Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:50 (3781983): wrapper (7.7.26015): starting
00:03:50 (3781983): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:03:50] Arguments: --nthreads 8
[2025-11-27 00:03:50] Threads: 8
[2025-11-27 00:03:50] Checking for CVMFS
[2025-11-27 00:03:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:03:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:03:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:03:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:03:53] 2.13.3.0 11334 31046 351116 153347 3 427 31862039 32935936 38298 16776704 0 142760858 99.522 183213883 40681 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:03:53] CVMFS is ok
[2025-11-27 00:03:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:03:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:03:53] Further information can be found at the LHC@home message board.
[2025-11-27 00:03:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:03:53] Checking for apptainer binary...
[2025-11-27 00:03:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:03:53] Running /usr/bin/apptainer --version
[2025-11-27 00:03:53] apptainer version 1.4.4-1.el9
[2025-11-27 00:03:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:03:54] c6-4-5-2.aglt2.org
[2025-11-27 00:03:54] apptainer works
[2025-11-27 00:03:54] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:03:54] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:03:54] Starting ATLAS job with PandaID=6897394859
[2025-11-27 00:03:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:00:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:00:59] 2025-11-27 15:17:24,749 | INFO     | time since job start (36770s) is within the limit (172800.0s)
[2025-11-27 11:00:59] 2025-11-27 15:17:25,402 | INFO     | monitor loop #2462: job 0:6897394859 is in state 'finished'
[2025-11-27 11:00:59] 2025-11-27 15:17:25,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:00:59] 2025-11-27 15:17:25,928 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 11:00:59] 2025-11-27 15:17:25,937 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3174.952578124999
[2025-11-27 11:00:59] 2025-11-27 15:17:25,946 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6897394859/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:00:59] 2025-11-27 15:17:25,947 | INFO     | extracted standard info from prmon json
[2025-11-27 11:00:59] 2025-11-27 15:17:25,947 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:00:59] 2025-11-27 15:17:25,947 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:00:59] 2025-11-27 15:17:25,955 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:00:59] 2025-11-27 15:17:25,956 | INFO     | sum of square deviations: 67286536647.38425
[2025-11-27 11:00:59] 2025-11-27 15:17:25,962 | INFO     | sum of deviations: 791524613046.2395
[2025-11-27 11:00:59] 2025-11-27 15:17:25,962 | INFO     | mean x: 1764238279.4309485
[2025-11-27 11:00:59] 2025-11-27 15:17:25,962 | INFO     | mean y: 2858587.9334442597
[2025-11-27 11:00:59] 2025-11-27 15:17:25,962 | INFO     | intersect: -20750743707.96108
[2025-11-27 11:00:59] 2025-11-27 15:17:25,963 | INFO     | chi2: 7.2979750248067266
[2025-11-27 11:00:59] 2025-11-27 15:17:25,963 | INFO     | sum of square deviations: 65620885867.589005
[2025-11-27 11:00:59] 2025-11-27 15:17:25,970 | INFO     | sum of deviations: 969867894710.3029
[2025-11-27 11:00:59] 2025-11-27 15:17:25,970 | INFO     | mean x: 1764238126.9513423
[2025-11-27 11:00:59] 2025-11-27 15:17:25,970 | INFO     | mean y: 2874908.182885906
[2025-11-27 11:00:59] 2025-11-27 15:17:25,970 | INFO     | intersect: -26072328060.07009
[2025-11-27 11:00:59] 2025-11-27 15:17:25,971 | INFO     | chi2: 4.686714614184045
[2025-11-27 11:00:59] 2025-11-27 15:17:25,971 | INFO     | current chi2=4.686714614184045 (change=35.780615879702 %)
[2025-11-27 11:00:59] 2025-11-27 15:17:25,972 | INFO     | sum of square deviations: 63982847481.10659
[2025-11-27 11:00:59] 2025-11-27 15:17:25,978 | INFO     | sum of deviations: 978969977628.1543
[2025-11-27 11:00:59] 2025-11-27 15:17:25,978 | INFO     | mean x: 1764237974.467005
[2025-11-27 11:00:59] 2025-11-27 15:17:25,978 | INFO     | mean y: 2875743.23857868
[2025-11-27 11:00:59] 2025-11-27 15:17:25,978 | INFO     | intersect: -26990858958.936214
[2025-11-27 11:00:59] 2025-11-27 15:17:25,979 | INFO     | chi2: 4.565785200554684
[2025-11-27 11:00:59] 2025-11-27 15:17:25,979 | INFO     | current chi2=4.565785200554684 (change=2.5802598106438155 %)
[2025-11-27 11:00:59] 2025-11-27 15:17:25,979 | INFO     | right removable region: 590
[2025-11-27 11:00:59] 2025-11-27 15:17:25,979 | INFO     | sum of square deviations: 65619994657.58905
[2025-11-27 11:00:59] 2025-11-27 15:17:25,985 | INFO     | sum of deviations: 564734090061.8075
[2025-11-27 11:00:59] 2025-11-27 15:17:25,986 | INFO     | mean x: 1764238431.9513423
[2025-11-27 11:00:59] 2025-11-27 15:17:25,986 | INFO     | mean y: 2879336.303691275
[2025-11-27 11:00:59] 2025-11-27 15:17:25,986 | INFO     | intersect: -15180382880.0227
[2025-11-27 11:00:59] 2025-11-27 15:17:25,987 | INFO     | chi2: 3.55372035787009
[2025-11-27 11:00:59] 2025-11-27 15:17:25,987 | INFO     | current chi2=3.55372035787009 (change=51.30539162177793 %)
[2025-11-27 11:00:59] 2025-11-27 15:17:25,988 | INFO     | sum of square deviations: 63981246593.170654
[2025-11-27 11:00:59] 2025-11-27 15:17:25,994 | INFO     | sum of deviations: 478086199004.8664
[2025-11-27 11:00:59] 2025-11-27 15:17:25,995 | INFO     | mean x: 1764238584.468697
[2025-11-27 11:00:59] 2025-11-27 15:17:25,995 | INFO     | mean y: 2887382.72250423
[2025-11-27 11:00:59] 2025-11-27 15:17:25,995 | INFO     | intersect: -13180008604.74636
[2025-11-27 11:00:59] 2025-11-27 15:17:25,995 | INFO     | chi2: 2.9684582733334848
[2025-11-27 11:00:59] 2025-11-27 15:17:25,995 | INFO     | current chi2=2.9684582733334848 (change=16.468996589460975 %)
[2025-11-27 11:00:59] 2025-11-27 15:17:25,996 | INFO     | left removable region: 20
[2025-11-27 11:00:59] 2025-11-27 15:17:25,996 | INFO     | sum of square deviations: 57398402959.93689
[2025-11-27 11:00:59] 2025-11-27 15:17:26,001 | INFO     | sum of deviations: 592369034508.1372
[2025-11-27 11:00:59] 2025-11-27 15:17:26,001 | INFO     | mean x: 1764238554.0105264
[2025-11-27 11:00:59] 2025-11-27 15:17:26,001 | INFO     | mean y: 2912334.143859649
[2025-11-27 11:00:59] 2025-11-27 15:17:26,001 | INFO     | intersect: -18204567926.42534
[2025-11-27 11:00:59] 2025-11-27 15:17:26,002 | INFO     | chi2: 0.111494303911273
[2025-11-27 11:00:59] 2025-11-27 15:17:26,002 | INFO     | current memory leak: 10.32 B/s (using 570 data points, chi2=0.11)
[2025-11-27 11:00:59] 2025-11-27 15:17:26,003 | INFO     | could have reported an average CPU frequency of 3134 MHz (24 samples)
[2025-11-27 11:00:59] 2025-11-27 15:17:26,003 | INFO     | ..............................
[2025-11-27 11:00:59] 2025-11-27 15:17:26,003 | INFO     | . Timing measurements:
[2025-11-27 11:00:59] 2025-11-27 15:17:26,003 | INFO     | . get job = 0 s
[2025-11-27 11:00:59] 2025-11-27 15:17:26,003 | INFO     | . initial setup = 3 s
[2025-11-27 11:00:59] 2025-11-27 15:17:26,003 | INFO     | . payload setup = 29 s
[2025-11-27 11:00:59] 2025-11-27 15:17:26,003 | INFO     | . stage-in = 0 s
[2025-11-27 11:00:59] 2025-11-27 15:17:26,003 | INFO     | . payload execution = 36684 s
[2025-11-27 11:00:59] 2025-11-27 15:17:26,003 | INFO     | . stage-out = 4 s
[2025-11-27 11:00:59] 2025-11-27 15:17:26,003 | INFO     | . log creation = 1 s
[2025-11-27 11:00:59] 2025-11-27 15:17:26,004 | INFO     | ..............................
[2025-11-27 11:00:59] 2025-11-27 15:17:26,085 | INFO     | 
[2025-11-27 11:00:59] 2025-11-27 15:17:26,085 | INFO     | job summary report
[2025-11-27 11:00:59] 2025-11-27 15:17:26,085 | INFO     | --------------------------------------------------
[2025-11-27 11:00:59] 2025-11-27 15:17:26,085 | INFO     | PanDA job id: 6897394859
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | task id: 47556161
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | errors: (none)
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | pilot state: finished 
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | transexitcode: 0
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | exeerrorcode: 0
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | exeerrordiag: 
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | exitcode: 0
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | exitmsg: OK
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | cpuconsumptiontime: 221892 s
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | nevents: 1000
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | neventsw: 0
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | pid: 3804691
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | pgrp: 3804691
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | corecount: 8
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | event service: False
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | sizes: {0: 2283437, 1: 2284122, 2: 2284321, 13: 2284321, 19: 2284639, 24: 2284667, 36714: 2327680, 36719: 2336674, 36720: 2336730, 36728: 2336976}
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | --------------------------------------------------
[2025-11-27 11:00:59] 2025-11-27 15:17:26,086 | INFO     | 
[2025-11-27 11:00:59] 2025-11-27 15:17:26,087 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 11:00:59] 2025-11-27 15:17:26,106 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,108 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,108 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,108 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:00:59] 2025-11-27 15:17:26,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,108 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:00:59] 2025-11-27 15:17:26,108 | INFO     | job 6897394859 has completed (purged errors)
[2025-11-27 11:00:59] 2025-11-27 15:17:26,108 | INFO     | overall cleanup function is called
[2025-11-27 11:00:59] 2025-11-27 15:17:27,122 | INFO     | --- collectZombieJob: --- 10, [3804691]
[2025-11-27 11:00:59] 2025-11-27 15:17:27,122 | INFO     | zombie collector waiting for pid 3804691
[2025-11-27 11:00:59] 2025-11-27 15:17:27,122 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:00:59] 2025-11-27 15:17:27,122 | INFO     | collected zombie processes
[2025-11-27 11:00:59] 2025-11-27 15:17:27,122 | INFO     | will attempt to kill all subprocesses of pid=3804691
[2025-11-27 11:00:59] 2025-11-27 15:17:27,690 | INFO     | process IDs to be killed: [3804691] (in reverse order)
[2025-11-27 11:00:59] 2025-11-27 15:17:27,862 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:00:59] 2025-11-27 15:17:27,862 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:00:59] 2025-11-27 15:17:27,880 | INFO     | did not find any defunct processes belonging to 3804691
[2025-11-27 11:00:59] 2025-11-27 15:17:27,896 | INFO     | did not find any defunct processes belonging to 3804691
[2025-11-27 11:00:59] 2025-11-27 15:17:27,897 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:00:59] 2025-11-27 15:17:27,897 | INFO     | ready for new job
[2025-11-27 11:00:59] 2025-11-27 15:17:27,898 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:00:59] 2025-11-27 15:17:27,900 | INFO     | ***************************************
[2025-11-27 11:00:59] 2025-11-27 15:17:27,901 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:00:59] 2025-11-27 15:17:27,901 | INFO     | ***************************************
[2025-11-27 11:00:59] 2025-11-27 15:17:27,901 | INFO     | 
[2025-11-27 11:00:59] 2025-11-27 15:17:27,904 | INFO     | architecture information:
[2025-11-27 11:00:59] 2025-11-27 15:17:27,904 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:00:59] 2025-11-27 15:17:27,944 | INFO     | cat /etc/os-release:
[2025-11-27 11:00:59] NAME="CentOS Linux"
[2025-11-27 11:00:59] VERSION="7 (Core)"
[2025-11-27 11:00:59] ID="centos"
[2025-11-27 11:00:59] ID_LIKE="rhel fedora"
[2025-11-27 11:00:59] VERSION_ID="7"
[2025-11-27 11:00:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:00:59] ANSI_COLOR="0;31"
[2025-11-27 11:00:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:00:59] HOME_URL="https://www.centos.org/"
[2025-11-27 11:00:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:00:59] 
[2025-11-27 11:00:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:00:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:00:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:00:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:00:59] 
[2025-11-27 11:00:59] 2025-11-27 15:17:27,944 | INFO     | ***************************************
[2025-11-27 11:00:59] 2025-11-27 15:17:28,447 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 11:00:59] 2025-11-27 15:17:28,484 | INFO     | sufficient remaining disk space (69385322496 B)
[2025-11-27 11:00:59] 2025-11-27 15:17:28,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:00:59] 2025-11-27 15:17:28,484 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:00:59] 2025-11-27 15:17:28,484 | INFO     | update_server=False
[2025-11-27 11:00:59] 2025-11-27 15:17:28,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:00:59] 2025-11-27 15:17:28,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:00:59] 2025-11-27 15:17:28,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:00:59] 2025-11-27 15:17:28,940 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:00:59] 2025-11-27 15:17:28,940 | INFO     | aborting loop
[2025-11-27 11:00:59] 2025-11-27 15:17:29,492 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:29,510 | INFO     | all data control threads have been joined
[2025-11-27 11:00:59] 2025-11-27 15:17:29,530 | INFO     | all job control threads have been joined
[2025-11-27 11:00:59] 2025-11-27 15:17:29,618 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:29,783 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:29,799 | INFO     | all payload control threads have been joined
[2025-11-27 11:00:59] 2025-11-27 15:17:29,948 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:30,276 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:30,307 | INFO     | [job] validate thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:30,358 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:30,358 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:30,427 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:30,436 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:30,493 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:30,516 | INFO     | [data] control thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:30,537 | INFO     | [job] control thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:30,804 | INFO     | [payload] control thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:31,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:00:59] 2025-11-27 15:17:32,107 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:32,498 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:00:59] 2025-11-27 15:17:38,067 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:00:59] 2025-11-27 15:17:38,212 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140543061714752)>', '<ExcThread(monitor, started 140542126057216)>']
[2025-11-27 11:00:59] 2025-11-27 15:17:43,237 | INFO     | all workflow threads have been joined
[2025-11-27 11:00:59] 2025-11-27 15:17:43,238 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:00:59] 2025-11-27 15:17:43,238 | INFO     | traces error code: 0
[2025-11-27 11:00:59] 2025-11-27 15:17:43,238 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:00:59] 2025-11-27 15:17:58,464 | INFO     | PID=3785733 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:00:59] 2025-11-27 15:17:58,465 | INFO     | .. there are 55 such processes running
[2025-11-27 11:00:59] 2025-11-27 15:17:58,465 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:00:59] 2025-11-27 15:17:58,466 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:00:59] 2025-11-27 15:17:58,466 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:00:59] 2025-11-27 15:17:58,466 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:00:59] 2025-11-27 15:17:58,466 | INFO     | [monitor] control thread has ended
[2025-11-27 11:00:59] 2025-11-27 15:17:58,649 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:00:59] 2025-11-27 15:17:58,656 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:00:59] 2025-11-27 15:17:58,669 [wrapper] pilotpid: 3785733
[2025-11-27 11:00:59] 2025-11-27 15:17:58,678 [wrapper] Pilot exit status: 0
[2025-11-27 11:00:59] 2025-11-27 15:17:58,705 [wrapper] pandaids: 6897394859
[2025-11-27 11:00:59] 2025-11-27 15:17:58,802 [wrapper] cleanup supervisor_pilot 2705701 3785734
[2025-11-27 11:00:59] 2025-11-27 15:17:58,809 [wrapper] Test setup, not cleaning
[2025-11-27 11:00:59] 2025-11-27 15:17:58,820 [wrapper] apfmon messages muted
[2025-11-27 11:00:59] 2025-11-27 15:17:58,837 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:00:59] 2025-11-27 15:17:58,840 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:00:59]  *** Error codes and diagnostics ***
[2025-11-27 11:00:59]     "exeErrorCode": 0,
[2025-11-27 11:00:59]     "exeErrorDiag": "",
[2025-11-27 11:00:59]     "pilotErrorCode": 0,
[2025-11-27 11:00:59]     "pilotErrorDiag": "",
[2025-11-27 11:00:59]  *** Listing of results directory ***
[2025-11-27 11:00:59] total 1325920
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 11:00:59] -rwx------. 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:00:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:03 run_atlas
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:03 job.xml
[2025-11-27 11:00:59] -rw-r--r--. 2 boincer umatlas 409386098 Nov 27 00:03 EVNT.47483658._002238.pool.root.1
[2025-11-27 11:00:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 11:00:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:03 shared
[2025-11-27 11:00:59] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:03 input.tar.gz
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:03 boinc_lockfile
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 00:03 pandaJob.out
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas        57 Nov 27 00:03 setup.sh.local
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas    991570 Nov 27 00:04 agis_schedconf.cvmfs.json
[2025-11-27 11:00:59] drwx------. 5 boincer umatlas      4096 Nov 27 00:04 pilot3
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:09 boinc_task_state.xml
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas 930694759 Nov 27 10:16 HITS.47556161._002218.pool.root.1
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas      1058 Nov 27 10:17 memory_monitor_summary.json
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:17 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas   1875163 Nov 27 10:17 log.47556161._002218.job.log.tgz.1
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas      8618 Nov 27 10:17 heartbeat.json
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas        95 Nov 27 10:17 pilot_heartbeat.json
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas       823 Nov 27 10:17 pilotlog.txt
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas   4996785 Nov 27 10:17 log.47556161._002218.job.log.1
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas       353 Nov 27 10:17 output.list
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:17 runtime_log
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas   6891520 Nov 27 10:17 result.tar.gz
[2025-11-27 11:00:59] -rw-------. 1 boincer umatlas       660 Nov 27 10:17 SOHODmtVBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnVJKDmTOejum.diag
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 10:17 runtime_log.err
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas      6876 Nov 27 11:00 init_data.xml
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:00 boinc_mmap_file
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:00 wrapper_checkpoint.txt
[2025-11-27 11:00:59] -rw-r--r--. 1 boincer umatlas     21354 Nov 27 11:00 stderr.txt
[2025-11-27 11:01:00] HITS file was successfully produced:
[2025-11-27 11:01:00] -rw-------. 1 boincer umatlas 930694759 Nov 27 10:16 shared/HITS.pool.root.1
[2025-11-27 11:01:00]  *** Contents of shared directory: ***
[2025-11-27 11:01:00] total 1316012
[2025-11-27 11:01:00] -rw-r--r--. 2 boincer umatlas 409386098 Nov 27 00:03 ATLAS.root_0
[2025-11-27 11:01:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 11:01:00] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 00:03 input.tar.gz
[2025-11-27 11:01:00] -rw-------. 1 boincer umatlas 930694759 Nov 27 10:16 HITS.pool.root.1
[2025-11-27 11:01:00] -rw-------. 1 boincer umatlas   6891520 Nov 27 10:17 result.tar.gz
11:01:01 (3781983): run_atlas exited; CPU time 222867.204895
11:01:01 (3781983): called boinc_finish(0)

</stderr_txt>
]]>

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