Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:37:50 (24932): wrapper (7.7.26015): starting
18:37:50 (24932): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 18:37:50] Arguments: --nthreads 12
[2025-11-26 18:37:50] Threads: 12
[2025-11-26 18:37:50] Checking for CVMFS
[2025-11-26 18:37:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:37:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:37:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:37:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:37:51] 2.11.2.0 2933 288351 94476 153340 2 82 20138594 20275201 1 130560 2 129137699 99.962 17234049 14738 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 18:37:51] CVMFS is ok
[2025-11-26 18:37:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:37:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:37:51] Further information can be found at the LHC@home message board.
[2025-11-26 18:37:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:37:51] Checking for apptainer binary...
[2025-11-26 18:37:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:37:51] Running /usr/bin/apptainer --version
[2025-11-26 18:37:51] apptainer version 1.3.2-1.el7
[2025-11-26 18:37:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:37:52] c-205-15.aglt2.org
[2025-11-26 18:37:52] apptainer works
[2025-11-26 18:37:52] Set ATHENA_PROC_NUMBER=12
[2025-11-26 18:37:52] Set ATHENA_CORE_NUMBER=12
[2025-11-26 18:37:52] Starting ATLAS job with PandaID=6897998616
[2025-11-26 18:37:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:42:55]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:42:55] 2025-11-27 06:42:00,862 | INFO     | PID=28679 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 01:42:55] 2025-11-27 06:42:01,541 | INFO     | monitor loop #1895: job 0:6897998616 is in state 'finished'
[2025-11-27 01:42:55] 2025-11-27 06:42:01,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:42:55] 2025-11-27 06:42:01,862 | INFO     | time since job start (25434s) is within the limit (172800.0s)
[2025-11-27 01:42:55] 2025-11-27 06:42:03,431 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 01:42:55] 2025-11-27 06:42:03,435 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-11-27 01:42:55] 2025-11-27 06:42:03,437 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897998616/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:42:55] 2025-11-27 06:42:03,438 | INFO     | extracted standard info from prmon json
[2025-11-27 01:42:55] 2025-11-27 06:42:03,438 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:42:55] 2025-11-27 06:42:03,438 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:42:55] 2025-11-27 06:42:03,445 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:42:55] 2025-11-27 06:42:03,446 | INFO     | sum of square deviations: 22484419395.0504
[2025-11-27 01:42:55] 2025-11-27 06:42:03,449 | INFO     | sum of deviations: 322522843207.5539
[2025-11-27 01:42:55] 2025-11-27 06:42:03,450 | INFO     | mean x: 1764213004.2446043
[2025-11-27 01:42:55] 2025-11-27 06:42:03,450 | INFO     | mean y: 3426956.3573141485
[2025-11-27 01:42:55] 2025-11-27 06:42:03,450 | INFO     | intersect: -25302941162.62407
[2025-11-27 01:42:55] 2025-11-27 06:42:03,450 | INFO     | chi2: 5.884957003960172
[2025-11-27 01:42:55] 2025-11-27 06:42:03,451 | INFO     | sum of square deviations: 21685309939.747402
[2025-11-27 01:42:55] 2025-11-27 06:42:03,455 | INFO     | sum of deviations: 491327617240.039
[2025-11-27 01:42:55] 2025-11-27 06:42:03,455 | INFO     | mean x: 1764212851.747573
[2025-11-27 01:42:55] 2025-11-27 06:42:03,455 | INFO     | mean y: 3459139.7888349514
[2025-11-27 01:42:55] 2025-11-27 06:42:03,455 | INFO     | intersect: -39968600247.963036
[2025-11-27 01:42:55] 2025-11-27 06:42:03,456 | INFO     | chi2: 2.5806752404387567
[2025-11-27 01:42:55] 2025-11-27 06:42:03,456 | INFO     | current chi2=2.5806752404387567 (change=56.147933813243846 %)
[2025-11-27 01:42:55] 2025-11-27 06:42:03,456 | INFO     | sum of square deviations: 20905363634.43726
[2025-11-27 01:42:55] 2025-11-27 06:42:03,460 | INFO     | sum of deviations: 519670703332.42926
[2025-11-27 01:42:55] 2025-11-27 06:42:03,460 | INFO     | mean x: 1764212699.2506142
[2025-11-27 01:42:55] 2025-11-27 06:42:03,460 | INFO     | mean y: 3464642.28009828
[2025-11-27 01:42:55] 2025-11-27 06:42:03,460 | INFO     | intersect: -43851771280.8739
[2025-11-27 01:42:55] 2025-11-27 06:42:03,461 | INFO     | chi2: 2.3037693399869417
[2025-11-27 01:42:55] 2025-11-27 06:42:03,461 | INFO     | current chi2=2.3037693399869417 (change=10.729978577418233 %)
[2025-11-27 01:42:55] 2025-11-27 06:42:03,461 | INFO     | right removable region: 406
[2025-11-27 01:42:55] 2025-11-27 06:42:03,461 | INFO     | sum of square deviations: 21685247719.74741
[2025-11-27 01:42:55] 2025-11-27 06:42:03,465 | INFO     | sum of deviations: 194943715183.17465
[2025-11-27 01:42:55] 2025-11-27 06:42:03,465 | INFO     | mean x: 1764213156.747573
[2025-11-27 01:42:55] 2025-11-27 06:42:03,465 | INFO     | mean y: 3451211.424757282
[2025-11-27 01:42:55] 2025-11-27 06:42:03,465 | INFO     | intersect: -15856283092.565676
[2025-11-27 01:42:55] 2025-11-27 06:42:03,466 | INFO     | chi2: 3.7178325557362846
[2025-11-27 01:42:55] 2025-11-27 06:42:03,466 | INFO     | current chi2=3.7178325557362846 (change=36.824813618273865 %)
[2025-11-27 01:42:55] 2025-11-27 06:42:03,467 | INFO     | sum of square deviations: 20905289457.43008
[2025-11-27 01:42:55] 2025-11-27 06:42:03,470 | INFO     | sum of deviations: 164653403715.02417
[2025-11-27 01:42:55] 2025-11-27 06:42:03,470 | INFO     | mean x: 1764213309.2457004
[2025-11-27 01:42:55] 2025-11-27 06:42:03,470 | INFO     | mean y: 3457127.2997542997
[2025-11-27 01:42:55] 2025-11-27 06:42:03,470 | INFO     | intersect: -13891769094.665253
[2025-11-27 01:42:55] 2025-11-27 06:42:03,471 | INFO     | chi2: 3.6694991446949263
[2025-11-27 01:42:55] 2025-11-27 06:42:03,471 | INFO     | current chi2=3.6694991446949263 (change=1.3000427081306847 %)
[2025-11-27 01:42:55] 2025-11-27 06:42:03,471 | INFO     | left removable region: 20
[2025-11-27 01:42:55] 2025-11-27 06:42:03,472 | INFO     | sum of square deviations: 17833572446.09332
[2025-11-27 01:42:55] 2025-11-27 06:42:03,475 | INFO     | sum of deviations: 322550618978.13464
[2025-11-27 01:42:55] 2025-11-27 06:42:03,475 | INFO     | mean x: 1764213278.7409327
[2025-11-27 01:42:55] 2025-11-27 06:42:03,475 | INFO     | mean y: 3503858.6813471504
[2025-11-27 01:42:55] 2025-11-27 06:42:03,475 | INFO     | intersect: -31905306716.845814
[2025-11-27 01:42:55] 2025-11-27 06:42:03,476 | INFO     | chi2: 0.031566302629663694
[2025-11-27 01:42:55] 2025-11-27 06:42:03,476 | INFO     | current memory leak: 18.09 B/s (using 386 data points, chi2=0.03)
[2025-11-27 01:42:55] 2025-11-27 06:42:03,476 | INFO     | could have reported an average CPU frequency of 2420 MHz (17 samples)
[2025-11-27 01:42:55] 2025-11-27 06:42:03,477 | INFO     | ..............................
[2025-11-27 01:42:55] 2025-11-27 06:42:03,477 | INFO     | . Timing measurements:
[2025-11-27 01:42:55] 2025-11-27 06:42:03,477 | INFO     | . get job = 0 s
[2025-11-27 01:42:55] 2025-11-27 06:42:03,477 | INFO     | . initial setup = 2 s
[2025-11-27 01:42:55] 2025-11-27 06:42:03,477 | INFO     | . payload setup = 7 s
[2025-11-27 01:42:55] 2025-11-27 06:42:03,477 | INFO     | . stage-in = 0 s
[2025-11-27 01:42:55] 2025-11-27 06:42:03,477 | INFO     | . payload execution = 25399 s
[2025-11-27 01:42:55] 2025-11-27 06:42:03,477 | INFO     | . stage-out = 3 s
[2025-11-27 01:42:55] 2025-11-27 06:42:03,477 | INFO     | . log creation = 0 s
[2025-11-27 01:42:55] 2025-11-27 06:42:03,478 | INFO     | ..............................
[2025-11-27 01:42:55] 2025-11-27 06:42:03,697 | INFO     | 
[2025-11-27 01:42:55] 2025-11-27 06:42:03,697 | INFO     | job summary report
[2025-11-27 01:42:55] 2025-11-27 06:42:03,697 | INFO     | --------------------------------------------------
[2025-11-27 01:42:55] 2025-11-27 06:42:03,697 | INFO     | PanDA job id: 6897998616
[2025-11-27 01:42:55] 2025-11-27 06:42:03,697 | INFO     | task id: 47556173
[2025-11-27 01:42:55] 2025-11-27 06:42:03,698 | INFO     | errors: (none)
[2025-11-27 01:42:55] 2025-11-27 06:42:03,698 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:42:55] 2025-11-27 06:42:03,698 | INFO     | pilot state: finished 
[2025-11-27 01:42:55] 2025-11-27 06:42:03,698 | INFO     | transexitcode: 0
[2025-11-27 01:42:55] 2025-11-27 06:42:03,698 | INFO     | exeerrorcode: 0
[2025-11-27 01:42:55] 2025-11-27 06:42:03,698 | INFO     | exeerrordiag: 
[2025-11-27 01:42:55] 2025-11-27 06:42:03,699 | INFO     | exitcode: 0
[2025-11-27 01:42:55] 2025-11-27 06:42:03,699 | INFO     | exitmsg: OK
[2025-11-27 01:42:55] 2025-11-27 06:42:03,699 | INFO     | cpuconsumptiontime: 292281 s
[2025-11-27 01:42:55] 2025-11-27 06:42:03,699 | INFO     | nevents: 1000
[2025-11-27 01:42:55] 2025-11-27 06:42:03,699 | INFO     | neventsw: 0
[2025-11-27 01:42:55] 2025-11-27 06:42:03,699 | INFO     | pid: 2743
[2025-11-27 01:42:55] 2025-11-27 06:42:03,700 | INFO     | pgrp: 2743
[2025-11-27 01:42:55] 2025-11-27 06:42:03,700 | INFO     | corecount: 12
[2025-11-27 01:42:55] 2025-11-27 06:42:03,700 | INFO     | event service: False
[2025-11-27 01:42:55] 2025-11-27 06:42:03,700 | INFO     | sizes: {0: 2284093, 1: 2284292, 5: 2284554, 11: 2284610, 25410: 2321618, 25413: 2330612, 25414: 2330796, 25420: 2331106}
[2025-11-27 01:42:55] 2025-11-27 06:42:03,700 | INFO     | --------------------------------------------------
[2025-11-27 01:42:55] 2025-11-27 06:42:03,700 | INFO     | 
[2025-11-27 01:42:55] 2025-11-27 06:42:03,701 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 01:42:55] 2025-11-27 06:42:03,726 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,726 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,726 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,727 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,727 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,727 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,727 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,727 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,727 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,728 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,728 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,728 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,728 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,728 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,729 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,729 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,729 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,729 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:42:55] 2025-11-27 06:42:03,729 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,729 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:42:55] 2025-11-27 06:42:03,730 | INFO     | job 6897998616 has completed (purged errors)
[2025-11-27 01:42:55] 2025-11-27 06:42:03,730 | INFO     | overall cleanup function is called
[2025-11-27 01:42:55] 2025-11-27 06:42:04,746 | INFO     | --- collectZombieJob: --- 10, [2743]
[2025-11-27 01:42:55] 2025-11-27 06:42:04,746 | INFO     | zombie collector waiting for pid 2743
[2025-11-27 01:42:55] 2025-11-27 06:42:04,746 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:42:55] 2025-11-27 06:42:04,746 | INFO     | collected zombie processes
[2025-11-27 01:42:55] 2025-11-27 06:42:04,746 | INFO     | will attempt to kill all subprocesses of pid=2743
[2025-11-27 01:42:55] 2025-11-27 06:42:04,839 | INFO     | process IDs to be killed: [2743] (in reverse order)
[2025-11-27 01:42:55] 2025-11-27 06:42:04,889 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:42:55] 2025-11-27 06:42:04,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:42:55] 2025-11-27 06:42:04,894 | INFO     | did not find any defunct processes belonging to 2743
[2025-11-27 01:42:55] 2025-11-27 06:42:04,896 | INFO     | did not find any defunct processes belonging to 2743
[2025-11-27 01:42:55] 2025-11-27 06:42:04,899 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:42:55] 2025-11-27 06:42:04,899 | INFO     | ready for new job
[2025-11-27 01:42:55] 2025-11-27 06:42:04,899 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:42:55] 2025-11-27 06:42:04,902 | INFO     | ***************************************
[2025-11-27 01:42:55] 2025-11-27 06:42:04,902 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:42:55] 2025-11-27 06:42:04,902 | INFO     | ***************************************
[2025-11-27 01:42:55] 2025-11-27 06:42:04,902 | INFO     | 
[2025-11-27 01:42:55] 2025-11-27 06:42:04,903 | INFO     | architecture information:
[2025-11-27 01:42:55] 2025-11-27 06:42:04,904 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:42:55] 2025-11-27 06:42:04,919 | INFO     | cat /etc/os-release:
[2025-11-27 01:42:55] NAME="CentOS Linux"
[2025-11-27 01:42:55] VERSION="7 (Core)"
[2025-11-27 01:42:55] ID="centos"
[2025-11-27 01:42:55] ID_LIKE="rhel fedora"
[2025-11-27 01:42:55] VERSION_ID="7"
[2025-11-27 01:42:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:42:55] ANSI_COLOR="0;31"
[2025-11-27 01:42:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:42:55] HOME_URL="https://www.centos.org/"
[2025-11-27 01:42:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:42:55] 
[2025-11-27 01:42:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:42:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:42:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:42:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:42:55] 
[2025-11-27 01:42:55] 2025-11-27 06:42:04,919 | INFO     | ***************************************
[2025-11-27 01:42:55] 2025-11-27 06:42:05,422 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 01:42:55] 2025-11-27 06:42:05,439 | INFO     | sufficient remaining disk space (28245491712 B)
[2025-11-27 01:42:55] 2025-11-27 06:42:05,440 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:42:55] 2025-11-27 06:42:05,440 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:42:55] 2025-11-27 06:42:05,440 | INFO     | update_server=False
[2025-11-27 01:42:55] 2025-11-27 06:42:05,440 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:42:55] 2025-11-27 06:42:05,440 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:42:55] 2025-11-27 06:42:05,441 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:42:55] 2025-11-27 06:42:05,441 | INFO     | aborting loop
[2025-11-27 01:42:55] 2025-11-27 06:42:05,441 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:42:55] 2025-11-27 06:42:05,518 | INFO     | all job control threads have been joined
[2025-11-27 01:42:55] 2025-11-27 06:42:05,596 | INFO     | all payload control threads have been joined
[2025-11-27 01:42:55] 2025-11-27 06:42:05,685 | INFO     | all data control threads have been joined
[2025-11-27 01:42:55] 2025-11-27 06:42:06,446 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:06,446 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:06,447 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:06,523 | INFO     | [job] control thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:06,602 | INFO     | [payload] control thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:06,690 | INFO     | [data] control thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:06,751 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:06,888 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:07,027 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:07,157 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:07,447 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:07,461 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:07,534 | INFO     | [job] validate thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:07,615 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:07,776 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:07,953 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:42:55] 2025-11-27 06:42:11,959 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:42:55] 2025-11-27 06:42:35,069 | INFO     | PID=28679 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 01:42:55] 2025-11-27 06:42:35,069 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:42:55] 2025-11-27 06:42:35,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:42:55] 2025-11-27 06:42:35,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:42:55] 2025-11-27 06:42:49,163 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:42:55] 2025-11-27 06:42:49,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140293849397056)>', '<ExcThread(monitor, started 140293252818688)>']
[2025-11-27 01:42:55] 2025-11-27 06:42:50,145 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:42:55] 2025-11-27 06:42:50,146 | INFO     | [monitor] control thread has ended
[2025-11-27 01:42:55] 2025-11-27 06:42:54,806 | INFO     | all workflow threads have been joined
[2025-11-27 01:42:55] 2025-11-27 06:42:54,806 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:42:55] 2025-11-27 06:42:54,806 | INFO     | traces error code: 0
[2025-11-27 01:42:55] 2025-11-27 06:42:54,807 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:42:55] 2025-11-27 06:42:54,907 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:42:55] 2025-11-27 06:42:54,911 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:42:55] 2025-11-27 06:42:54,915 [wrapper] pilotpid: 28679
[2025-11-27 01:42:55] 2025-11-27 06:42:54,919 [wrapper] Pilot exit status: 0
[2025-11-27 01:42:55] 2025-11-27 06:42:54,932 [wrapper] pandaids: 6897998616
[2025-11-27 01:42:55] 2025-11-27 06:42:54,977 [wrapper] cleanup supervisor_pilot 16695 28680
[2025-11-27 01:42:55] 2025-11-27 06:42:54,981 [wrapper] Test setup, not cleaning
[2025-11-27 01:42:55] 2025-11-27 06:42:54,986 [wrapper] apfmon messages muted
[2025-11-27 01:42:55] 2025-11-27 06:42:54,990 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:42:55] 2025-11-27 06:42:54,994 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:42:55]  *** Error codes and diagnostics ***
[2025-11-27 01:42:55]     "exeErrorCode": 0,
[2025-11-27 01:42:55]     "exeErrorDiag": "",
[2025-11-27 01:42:55]     "pilotErrorCode": 0,
[2025-11-27 01:42:55]     "pilotErrorDiag": "",
[2025-11-27 01:42:55]  *** Listing of results directory ***
[2025-11-27 01:42:55] total 1314548
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 21:21 queuedata.json
[2025-11-27 01:42:55] -rwx------ 1 boincer umatlas     36292 Nov 25 21:23 runpilot2-wrapper.sh
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas       100 Nov 26 18:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:42:55] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 18:37 run_atlas
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas       105 Nov 26 18:37 job.xml
[2025-11-27 01:42:55] -rw-r--r-- 2 boincer umatlas 409041788 Nov 26 18:37 EVNT.47483658._003149.pool.root.1
[2025-11-27 01:42:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 18:37 start_atlas.sh
[2025-11-27 01:42:55] drwxrwx--x 2 boincer umatlas      4096 Nov 26 18:37 shared
[2025-11-27 01:42:55] -rw-r--r-- 2 boincer umatlas    590112 Nov 26 18:37 input.tar.gz
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas         0 Nov 26 18:37 boinc_lockfile
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 18:37 pandaJob.out
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas        57 Nov 26 18:37 setup.sh.local
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas    991538 Nov 26 18:38 agis_schedconf.cvmfs.json
[2025-11-27 01:42:55] drwx------ 5 boincer umatlas      4096 Nov 26 18:38 pilot3
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas       532 Nov 27 01:32 boinc_task_state.xml
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas      5956 Nov 27 01:40 init_data.xml
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas 921725696 Nov 27 01:41 HITS.47556173._001056.pool.root.1
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas      1061 Nov 27 01:41 memory_monitor_summary.json
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas   1516240 Nov 27 01:41 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas   2160654 Nov 27 01:41 log.47556173._001056.job.log.tgz.1
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas      8676 Nov 27 01:42 heartbeat.json
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas        95 Nov 27 01:42 pilot_heartbeat.json
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 01:42 boinc_mmap_file
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas        29 Nov 27 01:42 wrapper_checkpoint.txt
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas      4746 Nov 27 01:42 pilotlog.txt
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas   3545942 Nov 27 01:42 log.47556173._001056.job.log.1
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas       353 Nov 27 01:42 output.list
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas       620 Nov 27 01:42 runtime_log
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas   5724160 Nov 27 01:42 result.tar.gz
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas      9345 Nov 27 01:42 runtime_log.err
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas       670 Nov 27 01:42 HdCNDm6MKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZmJKDmWNCR7n.diag
[2025-11-27 01:42:55] -rw-r--r-- 1 boincer umatlas     21424 Nov 27 01:42 stderr.txt
[2025-11-27 01:42:55] HITS file was successfully produced:
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas 921725696 Nov 27 01:41 shared/HITS.pool.root.1
[2025-11-27 01:42:55]  *** Contents of shared directory: ***
[2025-11-27 01:42:55] total 1305772
[2025-11-27 01:42:55] -rw-r--r-- 2 boincer umatlas 409041788 Nov 26 18:37 ATLAS.root_0
[2025-11-27 01:42:55] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 18:37 start_atlas.sh
[2025-11-27 01:42:55] -rw-r--r-- 2 boincer umatlas    590112 Nov 26 18:37 input.tar.gz
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas 921725696 Nov 27 01:41 HITS.pool.root.1
[2025-11-27 01:42:55] -rw------- 1 boincer umatlas   5724160 Nov 27 01:42 result.tar.gz
01:42:56 (24932): run_atlas exited; CPU time 286138.102952
01:42:56 (24932): called boinc_finish(0)

</stderr_txt>
]]>

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