Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:26:09 (453625): wrapper (7.7.26015): starting
18:26:09 (453625): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:26:09] Arguments: --nthreads 8
[2025-11-26 18:26:09] Threads: 8
[2025-11-26 18:26:09] Checking for CVMFS
[2025-11-26 18:26:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:26:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:26:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:26:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:26:11] 2.13.2.0 7884 37307 209712 153340 2 450 24045769 40960001 27419 16776704 0 385572650 99.728 275314608 47222 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 18:26:11] CVMFS is ok
[2025-11-26 18:26:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:26:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:26:11] Further information can be found at the LHC@home message board.
[2025-11-26 18:26:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:26:11] Checking for apptainer binary...
[2025-11-26 18:26:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:26:11] Running /usr/bin/apptainer --version
[2025-11-26 18:26:11] apptainer version 1.4.4-1.el9
[2025-11-26 18:26:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:26:12] c-208-38.aglt2.org
[2025-11-26 18:26:12] apptainer works
[2025-11-26 18:26:12] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:26:12] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:26:12] Starting ATLAS job with PandaID=6897999057
[2025-11-26 18:26:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:50:55]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:50:55] 2025-11-27 14:49:56,965 | INFO     | monitor loop #3385: job 0:6897999057 is in state 'finished'
[2025-11-27 09:50:55] 2025-11-27 14:49:56,965 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:50:55] 2025-11-27 14:49:57,406 | INFO     | time since job start (55367s) is within the limit (172800.0s)
[2025-11-27 09:50:55] 2025-11-27 14:49:59,413 | INFO     | time since job start (55369s) is within the limit (172800.0s)
[2025-11-27 09:50:55] 2025-11-27 14:49:59,470 | INFO     | monitor loop #3386: job 0:6897999057 is in state 'finished'
[2025-11-27 09:50:55] 2025-11-27 14:49:59,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:50:55] 2025-11-27 14:50:01,693 | INFO     | PID=459522 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 09:50:55] 2025-11-27 14:50:01,693 | INFO     | .. there are 28 such processes running
[2025-11-27 09:50:55] 2025-11-27 14:50:02,007 | INFO     | monitor loop #3387: job 0:6897999057 is in state 'finished'
[2025-11-27 09:50:55] 2025-11-27 14:50:02,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:50:55] 2025-11-27 14:50:02,694 | INFO     | time since job start (55372s) is within the limit (172800.0s)
[2025-11-27 09:50:55] 2025-11-27 14:50:04,519 | INFO     | monitor loop #3388: job 0:6897999057 is in state 'finished'
[2025-11-27 09:50:55] 2025-11-27 14:50:04,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:50:55] 2025-11-27 14:50:04,714 | INFO     | time since job start (55374s) is within the limit (172800.0s)
[2025-11-27 09:50:55] 2025-11-27 14:50:06,721 | INFO     | time since job start (55376s) is within the limit (172800.0s)
[2025-11-27 09:50:55] 2025-11-27 14:50:07,024 | INFO     | monitor loop #3389: job 0:6897999057 is in state 'finished'
[2025-11-27 09:50:55] 2025-11-27 14:50:07,024 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 09:50:55] 2025-11-27 14:50:08,108 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 09:50:55] 2025-11-27 14:50:08,118 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3730.561281250001
[2025-11-27 09:50:55] 2025-11-27 14:50:08,142 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6897999057/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:50:55] 2025-11-27 14:50:08,148 | INFO     | extracted standard info from prmon json
[2025-11-27 09:50:55] 2025-11-27 14:50:08,148 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:50:55] 2025-11-27 14:50:08,148 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:50:55] 2025-11-27 14:50:08,189 | INFO     | fitting pss+swap vs Time
[2025-11-27 09:50:55] 2025-11-27 14:50:08,189 | INFO     | sum of square deviations: 229851728485.13385
[2025-11-27 09:50:55] 2025-11-27 14:50:08,199 | INFO     | sum of deviations: 3018324109184.6
[2025-11-27 09:50:55] 2025-11-27 14:50:08,199 | INFO     | mean x: 1764227336.0309393
[2025-11-27 09:50:55] 2025-11-27 14:50:08,199 | INFO     | mean y: 2918957.8
[2025-11-27 09:50:55] 2025-11-27 14:50:08,199 | INFO     | intersect: -23164232916.670727
[2025-11-27 09:50:55] 2025-11-27 14:50:08,200 | INFO     | chi2: 19.410888860991047
[2025-11-27 09:50:55] 2025-11-27 14:50:08,202 | INFO     | sum of square deviations: 226064360708.44104
[2025-11-27 09:50:55] 2025-11-27 14:50:08,211 | INFO     | sum of deviations: 3322641647201.215
[2025-11-27 09:50:55] 2025-11-27 14:50:08,212 | INFO     | mean x: 1764227183.5533333
[2025-11-27 09:50:55] 2025-11-27 14:50:08,212 | INFO     | mean y: 2931210.4955555554
[2025-11-27 09:50:55] 2025-11-27 14:50:08,212 | INFO     | intersect: -25927271572.591473
[2025-11-27 09:50:55] 2025-11-27 14:50:08,212 | INFO     | chi2: 16.410038252507555
[2025-11-27 09:50:55] 2025-11-27 14:50:08,212 | INFO     | current chi2=16.410038252507555 (change=15.459624904216163 %)
[2025-11-27 09:50:55] 2025-11-27 14:50:08,212 | INFO     | right removable region: 899
[2025-11-27 09:50:55] 2025-11-27 14:50:08,213 | INFO     | sum of square deviations: 226062135428.44095
[2025-11-27 09:50:55] 2025-11-27 14:50:08,222 | INFO     | sum of deviations: 2635153702408.0273
[2025-11-27 09:50:55] 2025-11-27 14:50:08,222 | INFO     | mean x: 1764227488.5533333
[2025-11-27 09:50:55] 2025-11-27 14:50:08,222 | INFO     | mean y: 2934378.238888889
[2025-11-27 09:50:55] 2025-11-27 14:50:08,222 | INFO     | intersect: -20562254876.212605
[2025-11-27 09:50:55] 2025-11-27 14:50:08,223 | INFO     | chi2: 14.63905183192603
[2025-11-27 09:50:55] 2025-11-27 14:50:08,223 | INFO     | current chi2=14.63905183192603 (change=24.58329993663868 %)
[2025-11-27 09:50:55] 2025-11-27 14:50:08,223 | INFO     | left removable region: 10
[2025-11-27 09:50:55] 2025-11-27 14:50:08,224 | INFO     | sum of square deviations: 217874725188.47934
[2025-11-27 09:50:55] 2025-11-27 14:50:08,233 | INFO     | sum of deviations: 2654217771942.064
[2025-11-27 09:50:55] 2025-11-27 14:50:08,233 | INFO     | mean x: 1764227458.103487
[2025-11-27 09:50:55] 2025-11-27 14:50:08,233 | INFO     | mean y: 2964180.140607424
[2025-11-27 09:50:55] 2025-11-27 14:50:08,233 | INFO     | intersect: -21489404285.249683
[2025-11-27 09:50:55] 2025-11-27 14:50:08,233 | INFO     | chi2: 6.893020868299238
[2025-11-27 09:50:55] 2025-11-27 14:50:08,234 | INFO     | current memory leak: 12.18 B/s (using 889 data points, chi2=6.89)
[2025-11-27 09:50:55] 2025-11-27 14:50:08,234 | INFO     | could have reported an average CPU frequency of 3734 MHz (34 samples)
[2025-11-27 09:50:55] 2025-11-27 14:50:08,235 | INFO     | ..............................
[2025-11-27 09:50:55] 2025-11-27 14:50:08,235 | INFO     | . Timing measurements:
[2025-11-27 09:50:55] 2025-11-27 14:50:08,235 | INFO     | . get job = 0 s
[2025-11-27 09:50:55] 2025-11-27 14:50:08,235 | INFO     | . initial setup = 4 s
[2025-11-27 09:50:55] 2025-11-27 14:50:08,235 | INFO     | . payload setup = 38 s
[2025-11-27 09:50:55] 2025-11-27 14:50:08,235 | INFO     | . stage-in = 0 s
[2025-11-27 09:50:55] 2025-11-27 14:50:08,235 | INFO     | . payload execution = 55220 s
[2025-11-27 09:50:55] 2025-11-27 14:50:08,235 | INFO     | . stage-out = 4 s
[2025-11-27 09:50:55] 2025-11-27 14:50:08,235 | INFO     | . log creation = 1 s
[2025-11-27 09:50:55] 2025-11-27 14:50:08,235 | INFO     | ..............................
[2025-11-27 09:50:55] 2025-11-27 14:50:08,282 | INFO     | 
[2025-11-27 09:50:55] 2025-11-27 14:50:08,282 | INFO     | job summary report
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | --------------------------------------------------
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | PanDA job id: 6897999057
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | task id: 47556161
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | errors: (none)
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | pilot state: finished 
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | transexitcode: 0
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | exeerrorcode: 0
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | exeerrordiag: 
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | exitcode: 0
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | exitmsg: OK
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | cpuconsumptiontime: 146339 s
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | nevents: 1000
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | neventsw: 0
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | pid: 485029
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | pgrp: 485029
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | corecount: 8
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | event service: False
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | sizes: {0: 2284264, 1: 2284264, 11: 2284292, 22: 2284320, 26: 2284610, 33: 2284638, 55263: 2335944, 55268: 2344938, 55271: 2344994, 55317: 2345240}
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | --------------------------------------------------
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | 
[2025-11-27 09:50:55] 2025-11-27 14:50:08,283 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 09:50:55] 2025-11-27 14:50:08,474 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,478 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,479 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,481 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,487 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,488 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,488 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,488 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,488 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,489 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,489 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,489 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:50:55] 2025-11-27 14:50:08,489 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,489 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:50:55] 2025-11-27 14:50:08,491 | INFO     | job 6897999057 has completed (purged errors)
[2025-11-27 09:50:55] 2025-11-27 14:50:08,491 | INFO     | overall cleanup function is called
[2025-11-27 09:50:55] 2025-11-27 14:50:09,510 | INFO     | --- collectZombieJob: --- 10, [485029]
[2025-11-27 09:50:55] 2025-11-27 14:50:09,510 | INFO     | zombie collector waiting for pid 485029
[2025-11-27 09:50:55] 2025-11-27 14:50:09,511 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:50:55] 2025-11-27 14:50:09,511 | INFO     | collected zombie processes
[2025-11-27 09:50:55] 2025-11-27 14:50:09,511 | INFO     | will attempt to kill all subprocesses of pid=485029
[2025-11-27 09:50:55] 2025-11-27 14:50:10,894 | INFO     | process IDs to be killed: [485029] (in reverse order)
[2025-11-27 09:50:55] 2025-11-27 14:50:11,941 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:50:55] 2025-11-27 14:50:11,941 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:50:55] 2025-11-27 14:50:12,045 | INFO     | did not find any defunct processes belonging to 485029
[2025-11-27 09:50:55] 2025-11-27 14:50:12,157 | INFO     | did not find any defunct processes belonging to 485029
[2025-11-27 09:50:55] 2025-11-27 14:50:12,202 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:50:55] 2025-11-27 14:50:12,203 | INFO     | ready for new job
[2025-11-27 09:50:55] 2025-11-27 14:50:12,203 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:50:55] 2025-11-27 14:50:12,205 | INFO     | ***************************************
[2025-11-27 09:50:55] 2025-11-27 14:50:12,205 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:50:55] 2025-11-27 14:50:12,205 | INFO     | ***************************************
[2025-11-27 09:50:55] 2025-11-27 14:50:12,205 | INFO     | 
[2025-11-27 09:50:55] 2025-11-27 14:50:12,246 | INFO     | architecture information:
[2025-11-27 09:50:55] 2025-11-27 14:50:12,250 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:50:55] 2025-11-27 14:50:12,376 | INFO     | cat /etc/os-release:
[2025-11-27 09:50:55] NAME="CentOS Linux"
[2025-11-27 09:50:55] VERSION="7 (Core)"
[2025-11-27 09:50:55] ID="centos"
[2025-11-27 09:50:55] ID_LIKE="rhel fedora"
[2025-11-27 09:50:55] VERSION_ID="7"
[2025-11-27 09:50:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:50:55] ANSI_COLOR="0;31"
[2025-11-27 09:50:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:50:55] HOME_URL="https://www.centos.org/"
[2025-11-27 09:50:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:50:55] 
[2025-11-27 09:50:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:50:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:50:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:50:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:50:55] 
[2025-11-27 09:50:55] 2025-11-27 14:50:12,376 | INFO     | ***************************************
[2025-11-27 09:50:55] 2025-11-27 14:50:12,880 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 09:50:55] 2025-11-27 14:50:13,025 | INFO     | sufficient remaining disk space (165061591040 B)
[2025-11-27 09:50:55] 2025-11-27 14:50:13,025 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:50:55] 2025-11-27 14:50:13,025 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:50:55] 2025-11-27 14:50:13,025 | INFO     | update_server=False
[2025-11-27 09:50:55] 2025-11-27 14:50:13,025 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:50:55] 2025-11-27 14:50:13,025 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:50:55] 2025-11-27 14:50:13,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:50:55] 2025-11-27 14:50:13,084 | INFO     | aborting loop
[2025-11-27 09:50:55] 2025-11-27 14:50:13,185 | INFO     | all data control threads have been joined
[2025-11-27 09:50:55] 2025-11-27 14:50:13,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:50:55] 2025-11-27 14:50:13,340 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:50:55] 2025-11-27 14:50:13,683 | INFO     | all payload control threads have been joined
[2025-11-27 09:50:55] 2025-11-27 14:50:13,994 | INFO     | all job control threads have been joined
[2025-11-27 09:50:55] 2025-11-27 14:50:14,036 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:14,089 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:14,202 | INFO     | [data] control thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:14,280 | INFO     | [job] validate thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:14,290 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:14,357 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:14,429 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:14,625 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:14,689 | INFO     | [payload] control thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:14,856 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:14,999 | INFO     | [job] control thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:15,041 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:15,255 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:15,264 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:15,516 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:17,243 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:50:55] 2025-11-27 14:50:41,913 | INFO     | PID=459522 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 09:50:55] 2025-11-27 14:50:41,913 | INFO     | .. there are 27 such processes running
[2025-11-27 09:50:55] 2025-11-27 14:50:41,914 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:50:55] 2025-11-27 14:50:41,914 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:50:55] 2025-11-27 14:50:41,945 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:50:55] 2025-11-27 14:50:46,884 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:50:55] 2025-11-27 14:50:47,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140473748166464)>', '<ExcThread(monitor, started 140473272362752)>']
[2025-11-27 09:50:55] 2025-11-27 14:50:47,996 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:50:55] 2025-11-27 14:50:47,996 | INFO     | [monitor] control thread has ended
[2025-11-27 09:50:55] 2025-11-27 14:50:52,521 | INFO     | all workflow threads have been joined
[2025-11-27 09:50:55] 2025-11-27 14:50:52,521 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:50:55] 2025-11-27 14:50:52,522 | INFO     | traces error code: 0
[2025-11-27 09:50:55] 2025-11-27 14:50:52,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:50:55] 2025-11-27 14:50:52,972 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:50:55] 2025-11-27 14:50:52,984 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:50:55] 2025-11-27 14:50:53,007 [wrapper] pilotpid: 459522
[2025-11-27 09:50:55] 2025-11-27 14:50:53,175 [wrapper] Pilot exit status: 0
[2025-11-27 09:50:55] 2025-11-27 14:50:53,328 [wrapper] pandaids: 6897999057
[2025-11-27 09:50:55] 2025-11-27 14:50:53,846 [wrapper] cleanup supervisor_pilot  314469 459523
[2025-11-27 09:50:55] 2025-11-27 14:50:53,897 [wrapper] Test setup, not cleaning
[2025-11-27 09:50:55] 2025-11-27 14:50:53,947 [wrapper] apfmon messages muted
[2025-11-27 09:50:55] 2025-11-27 14:50:53,989 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:50:55] 2025-11-27 14:50:54,032 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:50:55]  *** Error codes and diagnostics ***
[2025-11-27 09:50:55]     "exeErrorCode": 0,
[2025-11-27 09:50:55]     "exeErrorDiag": "",
[2025-11-27 09:50:55]     "pilotErrorCode": 0,
[2025-11-27 09:50:55]     "pilotErrorDiag": "",
[2025-11-27 09:50:55]  *** Listing of results directory ***
[2025-11-27 09:50:55] total 1331336
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 09:50:55] -rwx------. 1 boincer umatlas     36292 Nov 25 21:35 runpilot2-wrapper.sh
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:35 queuedata.json
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas       100 Nov 26 18:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:50:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 18:26 run_atlas
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas       105 Nov 26 18:26 job.xml
[2025-11-27 09:50:55] -rw-r--r--. 2 boincer umatlas 413158160 Nov 26 18:26 EVNT.47483658._002383.pool.root.1
[2025-11-27 09:50:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:26 start_atlas.sh
[2025-11-27 09:50:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 18:26 shared
[2025-11-27 09:50:55] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 18:26 input.tar.gz
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas         0 Nov 26 18:26 boinc_lockfile
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 18:26 pandaJob.out
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas        57 Nov 26 18:26 setup.sh.local
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas    991538 Nov 26 18:27 agis_schedconf.cvmfs.json
[2025-11-27 09:50:55] drwx------. 5 boincer umatlas      4096 Nov 26 18:27 pilot3
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas       533 Nov 27 09:37 boinc_task_state.xml
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas 927916069 Nov 27 09:48 HITS.47556161._003656.pool.root.1
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas      1079 Nov 27 09:49 memory_monitor_summary.json
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas   1516240 Nov 27 09:49 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas   2057585 Nov 27 09:49 log.47556161._003656.job.log.tgz.1
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 09:49 init_data.xml
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas      8641 Nov 27 09:50 heartbeat.json
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas        95 Nov 27 09:50 pilot_heartbeat.json
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas        29 Nov 27 09:50 wrapper_checkpoint.txt
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 09:50 boinc_mmap_file
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas      4824 Nov 27 09:50 pilotlog.txt
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas   7083363 Nov 27 09:50 log.47556161._003656.job.log.1
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas       353 Nov 27 09:50 output.list
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas       620 Nov 27 09:50 runtime_log
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas   9164800 Nov 27 09:50 result.tar.gz
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 09:50 runtime_log.err
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas       666 Nov 27 09:50 LV6MDmwYKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpmJKDmr5GpAo.diag
[2025-11-27 09:50:55] -rw-r--r--. 1 boincer umatlas     21861 Nov 27 09:50 stderr.txt
[2025-11-27 09:50:55] HITS file was successfully produced:
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas 927916069 Nov 27 09:48 shared/HITS.pool.root.1
[2025-11-27 09:50:55]  *** Contents of shared directory: ***
[2025-11-27 09:50:55] total 1319204
[2025-11-27 09:50:55] -rw-r--r--. 2 boincer umatlas 413158160 Nov 26 18:26 ATLAS.root_0
[2025-11-27 09:50:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:26 start_atlas.sh
[2025-11-27 09:50:55] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 18:26 input.tar.gz
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas 927916069 Nov 27 09:48 HITS.pool.root.1
[2025-11-27 09:50:55] -rw-------. 1 boincer umatlas   9164800 Nov 27 09:50 result.tar.gz
09:50:57 (453625): run_atlas exited; CPU time 147225.264345
09:50:57 (453625): called boinc_finish(0)

</stderr_txt>
]]>

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