Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:32 (1608444): wrapper (7.7.26015): starting
00:01:32 (1608444): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:01:32] Arguments: --nthreads 9
[2025-11-27 00:01:32] Threads: 9
[2025-11-27 00:01:32] Checking for CVMFS
[2025-11-27 00:01:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:35] 2.13.3.0 10982 31044 358336 153347 0 626 30811535 40960001 31124 16776704 0 155004953 99.694 122827005 39044 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:01:35] CVMFS is ok
[2025-11-27 00:01:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:35] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:35] Checking for apptainer binary...
[2025-11-27 00:01:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:35] Running /usr/bin/apptainer --version
[2025-11-27 00:01:35] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:36] c6-8-12-3.aglt2.org
[2025-11-27 00:01:36] apptainer works
[2025-11-27 00:01:36] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:01:36] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:01:36] Starting ATLAS job with PandaID=6897998886
[2025-11-27 00:01:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:16:04]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:16:04] 2025-11-28 01:15:13,698 | INFO     | time since job start (72763s) is within the limit (172800.0s)
[2025-11-27 20:16:04] 2025-11-28 01:15:15,348 | INFO     | monitor loop #4313: job 0:6897998886 is in state 'finished'
[2025-11-27 20:16:04] 2025-11-28 01:15:15,348 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:16:04] 2025-11-28 01:15:15,770 | INFO     | time since job start (72765s) is within the limit (172800.0s)
[2025-11-27 20:16:04] 2025-11-28 01:15:17,779 | INFO     | time since job start (72767s) is within the limit (172800.0s)
[2025-11-27 20:16:04] 2025-11-28 01:15:17,853 | INFO     | monitor loop #4314: job 0:6897998886 is in state 'finished'
[2025-11-27 20:16:04] 2025-11-28 01:15:17,854 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:16:04] 2025-11-28 01:15:19,786 | INFO     | time since job start (72769s) is within the limit (172800.0s)
[2025-11-27 20:16:04] 2025-11-28 01:15:20,359 | INFO     | monitor loop #4315: job 0:6897998886 is in state 'finished'
[2025-11-27 20:16:04] 2025-11-28 01:15:20,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:16:04] 2025-11-28 01:15:21,812 | INFO     | time since job start (72771s) is within the limit (172800.0s)
[2025-11-27 20:16:04] 2025-11-28 01:15:22,864 | INFO     | monitor loop #4316: job 0:6897998886 is in state 'finished'
[2025-11-27 20:16:04] 2025-11-28 01:15:22,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:16:04] 2025-11-28 01:15:23,820 | INFO     | time since job start (72773s) is within the limit (172800.0s)
[2025-11-27 20:16:04] 2025-11-28 01:15:25,369 | INFO     | monitor loop #4317: job 0:6897998886 is in state 'finished'
[2025-11-27 20:16:04] 2025-11-28 01:15:25,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:16:04] 2025-11-28 01:15:25,829 | INFO     | time since job start (72775s) is within the limit (172800.0s)
[2025-11-27 20:16:04] 2025-11-28 01:15:26,564 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 20:16:04] 2025-11-28 01:15:26,574 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2963.5335000000014
[2025-11-27 20:16:04] 2025-11-28 01:15:26,592 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897998886/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:16:04] 2025-11-28 01:15:26,597 | INFO     | extracted standard info from prmon json
[2025-11-27 20:16:04] 2025-11-28 01:15:26,597 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:16:04] 2025-11-28 01:15:26,597 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:16:04] 2025-11-28 01:15:26,636 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:16:04] 2025-11-28 01:15:26,639 | INFO     | sum of square deviations: 523848040857.98706
[2025-11-27 20:16:04] 2025-11-28 01:15:26,706 | INFO     | sum of deviations: 1861994876470.4827
[2025-11-27 20:16:04] 2025-11-28 01:15:26,706 | INFO     | mean x: 1764256167.3366919
[2025-11-27 20:16:04] 2025-11-28 01:15:26,706 | INFO     | mean y: 3053490.046179681
[2025-11-27 20:16:04] 2025-11-28 01:15:26,706 | INFO     | intersect: -6267917646.892614
[2025-11-27 20:16:04] 2025-11-28 01:15:26,709 | INFO     | chi2: 24.312284979543275
[2025-11-27 20:16:04] 2025-11-28 01:15:26,735 | INFO     | sum of square deviations: 517278477641.515
[2025-11-27 20:16:04] 2025-11-28 01:15:26,791 | INFO     | sum of deviations: 2318337865264.7197
[2025-11-27 20:16:04] 2025-11-28 01:15:26,791 | INFO     | mean x: 1764256014.842327
[2025-11-27 20:16:04] 2025-11-28 01:15:26,791 | INFO     | mean y: 3064080.244519393
[2025-11-27 20:16:04] 2025-11-28 01:15:26,791 | INFO     | intersect: -7903975744.568292
[2025-11-27 20:16:04] 2025-11-28 01:15:26,797 | INFO     | chi2: 20.4009640104994
[2025-11-27 20:16:04] 2025-11-28 01:15:26,797 | INFO     | current chi2=20.4009640104994 (change=16.087837783799092 %)
[2025-11-27 20:16:04] 2025-11-28 01:15:26,797 | INFO     | right removable region: 1185
[2025-11-27 20:16:04] 2025-11-28 01:15:26,799 | INFO     | sum of square deviations: 517277506521.51434
[2025-11-27 20:16:04] 2025-11-28 01:15:26,859 | INFO     | sum of deviations: 1377013114542.1396
[2025-11-27 20:16:04] 2025-11-28 01:15:26,859 | INFO     | mean x: 1764256319.842327
[2025-11-27 20:16:04] 2025-11-28 01:15:26,859 | INFO     | mean y: 3064744.674536256
[2025-11-27 20:16:04] 2025-11-28 01:15:26,860 | INFO     | intersect: -4693455129.490325
[2025-11-27 20:16:04] 2025-11-28 01:15:26,865 | INFO     | chi2: 20.652823297044826
[2025-11-27 20:16:04] 2025-11-28 01:15:26,865 | INFO     | current chi2=20.652823297044826 (change=15.05190353591847 %)
[2025-11-27 20:16:04] 2025-11-28 01:15:26,866 | INFO     | left removable region: 10
[2025-11-27 20:16:04] 2025-11-28 01:15:26,867 | INFO     | sum of square deviations: 503017489138.4258
[2025-11-27 20:16:04] 2025-11-28 01:15:26,914 | INFO     | sum of deviations: 1654322189420.2896
[2025-11-27 20:16:04] 2025-11-28 01:15:26,914 | INFO     | mean x: 1764256289.3531914
[2025-11-27 20:16:04] 2025-11-28 01:15:26,915 | INFO     | mean y: 3083550.0161702125
[2025-11-27 20:16:04] 2025-11-28 01:15:26,915 | INFO     | intersect: -5799196470.705141
[2025-11-27 20:16:04] 2025-11-28 01:15:26,920 | INFO     | chi2: 14.916722177999747
[2025-11-27 20:16:04] 2025-11-28 01:15:26,921 | INFO     | current memory leak: 3.29 B/s (using 1175 data points, chi2=14.92)
[2025-11-27 20:16:04] 2025-11-28 01:15:26,927 | INFO     | could have reported an average CPU frequency of 3001 MHz (43 samples)
[2025-11-27 20:16:04] 2025-11-28 01:15:26,927 | INFO     | ..............................
[2025-11-27 20:16:04] 2025-11-28 01:15:26,928 | INFO     | . Timing measurements:
[2025-11-27 20:16:04] 2025-11-28 01:15:26,928 | INFO     | . get job = 0 s
[2025-11-27 20:16:04] 2025-11-28 01:15:26,928 | INFO     | . initial setup = 4 s
[2025-11-27 20:16:04] 2025-11-28 01:15:26,928 | INFO     | . payload setup = 36 s
[2025-11-27 20:16:04] 2025-11-28 01:15:26,928 | INFO     | . stage-in = 0 s
[2025-11-27 20:16:04] 2025-11-28 01:15:26,928 | INFO     | . payload execution = 72631 s
[2025-11-27 20:16:04] 2025-11-28 01:15:26,928 | INFO     | . stage-out = 10 s
[2025-11-27 20:16:04] 2025-11-28 01:15:26,928 | INFO     | . log creation = 2 s
[2025-11-27 20:16:04] 2025-11-28 01:15:26,928 | INFO     | ..............................
[2025-11-27 20:16:04] 2025-11-28 01:15:27,376 | INFO     | 
[2025-11-27 20:16:04] 2025-11-28 01:15:27,377 | INFO     | job summary report
[2025-11-27 20:16:04] 2025-11-28 01:15:27,377 | INFO     | --------------------------------------------------
[2025-11-27 20:16:04] 2025-11-28 01:15:27,378 | INFO     | PanDA job id: 6897998886
[2025-11-27 20:16:04] 2025-11-28 01:15:27,416 | INFO     | task id: 47556173
[2025-11-27 20:16:04] 2025-11-28 01:15:27,416 | INFO     | errors: (none)
[2025-11-27 20:16:04] 2025-11-28 01:15:27,416 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:16:04] 2025-11-28 01:15:27,417 | INFO     | pilot state: finished 
[2025-11-27 20:16:04] 2025-11-28 01:15:27,417 | INFO     | transexitcode: 0
[2025-11-27 20:16:04] 2025-11-28 01:15:27,417 | INFO     | exeerrorcode: 0
[2025-11-27 20:16:04] 2025-11-28 01:15:27,417 | INFO     | exeerrordiag: 
[2025-11-27 20:16:04] 2025-11-28 01:15:27,417 | INFO     | exitcode: 0
[2025-11-27 20:16:04] 2025-11-28 01:15:27,417 | INFO     | exitmsg: OK
[2025-11-27 20:16:04] 2025-11-28 01:15:27,417 | INFO     | cpuconsumptiontime: 250589 s
[2025-11-27 20:16:04] 2025-11-28 01:15:27,418 | INFO     | nevents: 1000
[2025-11-27 20:16:04] 2025-11-28 01:15:27,418 | INFO     | neventsw: 0
[2025-11-27 20:16:04] 2025-11-28 01:15:27,418 | INFO     | pid: 1626330
[2025-11-27 20:16:04] 2025-11-28 01:15:27,418 | INFO     | pgrp: 1626330
[2025-11-27 20:16:04] 2025-11-28 01:15:27,418 | INFO     | corecount: 9
[2025-11-27 20:16:04] 2025-11-28 01:15:27,418 | INFO     | event service: False
[2025-11-27 20:16:04] 2025-11-28 01:15:27,418 | INFO     | sizes: {0: 2283436, 1: 2284292, 2: 2284292, 12: 2284320, 23: 2284348, 27: 2284638, 34: 2284794, 72672: 2343177, 72673: 2343176, 72684: 2352254, 72686: 2352310, 727
[2025-11-27 20:16:04] 2025-11-28 01:15:27,419 | INFO     | --------------------------------------------------
[2025-11-27 20:16:04] 2025-11-28 01:15:27,419 | INFO     | 
[2025-11-27 20:16:04] 2025-11-28 01:15:27,419 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 20:16:04] 2025-11-28 01:15:27,508 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,509 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,509 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,509 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,509 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,509 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,509 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,509 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,509 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,509 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,509 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,509 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,510 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,510 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,510 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,510 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,510 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,510 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:16:04] 2025-11-28 01:15:27,510 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,510 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:16:04] 2025-11-28 01:15:27,510 | INFO     | job 6897998886 has completed (purged errors)
[2025-11-27 20:16:04] 2025-11-28 01:15:27,510 | INFO     | overall cleanup function is called
[2025-11-27 20:16:04] 2025-11-28 01:15:28,540 | INFO     | --- collectZombieJob: --- 10, [1626330]
[2025-11-27 20:16:04] 2025-11-28 01:15:28,540 | INFO     | zombie collector waiting for pid 1626330
[2025-11-27 20:16:04] 2025-11-28 01:15:28,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:16:04] 2025-11-28 01:15:28,540 | INFO     | collected zombie processes
[2025-11-27 20:16:04] 2025-11-28 01:15:28,540 | INFO     | will attempt to kill all subprocesses of pid=1626330
[2025-11-27 20:16:04] 2025-11-28 01:15:30,451 | INFO     | process IDs to be killed: [1626330] (in reverse order)
[2025-11-27 20:16:04] 2025-11-28 01:15:30,757 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:16:04] 2025-11-28 01:15:30,758 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:16:04] 2025-11-28 01:15:30,791 | INFO     | did not find any defunct processes belonging to 1626330
[2025-11-27 20:16:04] 2025-11-28 01:15:30,824 | INFO     | did not find any defunct processes belonging to 1626330
[2025-11-27 20:16:04] 2025-11-28 01:15:30,830 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:16:04] 2025-11-28 01:15:30,830 | INFO     | ready for new job
[2025-11-27 20:16:04] 2025-11-28 01:15:30,830 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:16:04] 2025-11-28 01:15:30,839 | INFO     | ***************************************
[2025-11-27 20:16:04] 2025-11-28 01:15:30,840 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:16:04] 2025-11-28 01:15:30,840 | INFO     | ***************************************
[2025-11-27 20:16:04] 2025-11-28 01:15:30,840 | INFO     | 
[2025-11-27 20:16:04] 2025-11-28 01:15:30,847 | INFO     | architecture information:
[2025-11-27 20:16:04] 2025-11-28 01:15:30,855 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:16:04] 2025-11-28 01:15:30,917 | INFO     | cat /etc/os-release:
[2025-11-27 20:16:04] NAME="CentOS Linux"
[2025-11-27 20:16:04] VERSION="7 (Core)"
[2025-11-27 20:16:04] ID="centos"
[2025-11-27 20:16:04] ID_LIKE="rhel fedora"
[2025-11-27 20:16:04] VERSION_ID="7"
[2025-11-27 20:16:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:16:04] ANSI_COLOR="0;31"
[2025-11-27 20:16:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:16:04] HOME_URL="https://www.centos.org/"
[2025-11-27 20:16:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:16:04] 
[2025-11-27 20:16:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:16:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:16:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:16:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:16:04] 
[2025-11-27 20:16:04] 2025-11-28 01:15:30,917 | INFO     | ***************************************
[2025-11-27 20:16:04] 2025-11-28 01:15:31,419 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 20:16:04] 2025-11-28 01:15:31,479 | INFO     | sufficient remaining disk space (51835305984 B)
[2025-11-27 20:16:04] 2025-11-28 01:15:31,480 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:16:04] 2025-11-28 01:15:31,480 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:16:04] 2025-11-28 01:15:31,480 | INFO     | update_server=False
[2025-11-27 20:16:04] 2025-11-28 01:15:31,480 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:16:04] 2025-11-28 01:15:31,573 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:16:04] 2025-11-28 01:15:31,573 | INFO     | aborting loop
[2025-11-27 20:16:04] 2025-11-28 01:15:32,059 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:16:04] 2025-11-28 01:15:32,151 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:16:04] 2025-11-28 01:15:32,389 | INFO     | all data control threads have been joined
[2025-11-27 20:16:04] 2025-11-28 01:15:32,486 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:32,558 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:32,579 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:32,710 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:32,778 | INFO     | all job control threads have been joined
[2025-11-27 20:16:04] 2025-11-28 01:15:32,789 | INFO     | all payload control threads have been joined
[2025-11-27 20:16:04] 2025-11-28 01:15:32,868 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:33,041 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:16:04] 2025-11-28 01:15:33,082 | INFO     | [job] validate thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:33,092 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:33,099 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:33,159 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:33,397 | INFO     | [data] control thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:33,787 | INFO     | [job] control thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:33,795 | INFO     | [payload] control thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:33,921 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:33,929 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:34,087 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:37,050 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:16:04] 2025-11-28 01:15:39,034 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:16:04] 2025-11-28 01:15:40,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140498545547072)>', '<ExcThread(monitor, started 140497976817408)>']
[2025-11-27 20:16:04] 2025-11-28 01:15:45,280 | INFO     | all workflow threads have been joined
[2025-11-27 20:16:04] 2025-11-28 01:15:45,280 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:16:04] 2025-11-28 01:15:45,280 | INFO     | traces error code: 0
[2025-11-27 20:16:04] 2025-11-28 01:15:45,281 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:16:04] 2025-11-28 01:16:02,047 | INFO     | PID=1613739 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:16:04] 2025-11-28 01:16:02,048 | INFO     | .. there are 38 such processes running
[2025-11-27 20:16:04] 2025-11-28 01:16:02,053 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:16:04] 2025-11-28 01:16:02,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:16:04] 2025-11-28 01:16:02,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:16:04] 2025-11-28 01:16:02,053 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:16:04] 2025-11-28 01:16:02,053 | INFO     | [monitor] control thread has ended
[2025-11-27 20:16:04] 2025-11-28 01:16:02,867 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:16:04] 2025-11-28 01:16:02,882 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:16:04] 2025-11-28 01:16:02,922 [wrapper] pilotpid: 1613739
[2025-11-27 20:16:04] 2025-11-28 01:16:02,950 [wrapper] Pilot exit status: 0
[2025-11-27 20:16:04] 2025-11-28 01:16:03,090 [wrapper] pandaids: 6897998886
[2025-11-27 20:16:04] 2025-11-28 01:16:03,534 [wrapper] cleanup supervisor_pilot 1184139 1613740
[2025-11-27 20:16:04] 2025-11-28 01:16:03,551 [wrapper] Test setup, not cleaning
[2025-11-27 20:16:04] 2025-11-28 01:16:03,579 [wrapper] apfmon messages muted
[2025-11-27 20:16:04] 2025-11-28 01:16:03,600 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:16:04] 2025-11-28 01:16:03,621 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:16:04]  *** Error codes and diagnostics ***
[2025-11-27 20:16:04]     "exeErrorCode": 0,
[2025-11-27 20:16:04]     "exeErrorDiag": "",
[2025-11-27 20:16:04]     "pilotErrorCode": 0,
[2025-11-27 20:16:04]     "pilotErrorDiag": "",
[2025-11-27 20:16:04]  *** Listing of results directory ***
[2025-11-27 20:16:04] total 1324280
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 20:16:04] -rwx------. 1 boincer umatlas     36292 Nov 25 21:35 runpilot2-wrapper.sh
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:35 queuedata.json
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:16:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:01 run_atlas
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:01 job.xml
[2025-11-27 20:16:04] -rw-r--r--. 2 boincer umatlas 407791342 Nov 27 00:01 EVNT.47483658._003151.pool.root.1
[2025-11-27 20:16:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 20:16:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:01 shared
[2025-11-27 20:16:04] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 00:01 input.tar.gz
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:01 boinc_lockfile
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:01 pandaJob.out
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas    991570 Nov 27 00:02 agis_schedconf.cvmfs.json
[2025-11-27 20:16:04] drwx------. 5 boincer umatlas      4096 Nov 27 00:02 pilot3
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas       533 Nov 27 19:34 boinc_task_state.xml
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 20:11 init_data.xml
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas 921285801 Nov 27 20:12 HITS.47556173._001077.pool.root.1
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas      1058 Nov 27 20:14 memory_monitor_summary.json
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:14 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas   2405982 Nov 27 20:14 log.47556173._001077.job.log.tgz.1
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas      8627 Nov 27 20:15 heartbeat.json
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:16 boinc_mmap_file
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:16 wrapper_checkpoint.txt
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas        95 Nov 27 20:16 pilot_heartbeat.json
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas       823 Nov 27 20:16 pilotlog.txt
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas   9126237 Nov 27 20:16 log.47556173._001077.job.log.1
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas       353 Nov 27 20:16 output.list
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:16 runtime_log
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas  11550720 Nov 27 20:16 result.tar.gz
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 20:16 runtime_log.err
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas       661 Nov 27 20:16 PntMDmwYKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmckMKDmeKn9Ko.diag
[2025-11-27 20:16:04] -rw-r--r--. 1 boincer umatlas     21819 Nov 27 20:16 stderr.txt
[2025-11-27 20:16:04] HITS file was successfully produced:
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas 921285801 Nov 27 20:12 shared/HITS.pool.root.1
[2025-11-27 20:16:04]  *** Contents of shared directory: ***
[2025-11-27 20:16:04] total 1309816
[2025-11-27 20:16:04] -rw-r--r--. 2 boincer umatlas 407791342 Nov 27 00:01 ATLAS.root_0
[2025-11-27 20:16:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:01 start_atlas.sh
[2025-11-27 20:16:04] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 00:01 input.tar.gz
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas 921285801 Nov 27 20:12 HITS.pool.root.1
[2025-11-27 20:16:04] -rw-------. 1 boincer umatlas  11550720 Nov 27 20:16 result.tar.gz
20:16:05 (1608444): run_atlas exited; CPU time 252739.514451
20:16:05 (1608444): called boinc_finish(0)

</stderr_txt>
]]>

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