Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:36:40 (3948002): wrapper (7.7.26015): starting
18:36:40 (3948002): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:36:40] Arguments: --nthreads 8
[2025-11-26 18:36:40] Threads: 8
[2025-11-26 18:36:40] Checking for CVMFS
[2025-11-26 18:36:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:36:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:36:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:36:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:36:42] 2.13.3.0 7558 30719 339256 153340 0 315 24930914 32935936 28405 16776704 0 129219955 99.529 159213521 38249 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 18:36:42] CVMFS is ok
[2025-11-26 18:36:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:36:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:36:42] Further information can be found at the LHC@home message board.
[2025-11-26 18:36:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:36:42] Checking for apptainer binary...
[2025-11-26 18:36:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:36:42] Running /usr/bin/apptainer --version
[2025-11-26 18:36:42] apptainer version 1.4.4-1.el9
[2025-11-26 18:36:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:36:43] c6-6-39-2.aglt2.org
[2025-11-26 18:36:43] apptainer works
[2025-11-26 18:36:43] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:36:43] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:36:43] Starting ATLAS job with PandaID=6897394821
[2025-11-26 18:36:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
04:20:05 (3948002): BOINC client no longer exists - exiting
04:20:05 (3948002): timer handler: client dead, exiting
04:29:59 (1928509): wrapper (7.7.26015): starting
04:29:59 (1928509): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 04:29:59] Arguments: --nthreads 9
[2025-11-27 04:29:59] Threads: 9
[2025-11-27 04:29:59] This job has been restarted, cleaning up previous attempt
[2025-11-27 04:29:59] Checking for CVMFS
[2025-11-27 04:29:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:29:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:29:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:29:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:29:59] 2.13.3.0 7558 31312 337540 153358 0 179 31446370 32935937 24213 16776704 0 131926183 99.533 161199934 38255 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 04:29:59] CVMFS is ok
[2025-11-27 04:29:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:29:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:29:59] Further information can be found at the LHC@home message board.
[2025-11-27 04:29:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:29:59] Checking for apptainer binary...
[2025-11-27 04:29:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:29:59] Running /usr/bin/apptainer --version
[2025-11-27 04:29:59] apptainer version 1.4.4-1.el9
[2025-11-27 04:29:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:29:59] c6-6-39-2.aglt2.org
[2025-11-27 04:29:59] apptainer works
[2025-11-27 04:29:59] Set ATHENA_PROC_NUMBER=9
[2025-11-27 04:29:59] Set ATHENA_CORE_NUMBER=9
[2025-11-27 04:30:00] Starting ATLAS job with PandaID=6897394821
[2025-11-27 04:30:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:31:00]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:31:00] 2025-11-27 20:02:21,237 | INFO     | time since job start (37931s) is within the limit (172800.0s)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,293 | INFO     | monitor loop #2483: job 0:6897394821 is in state 'finished'
[2025-11-27 17:31:00] 2025-11-27 20:02:21,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,753 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:31:00] 2025-11-27 20:02:21,756 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2815.200446428571
[2025-11-27 17:31:00] 2025-11-27 20:02:21,765 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897394821/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,766 | INFO     | extracted standard info from prmon json
[2025-11-27 17:31:00] 2025-11-27 20:02:21,766 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:31:00] 2025-11-27 20:02:21,766 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:31:00] 2025-11-27 20:02:21,776 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:31:00] 2025-11-27 20:02:21,776 | INFO     | sum of square deviations: 74624272253.67812
[2025-11-27 17:31:00] 2025-11-27 20:02:21,783 | INFO     | sum of deviations: 551069329066.1594
[2025-11-27 17:31:00] 2025-11-27 20:02:21,783 | INFO     | mean x: 1764254778.9389067
[2025-11-27 17:31:00] 2025-11-27 20:02:21,783 | INFO     | mean y: 3049167.5305466237
[2025-11-27 17:31:00] 2025-11-27 20:02:21,783 | INFO     | intersect: -13025241333.268396
[2025-11-27 17:31:00] 2025-11-27 20:02:21,784 | INFO     | chi2: 8.26068930825344
[2025-11-27 17:31:00] 2025-11-27 20:02:21,785 | INFO     | sum of square deviations: 72839479190.74301
[2025-11-27 17:31:00] 2025-11-27 20:02:21,792 | INFO     | sum of deviations: 782693351828.8004
[2025-11-27 17:31:00] 2025-11-27 20:02:21,792 | INFO     | mean x: 1764254626.4505672
[2025-11-27 17:31:00] 2025-11-27 20:02:21,792 | INFO     | mean y: 3068954.1410048623
[2025-11-27 17:31:00] 2025-11-27 20:02:21,792 | INFO     | intersect: -18954649887.313232
[2025-11-27 17:31:00] 2025-11-27 20:02:21,793 | INFO     | chi2: 4.692917510523561
[2025-11-27 17:31:00] 2025-11-27 20:02:21,793 | INFO     | current chi2=4.692917510523561 (change=43.189758924418555 %)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,793 | INFO     | sum of square deviations: 71083384340.13551
[2025-11-27 17:31:00] 2025-11-27 20:02:21,800 | INFO     | sum of deviations: 949405395538.1617
[2025-11-27 17:31:00] 2025-11-27 20:02:21,800 | INFO     | mean x: 1764254473.9624183
[2025-11-27 17:31:00] 2025-11-27 20:02:21,800 | INFO     | mean y: 3083413.4852941176
[2025-11-27 17:31:00] 2025-11-27 20:02:21,801 | INFO     | intersect: -23560689361.702015
[2025-11-27 17:31:00] 2025-11-27 20:02:21,801 | INFO     | chi2: 2.650439398349256
[2025-11-27 17:31:00] 2025-11-27 20:02:21,801 | INFO     | current chi2=2.650439398349256 (change=43.52256581527762 %)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,802 | INFO     | sum of square deviations: 69355569337.05765
[2025-11-27 17:31:00] 2025-11-27 20:02:21,808 | INFO     | sum of deviations: 1028621130609.7953
[2025-11-27 17:31:00] 2025-11-27 20:02:21,809 | INFO     | mean x: 1764254321.4662273
[2025-11-27 17:31:00] 2025-11-27 20:02:21,809 | INFO     | mean y: 3090388.477759473
[2025-11-27 17:31:00] 2025-11-27 20:02:21,809 | INFO     | intersect: -26162786298.517616
[2025-11-27 17:31:00] 2025-11-27 20:02:21,810 | INFO     | chi2: 2.0113876105973545
[2025-11-27 17:31:00] 2025-11-27 20:02:21,810 | INFO     | current chi2=2.0113876105973545 (change=24.111163913044567 %)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,810 | INFO     | right removable region: 606
[2025-11-27 17:31:00] 2025-11-27 20:02:21,811 | INFO     | sum of square deviations: 72839008762.53844
[2025-11-27 17:31:00] 2025-11-27 20:02:21,817 | INFO     | sum of deviations: 392478380675.99976
[2025-11-27 17:31:00] 2025-11-27 20:02:21,818 | INFO     | mean x: 1764254931.4473257
[2025-11-27 17:31:00] 2025-11-27 20:02:21,818 | INFO     | mean y: 3062682.0
[2025-11-27 17:31:00] 2025-11-27 20:02:21,818 | INFO     | intersect: -9503270948.259607
[2025-11-27 17:31:00] 2025-11-27 20:02:21,819 | INFO     | chi2: 6.427393150798707
[2025-11-27 17:31:00] 2025-11-27 20:02:21,819 | INFO     | current chi2=6.427393150798707 (change=22.19301669683964 %)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,819 | INFO     | left removable region: 10
[2025-11-27 17:31:00] 2025-11-27 20:02:21,820 | INFO     | sum of square deviations: 65652933622.71624
[2025-11-27 17:31:00] 2025-11-27 20:02:21,826 | INFO     | sum of deviations: 817516512680.1353
[2025-11-27 17:31:00] 2025-11-27 20:02:21,826 | INFO     | mean x: 1764254595.978188
[2025-11-27 17:31:00] 2025-11-27 20:02:21,826 | INFO     | mean y: 3108727.087248322
[2025-11-27 17:31:00] 2025-11-27 20:02:21,827 | INFO     | intersect: -21965555659.982025
[2025-11-27 17:31:00] 2025-11-27 20:02:21,827 | INFO     | chi2: 0.07351814436813761
[2025-11-27 17:31:00] 2025-11-27 20:02:21,827 | INFO     | current memory leak: 12.45 B/s (using 596 data points, chi2=0.07)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,828 | INFO     | could have reported an average CPU frequency of 2923 MHz (24 samples)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,829 | INFO     | ..............................
[2025-11-27 17:31:00] 2025-11-27 20:02:21,829 | INFO     | . Timing measurements:
[2025-11-27 17:31:00] 2025-11-27 20:02:21,829 | INFO     | . get job = 0 s
[2025-11-27 17:31:00] 2025-11-27 20:02:21,829 | INFO     | . initial setup = 2 s
[2025-11-27 17:31:00] 2025-11-27 20:02:21,829 | INFO     | . payload setup = 5 s
[2025-11-27 17:31:00] 2025-11-27 20:02:21,829 | INFO     | . stage-in = 0 s
[2025-11-27 17:31:00] 2025-11-27 20:02:21,829 | INFO     | . payload execution = 37886 s
[2025-11-27 17:31:00] 2025-11-27 20:02:21,829 | INFO     | . stage-out = 4 s
[2025-11-27 17:31:00] 2025-11-27 20:02:21,829 | INFO     | . log creation = 0 s
[2025-11-27 17:31:00] 2025-11-27 20:02:21,829 | INFO     | ..............................
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | 
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | job summary report
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | --------------------------------------------------
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | PanDA job id: 6897394821
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | task id: 47556173
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | errors: (none)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | pilot state: finished 
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | transexitcode: 0
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | exeerrorcode: 0
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | exeerrordiag: 
[2025-11-27 17:31:00] 2025-11-27 20:02:21,915 | INFO     | exitcode: 0
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | exitmsg: OK
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | cpuconsumptiontime: 255883 s
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | nevents: 1000
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | neventsw: 0
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | pid: 1972058
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | pgrp: 1972058
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | corecount: 9
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | event service: False
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | sizes: {0: 2284263, 4: 2284525, 11: 2284553, 37896: 2327354, 37902: 2336348, 37904: 2336404, 37916: 2336778}
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | --------------------------------------------------
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | 
[2025-11-27 17:31:00] 2025-11-27 20:02:21,916 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 17:31:00] 2025-11-27 20:02:21,938 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,939 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,939 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,939 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,939 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,939 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,939 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,939 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,940 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,940 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,940 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,940 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,940 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:31:00] 2025-11-27 20:02:21,941 | INFO     | job 6897394821 has completed (purged errors)
[2025-11-27 17:31:00] 2025-11-27 20:02:21,941 | INFO     | overall cleanup function is called
[2025-11-27 17:31:00] 2025-11-27 20:02:22,958 | INFO     | --- collectZombieJob: --- 10, [1972058]
[2025-11-27 17:31:00] 2025-11-27 20:02:22,958 | INFO     | zombie collector waiting for pid 1972058
[2025-11-27 17:31:00] 2025-11-27 20:02:22,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:31:00] 2025-11-27 20:02:22,958 | INFO     | collected zombie processes
[2025-11-27 17:31:00] 2025-11-27 20:02:22,958 | INFO     | will attempt to kill all subprocesses of pid=1972058
[2025-11-27 17:31:00] 2025-11-27 20:02:23,514 | INFO     | process IDs to be killed: [1972058] (in reverse order)
[2025-11-27 17:31:00] 2025-11-27 20:02:23,690 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:31:00] 2025-11-27 20:02:23,690 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:31:00] 2025-11-27 20:02:23,770 | INFO     | did not find any defunct processes belonging to 1972058
[2025-11-27 17:31:00] 2025-11-27 20:02:23,798 | INFO     | did not find any defunct processes belonging to 1972058
[2025-11-27 17:31:00] 2025-11-27 20:02:23,799 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:31:00] 2025-11-27 20:02:23,800 | INFO     | ready for new job
[2025-11-27 17:31:00] 2025-11-27 20:02:23,800 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:31:00] 2025-11-27 20:02:23,804 | INFO     | ***************************************
[2025-11-27 17:31:00] 2025-11-27 20:02:23,804 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:31:00] 2025-11-27 20:02:23,804 | INFO     | ***************************************
[2025-11-27 17:31:00] 2025-11-27 20:02:23,804 | INFO     | 
[2025-11-27 17:31:00] 2025-11-27 20:02:23,807 | INFO     | architecture information:
[2025-11-27 17:31:00] 2025-11-27 20:02:23,808 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:31:00] 2025-11-27 20:02:23,829 | INFO     | cat /etc/os-release:
[2025-11-27 17:31:00] NAME="CentOS Linux"
[2025-11-27 17:31:00] VERSION="7 (Core)"
[2025-11-27 17:31:00] ID="centos"
[2025-11-27 17:31:00] ID_LIKE="rhel fedora"
[2025-11-27 17:31:00] VERSION_ID="7"
[2025-11-27 17:31:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:31:00] ANSI_COLOR="0;31"
[2025-11-27 17:31:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:31:00] HOME_URL="https://www.centos.org/"
[2025-11-27 17:31:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:31:00] 
[2025-11-27 17:31:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:31:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:31:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:31:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:31:00] 
[2025-11-27 17:31:00] 2025-11-27 20:02:23,829 | INFO     | ***************************************
[2025-11-27 17:31:00] 2025-11-27 20:02:24,333 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 17:31:00] 2025-11-27 20:02:24,526 | INFO     | sufficient remaining disk space (70245154816 B)
[2025-11-27 17:31:00] 2025-11-27 20:02:24,527 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:31:00] 2025-11-27 20:02:24,527 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:31:00] 2025-11-27 20:02:24,527 | INFO     | update_server=False
[2025-11-27 17:31:00] 2025-11-27 20:02:24,527 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:31:00] 2025-11-27 20:02:24,527 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:31:00] 2025-11-27 20:02:24,795 | INFO     | all data control threads have been joined
[2025-11-27 17:31:00] 2025-11-27 20:02:24,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:31:00] 2025-11-27 20:02:24,813 | INFO     | aborting loop
[2025-11-27 17:31:00] 2025-11-27 20:02:25,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:31:00] 2025-11-27 20:02:25,520 | INFO     | all payload control threads have been joined
[2025-11-27 17:31:00] 2025-11-27 20:02:25,534 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:25,667 | INFO     | all job control threads have been joined
[2025-11-27 17:31:00] 2025-11-27 20:02:25,802 | INFO     | [data] control thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:25,819 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:25,823 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:25,863 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:25,882 | INFO     | [job] validate thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:25,997 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:26,119 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:26,420 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:26,526 | INFO     | [payload] control thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:26,534 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:26,675 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:26,677 | INFO     | [job] control thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:26,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:31:00] 2025-11-27 20:02:26,959 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:27,935 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:29,261 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:31:00] 2025-11-27 20:02:54,855 | INFO     | PID=1945129 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:31:00] 2025-11-27 20:02:54,855 | INFO     | .. there are 39 such processes running
[2025-11-27 17:31:00] 2025-11-27 20:02:54,856 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:31:00] 2025-11-27 20:02:54,857 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:31:00] 2025-11-27 20:02:54,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:31:00] 2025-11-27 20:03:16,456 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:31:00] 2025-11-27 20:03:17,961 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140099722831680)>', '<ExcThread(monitor, started 140099014620928)>']
[2025-11-27 17:31:00] 2025-11-27 20:03:17,998 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:31:00] 2025-11-27 20:03:17,998 | INFO     | [monitor] control thread has ended
[2025-11-27 17:31:00] 2025-11-27 20:03:22,987 | INFO     | all workflow threads have been joined
[2025-11-27 17:31:00] 2025-11-27 20:03:22,987 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:31:00] 2025-11-27 20:03:22,987 | INFO     | traces error code: 0
[2025-11-27 17:31:00] 2025-11-27 20:03:22,988 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:31:00] 2025-11-27 20:03:23,207 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:31:00] 2025-11-27 20:03:23,212 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:31:00] 2025-11-27 20:03:23,222 [wrapper] pilotpid: 1945129
[2025-11-27 17:31:00] 2025-11-27 20:03:23,225 [wrapper] Pilot exit status: 0
[2025-11-27 17:31:00] 2025-11-27 20:03:23,251 [wrapper] pandaids: 6897394821 6897394821
[2025-11-27 17:31:00] 2025-11-27 20:03:23,355 [wrapper] cleanup supervisor_pilot   91746 1945131
[2025-11-27 17:31:00] 2025-11-27 20:03:23,359 [wrapper] Test setup, not cleaning
[2025-11-27 17:31:00] 2025-11-27 20:03:23,361 [wrapper] apfmon messages muted
[2025-11-27 17:31:00] 2025-11-27 20:03:23,364 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:31:00] 2025-11-27 20:03:23,367 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:31:00]  *** Error codes and diagnostics ***
[2025-11-27 17:31:00]     "exeErrorCode": 0,
[2025-11-27 17:31:00]     "exeErrorDiag": "",
[2025-11-27 17:31:00]     "pilotErrorCode": 0,
[2025-11-27 17:31:00]     "pilotErrorDiag": "",
[2025-11-27 17:31:00]  *** Listing of results directory ***
[2025-11-27 17:31:00] total 1730784
[2025-11-27 17:31:00] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 17:31:00] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas       100 Nov 26 18:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:31:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 18:36 run_atlas
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas       105 Nov 26 18:36 job.xml
[2025-11-27 17:31:00] -rw-r--r--. 3 boincer umatlas 409435931 Nov 26 18:36 EVNT.47483658._003104.pool.root.1
[2025-11-27 17:31:00] -rw-r--r--. 3 boincer umatlas 409435931 Nov 26 18:36 ATLAS.root_0
[2025-11-27 17:31:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:36 start_atlas.sh
[2025-11-27 17:31:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 18:36 shared
[2025-11-27 17:31:00] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 18:36 input.tar.gz
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas         0 Nov 26 18:36 boinc_lockfile
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 04:29 pandaJob.out
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas        57 Nov 27 04:30 setup.sh.local
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas    991551 Nov 27 04:30 agis_schedconf.cvmfs.json
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:47 boinc_task_state.xml
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas 935428524 Nov 27 15:01 HITS.47556173._000822.pool.root.1
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas      1070 Nov 27 15:01 memory_monitor_summary.json
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:02 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas   1993797 Nov 27 15:02 log.47556173._000822.job.log.tgz.1
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas      8669 Nov 27 15:02 heartbeat.json
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas        96 Nov 27 15:02 pilot_heartbeat.json
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas      4824 Nov 27 15:03 pilotlog.txt
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas   5056489 Nov 27 15:03 log.47556173._000822.job.log.1
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas       353 Nov 27 15:03 output.list
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:03 runtime_log
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas   7065600 Nov 27 15:03 result.tar.gz
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas      9433 Nov 27 15:03 runtime_log.err
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas       791 Nov 27 15:03 dmeKDm8VBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpSMKDmxur6Nm.diag
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 17:30 init_data.xml
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:30 boinc_mmap_file
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:30 wrapper_checkpoint.txt
[2025-11-27 17:31:00] -rw-r--r--. 1 boincer umatlas     23604 Nov 27 17:31 stderr.txt
[2025-11-27 17:31:00] HITS file was successfully produced:
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas 935428524 Nov 27 15:01 shared/HITS.pool.root.1
[2025-11-27 17:31:00]  *** Contents of shared directory: ***
[2025-11-27 17:31:00] total 1320852
[2025-11-27 17:31:00] -rw-r--r--. 3 boincer umatlas 409435931 Nov 26 18:36 ATLAS.root_0
[2025-11-27 17:31:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:36 start_atlas.sh
[2025-11-27 17:31:00] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 18:36 input.tar.gz
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas 935428524 Nov 27 15:01 HITS.pool.root.1
[2025-11-27 17:31:00] -rw-------. 1 boincer umatlas   7065600 Nov 27 15:03 result.tar.gz
17:31:02 (1928509): run_atlas exited; CPU time 256641.445458
17:31:02 (1928509): called boinc_finish(0)

</stderr_txt>
]]>

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