     | process IDs to be killed: [3931502] (in reverse order)
[2025-11-27 17:54:20] 2025-11-27 22:53:19,606 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:54:20] 2025-11-27 22:53:19,607 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:54:20] 2025-11-27 22:53:19,707 | INFO     | did not find any defunct processes belonging to 3931502
[2025-11-27 17:54:20] 2025-11-27 22:53:19,790 | INFO     | did not find any defunct processes belonging to 3931502
[2025-11-27 17:54:20] 2025-11-27 22:53:19,795 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:54:20] 2025-11-27 22:53:19,795 | INFO     | ready for new job
[2025-11-27 17:54:20] 2025-11-27 22:53:19,795 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:54:20] 2025-11-27 22:53:19,800 | INFO     | ***************************************
[2025-11-27 17:54:20] 2025-11-27 22:53:19,800 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:54:20] 2025-11-27 22:53:19,800 | INFO     | ***************************************
[2025-11-27 17:54:20] 2025-11-27 22:53:19,800 | INFO     | 
[2025-11-27 17:54:20] 2025-11-27 22:53:19,806 | INFO     | architecture information:
[2025-11-27 17:54:20] 2025-11-27 22:53:19,807 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:54:20] 2025-11-27 22:53:19,840 | INFO     | cat /etc/os-release:
[2025-11-27 17:54:20] NAME="CentOS Linux"
[2025-11-27 17:54:20] VERSION="7 (Core)"
[2025-11-27 17:54:20] ID="centos"
[2025-11-27 17:54:20] ID_LIKE="rhel fedora"
[2025-11-27 17:54:20] VERSION_ID="7"
[2025-11-27 17:54:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:54:20] ANSI_COLOR="0;31"
[2025-11-27 17:54:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:54:20] HOME_URL="https://www.centos.org/"
[2025-11-27 17:54:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:54:20] 
[2025-11-27 17:54:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:54:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:54:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:54:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:54:20] 
[2025-11-27 17:54:20] 2025-11-27 22:53:19,840 | INFO     | ***************************************
[2025-11-27 17:54:20] 2025-11-27 22:53:20,344 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 17:54:20] 2025-11-27 22:53:20,404 | INFO     | sufficient remaining disk space (120183586816 B)
[2025-11-27 17:54:20] 2025-11-27 22:53:20,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:54:20] 2025-11-27 22:53:20,405 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:54:20] 2025-11-27 22:53:20,405 | INFO     | update_server=False
[2025-11-27 17:54:20] 2025-11-27 22:53:20,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:54:20] 2025-11-27 22:53:20,406 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:54:20] 2025-11-27 22:53:20,416 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:54:20] 2025-11-27 22:53:20,416 | INFO     | aborting loop
[2025-11-27 17:54:20] 2025-11-27 22:53:20,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:54:20] 2025-11-27 22:53:20,572 | INFO     | all payload control threads have been joined
[2025-11-27 17:54:20] 2025-11-27 22:53:21,123 | INFO     | all data control threads have been joined
[2025-11-27 17:54:20] 2025-11-27 22:53:21,411 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:21,422 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:21,584 | INFO     | [payload] control thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:21,733 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:21,772 | INFO     | all job control threads have been joined
[2025-11-27 17:54:20] 2025-11-27 22:53:21,789 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:21,806 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:22,129 | INFO     | [data] control thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:22,219 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:22,311 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:22,316 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:22,385 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:54:20] 2025-11-27 22:53:22,412 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:22,489 | INFO     | [job] validate thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:22,517 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:22,779 | INFO     | [job] control thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:23,391 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:24,464 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:54:20] 2025-11-27 22:53:51,081 | INFO     | PID=3925117 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:54:20] 2025-11-27 22:53:51,081 | INFO     | .. there are 19 such processes running
[2025-11-27 17:54:20] 2025-11-27 22:53:51,081 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:54:20] 2025-11-27 22:53:51,081 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:54:20] 2025-11-27 22:53:51,081 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:54:20] 2025-11-27 22:54:14,367 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:54:20] 2025-11-27 22:54:14,756 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140589992494912)>', '<ExcThread(monitor, started 140589504915200)>']
[2025-11-27 17:54:20] 2025-11-27 22:54:15,229 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:54:20] 2025-11-27 22:54:15,229 | INFO     | [monitor] control thread has ended
[2025-11-27 17:54:20] 2025-11-27 22:54:19,782 | INFO     | all workflow threads have been joined
[2025-11-27 17:54:20] 2025-11-27 22:54:19,782 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:54:20] 2025-11-27 22:54:19,782 | INFO     | traces error code: 0
[2025-11-27 17:54:20] 2025-11-27 22:54:19,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:54:20] 2025-11-27 22:54:20,018 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:54:20] 2025-11-27 22:54:20,050 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:54:20] 2025-11-27 22:54:20,094 [wrapper] pilotpid: 3925117
[2025-11-27 17:54:20] 2025-11-27 22:54:20,129 [wrapper] Pilot exit status: 0
[2025-11-27 17:54:20] 2025-11-27 22:54:20,234 [wrapper] pandaids: 6892547953
[2025-11-27 17:54:20] 2025-11-27 22:54:20,511 [wrapper] cleanup supervisor_pilot 2236737 3925118
[2025-11-27 17:54:20] 2025-11-27 22:54:20,541 [wrapper] Test setup, not cleaning
[2025-11-27 17:54:20] 2025-11-27 22:54:20,563 [wrapper] apfmon messages muted
[2025-11-27 17:54:20] 2025-11-27 22:54:20,583 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:54:20] 2025-11-27 22:54:20,586 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:54:20]  *** Error codes and diagnostics ***
[2025-11-27 17:54:20]     "exeErrorCode": 0,
[2025-11-27 17:54:20]     "exeErrorDiag": "",
[2025-11-27 17:54:20]     "pilotErrorCode": 0,
[2025-11-27 17:54:20]     "pilotErrorDiag": "",
[2025-11-27 17:54:20]  *** Listing of results directory ***
[2025-11-27 17:54:20] total 1334080
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 03:32 pilot3.tar.gz
[2025-11-27 17:54:20] -rwx------. 1 boincer umatlas     36292 Nov 19 03:33 runpilot2-wrapper.sh
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 03:33 queuedata.json
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:54:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:03 run_atlas
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:03 job.xml
[2025-11-27 17:54:20] -rw-r--r--. 2 boincer umatlas 410700467 Nov 27 00:03 EVNT.47493027._000325.pool.root.1
[2025-11-27 17:54:20] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:03 start_atlas.sh
[2025-11-27 17:54:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:03 shared
[2025-11-27 17:54:20] -rw-r--r--. 2 boincer umatlas    590098 Nov 27 00:03 input.tar.gz
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:03 boinc_lockfile
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas      2772 Nov 27 00:03 pandaJob.out
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-27 17:54:20] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:17 boinc_task_state.xml
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 17:49 init_data.xml
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas 928910685 Nov 27 17:52 HITS.47493029._003206.pool.root.1
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas      1071 Nov 27 17:52 memory_monitor_summary.json
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas        95 Nov 27 17:52 pilot_heartbeat.json
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas   2652285 Nov 27 17:52 log.47493029._003206.job.log.tgz.1
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas      8627 Nov 27 17:53 heartbeat.json
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:54 boinc_mmap_file
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:54 wrapper_checkpoint.txt
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas      4825 Nov 27 17:54 pilotlog.txt
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas   8633381 Nov 27 17:54 log.47493029._003206.job.log.1
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas       353 Nov 27 17:54 output.list
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:54 runtime_log
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas  11304960 Nov 27 17:54 result.tar.gz
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas       663 Nov 27 17:54 tWBMDmXosf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmd6FKDm7ixsxn.diag
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas      8701 Nov 27 17:54 runtime_log.err
[2025-11-27 17:54:20] -rw-r--r--. 1 boincer umatlas     21863 Nov 27 17:54 stderr.txt
[2025-11-27 17:54:20] HITS file was successfully produced:
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas 928910685 Nov 27 17:52 shared/HITS.pool.root.1
[2025-11-27 17:54:20]  *** Contents of shared directory: ***
[2025-11-27 17:54:20] total 1319860
[2025-11-27 17:54:20] -rw-r--r--. 2 boincer umatlas 410700467 Nov 27 00:03 ATLAS.root_0
[2025-11-27 17:54:20] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:03 start_atlas.sh
[2025-11-27 17:54:20] -rw-r--r--. 2 boincer umatlas    590098 Nov 27 00:03 input.tar.gz
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas 928910685 Nov 27 17:52 HITS.pool.root.1
[2025-11-27 17:54:20] -rw-------. 1 boincer umatlas  11304960 Nov 27 17:54 result.tar.gz
17:54:22 (3921371): run_atlas exited; CPU time 213960.963537
17:54:22 (3921371): called boinc_finish(0)

</stderr_txt>
]]>

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