Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:26:57 (27598): wrapper (7.7.26015): starting
18:26:57 (27598): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:26:57] Arguments: --nthreads 8
[2025-11-26 18:26:57] Threads: 8
[2025-11-26 18:26:57] Checking for CVMFS
[2025-11-26 18:26:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:26:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:26:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:26:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:26:57] 2.11.2.0 2781 72268 83344 153340 0 81 18843888 20275201 1 130560 0 20754198 99.875 4045876 33436 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 18:26:57] CVMFS is ok
[2025-11-26 18:26:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:26:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:26:57] Further information can be found at the LHC@home message board.
[2025-11-26 18:26:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:26:57] Checking for apptainer binary...
[2025-11-26 18:26:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:26:57] Running /usr/bin/apptainer --version
[2025-11-26 18:26:58] apptainer version 1.3.2-1.el7
[2025-11-26 18:26:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:26:59] c-115-16.aglt2.org
[2025-11-26 18:26:59] apptainer works
[2025-11-26 18:26:59] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:26:59] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:26:59] Starting ATLAS job with PandaID=6897998869
[2025-11-26 18:26:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:46:07 (13217): wrapper (7.7.26015): starting
03:46:07 (13217): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 03:46:07] Arguments: --nthreads 8
[2025-11-27 03:46:07] Threads: 8
[2025-11-27 03:46:07] This job has been restarted, cleaning up previous attempt
[2025-11-27 03:46:07] Checking for CVMFS
[2025-11-27 03:46:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 03:46:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 03:46:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 03:46:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 03:46:07] 2.11.2.0 2781 72827 84212 153357 2 1 19618261 20275201 1 130560 0 20947400 99.875 4070688 33469 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 03:46:07] CVMFS is ok
[2025-11-27 03:46:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 03:46:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 03:46:07] Further information can be found at the LHC@home message board.
[2025-11-27 03:46:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 03:46:07] Checking for apptainer binary...
[2025-11-27 03:46:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 03:46:07] Running /usr/bin/apptainer --version
[2025-11-27 03:46:07] apptainer version 1.3.2-1.el7
[2025-11-27 03:46:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 03:46:09] c-115-16.aglt2.org
[2025-11-27 03:46:09] apptainer works
[2025-11-27 03:46:09] Set ATHENA_PROC_NUMBER=8
[2025-11-27 03:46:09] Set ATHENA_CORE_NUMBER=8
[2025-11-27 03:46:09] Starting ATLAS job with PandaID=6897998869
[2025-11-27 03:46:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:55:46]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:55:46] 2025-11-27 19:55:12,486 | INFO     | monitor loop #2950: job 0:6897998869 is in state 'finished'
[2025-11-27 14:55:46] 2025-11-27 19:55:12,487 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:55:46] 2025-11-27 19:55:12,969 | INFO     | time since job start (40126s) is within the limit (172800.0s)
[2025-11-27 14:55:46] 2025-11-27 19:55:14,309 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 14:55:46] 2025-11-27 19:55:14,312 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1828.875
[2025-11-27 14:55:46] 2025-11-27 19:55:14,315 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897998869/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:55:46] 2025-11-27 19:55:14,316 | INFO     | extracted standard info from prmon json
[2025-11-27 14:55:46] 2025-11-27 19:55:14,316 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:55:46] 2025-11-27 19:55:14,316 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:55:46] 2025-11-27 19:55:14,331 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:55:46] 2025-11-27 19:55:14,332 | INFO     | sum of square deviations: 88339683144.10481
[2025-11-27 14:55:46] 2025-11-27 19:55:14,342 | INFO     | sum of deviations: 636094082200.8998
[2025-11-27 14:55:46] 2025-11-27 19:55:14,342 | INFO     | mean x: 1764253256.150456
[2025-11-27 14:55:46] 2025-11-27 19:55:14,342 | INFO     | mean y: 3132026.3343465044
[2025-11-27 14:55:46] 2025-11-27 19:55:14,342 | INFO     | intersect: -12700457298.41255
[2025-11-27 14:55:46] 2025-11-27 19:55:14,343 | INFO     | chi2: 5.795639034238001
[2025-11-27 14:55:46] 2025-11-27 19:55:14,344 | INFO     | sum of square deviations: 86341255279.47307
[2025-11-27 14:55:46] 2025-11-27 19:55:14,355 | INFO     | sum of deviations: 869197463573.2461
[2025-11-27 14:55:46] 2025-11-27 19:55:14,355 | INFO     | mean x: 1764253103.6554365
[2025-11-27 14:55:46] 2025-11-27 19:55:14,355 | INFO     | mean y: 3149802.169984686
[2025-11-27 14:55:46] 2025-11-27 19:55:14,355 | INFO     | intersect: -17757587146.05813
[2025-11-27 14:55:46] 2025-11-27 19:55:14,356 | INFO     | chi2: 2.758428028143705
[2025-11-27 14:55:46] 2025-11-27 19:55:14,356 | INFO     | current chi2=2.758428028143705 (change=52.40510991370984 %)
[2025-11-27 14:55:46] 2025-11-27 19:55:14,357 | INFO     | sum of square deviations: 84373200077.30876
[2025-11-27 14:55:46] 2025-11-27 19:55:14,369 | INFO     | sum of deviations: 913826779788.2095
[2025-11-27 14:55:46] 2025-11-27 19:55:14,369 | INFO     | mean x: 1764252951.1604939
[2025-11-27 14:55:46] 2025-11-27 19:55:14,369 | INFO     | mean y: 3153247.7191358022
[2025-11-27 14:55:46] 2025-11-27 19:55:14,369 | INFO     | intersect: -19105065850.449554
[2025-11-27 14:55:46] 2025-11-27 19:55:14,370 | INFO     | chi2: 2.5115361240775735
[2025-11-27 14:55:46] 2025-11-27 19:55:14,370 | INFO     | current chi2=2.5115361240775735 (change=8.950456620478816 %)
[2025-11-27 14:55:46] 2025-11-27 19:55:14,370 | INFO     | right removable region: 647
[2025-11-27 14:55:46] 2025-11-27 19:55:14,371 | INFO     | sum of square deviations: 86340994199.47318
[2025-11-27 14:55:46] 2025-11-27 19:55:14,382 | INFO     | sum of deviations: 435942645861.6561
[2025-11-27 14:55:46] 2025-11-27 19:55:14,382 | INFO     | mean x: 1764253408.6554365
[2025-11-27 14:55:46] 2025-11-27 19:55:14,382 | INFO     | mean y: 3147268.9984686063
[2025-11-27 14:55:46] 2025-11-27 19:55:14,382 | INFO     | intersect: -8904710534.478035
[2025-11-27 14:55:46] 2025-11-27 19:55:14,383 | INFO     | chi2: 3.4122277891785986
[2025-11-27 14:55:46] 2025-11-27 19:55:14,383 | INFO     | current chi2=3.4122277891785986 (change=41.12421824373968 %)
[2025-11-27 14:55:46] 2025-11-27 19:55:14,384 | INFO     | sum of square deviations: 84372757949.94452
[2025-11-27 14:55:46] 2025-11-27 19:55:14,395 | INFO     | sum of deviations: 399397988170.9156
[2025-11-27 14:55:46] 2025-11-27 19:55:14,395 | INFO     | mean x: 1764253561.1574075
[2025-11-27 14:55:46] 2025-11-27 19:55:14,395 | INFO     | mean y: 3150098.5694444445
[2025-11-27 14:55:46] 2025-11-27 19:55:14,395 | INFO     | intersect: -8348352685.868162
[2025-11-27 14:55:46] 2025-11-27 19:55:14,396 | INFO     | chi2: 3.37950126786816
[2025-11-27 14:55:46] 2025-11-27 19:55:14,396 | INFO     | current chi2=3.37950126786816 (change=0.9590954453341655 %)
[2025-11-27 14:55:46] 2025-11-27 19:55:14,396 | INFO     | left removable region: 20
[2025-11-27 14:55:46] 2025-11-27 19:55:14,397 | INFO     | sum of square deviations: 76433058821.33322
[2025-11-27 14:55:46] 2025-11-27 19:55:14,406 | INFO     | sum of deviations: 630345855792.6674
[2025-11-27 14:55:46] 2025-11-27 19:55:14,406 | INFO     | mean x: 1764253530.6666667
[2025-11-27 14:55:46] 2025-11-27 19:55:14,406 | INFO     | mean y: 3175342.529505582
[2025-11-27 14:55:46] 2025-11-27 19:55:14,406 | INFO     | intersect: -14546679377.047932
[2025-11-27 14:55:46] 2025-11-27 19:55:14,407 | INFO     | chi2: 0.05785754272004757
[2025-11-27 14:55:46] 2025-11-27 19:55:14,407 | INFO     | current memory leak: 8.25 B/s (using 627 data points, chi2=0.06)
[2025-11-27 14:55:46] 2025-11-27 19:55:14,408 | INFO     | could have reported an average CPU frequency of 2378 MHz (25 samples)
[2025-11-27 14:55:46] 2025-11-27 19:55:14,408 | INFO     | ..............................
[2025-11-27 14:55:46] 2025-11-27 19:55:14,408 | INFO     | . Timing measurements:
[2025-11-27 14:55:46] 2025-11-27 19:55:14,408 | INFO     | . get job = 0 s
[2025-11-27 14:55:46] 2025-11-27 19:55:14,408 | INFO     | . initial setup = 2 s
[2025-11-27 14:55:46] 2025-11-27 19:55:14,408 | INFO     | . payload setup = 8 s
[2025-11-27 14:55:46] 2025-11-27 19:55:14,409 | INFO     | . stage-in = 0 s
[2025-11-27 14:55:46] 2025-11-27 19:55:14,409 | INFO     | . payload execution = 40087 s
[2025-11-27 14:55:46] 2025-11-27 19:55:14,409 | INFO     | . stage-out = 3 s
[2025-11-27 14:55:46] 2025-11-27 19:55:14,409 | INFO     | . log creation = 0 s
[2025-11-27 14:55:46] 2025-11-27 19:55:14,409 | INFO     | ..............................
[2025-11-27 14:55:46] 2025-11-27 19:55:14,499 | INFO     | 
[2025-11-27 14:55:46] 2025-11-27 19:55:14,499 | INFO     | job summary report
[2025-11-27 14:55:46] 2025-11-27 19:55:14,499 | INFO     | --------------------------------------------------
[2025-11-27 14:55:46] 2025-11-27 19:55:14,499 | INFO     | PanDA job id: 6897998869
[2025-11-27 14:55:46] 2025-11-27 19:55:14,499 | INFO     | task id: 47556161
[2025-11-27 14:55:46] 2025-11-27 19:55:14,500 | INFO     | errors: (none)
[2025-11-27 14:55:46] 2025-11-27 19:55:14,500 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:55:46] 2025-11-27 19:55:14,500 | INFO     | pilot state: finished 
[2025-11-27 14:55:46] 2025-11-27 19:55:14,500 | INFO     | transexitcode: 0
[2025-11-27 14:55:46] 2025-11-27 19:55:14,500 | INFO     | exeerrorcode: 0
[2025-11-27 14:55:46] 2025-11-27 19:55:14,501 | INFO     | exeerrordiag: 
[2025-11-27 14:55:46] 2025-11-27 19:55:14,501 | INFO     | exitcode: 0
[2025-11-27 14:55:46] 2025-11-27 19:55:14,501 | INFO     | exitmsg: OK
[2025-11-27 14:55:46] 2025-11-27 19:55:14,501 | INFO     | cpuconsumptiontime: 312056 s
[2025-11-27 14:55:46] 2025-11-27 19:55:14,501 | INFO     | nevents: 1000
[2025-11-27 14:55:46] 2025-11-27 19:55:14,501 | INFO     | neventsw: 0
[2025-11-27 14:55:46] 2025-11-27 19:55:14,502 | INFO     | pid: 23390
[2025-11-27 14:55:46] 2025-11-27 19:55:14,502 | INFO     | pgrp: 23390
[2025-11-27 14:55:46] 2025-11-27 19:55:14,502 | INFO     | corecount: 8
[2025-11-27 14:55:46] 2025-11-27 19:55:14,502 | INFO     | event service: False
[2025-11-27 14:55:46] 2025-11-27 19:55:14,502 | INFO     | sizes: {0: 2284093, 1: 2284292, 6: 2284554, 12: 2284582, 40100: 2328144, 40103: 2337138, 40106: 2337322, 40112: 2337632}
[2025-11-27 14:55:46] 2025-11-27 19:55:14,502 | INFO     | --------------------------------------------------
[2025-11-27 14:55:46] 2025-11-27 19:55:14,503 | INFO     | 
[2025-11-27 14:55:46] 2025-11-27 19:55:14,503 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 14:55:46] 2025-11-27 19:55:14,530 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,530 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,531 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,531 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,531 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,531 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,531 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,531 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,532 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,532 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,532 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,532 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,532 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,532 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,533 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,533 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,533 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,533 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:55:46] 2025-11-27 19:55:14,533 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,534 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:55:46] 2025-11-27 19:55:14,534 | INFO     | job 6897998869 has completed (purged errors)
[2025-11-27 14:55:46] 2025-11-27 19:55:14,534 | INFO     | overall cleanup function is called
[2025-11-27 14:55:46] 2025-11-27 19:55:15,548 | INFO     | --- collectZombieJob: --- 10, [23390]
[2025-11-27 14:55:46] 2025-11-27 19:55:15,548 | INFO     | zombie collector waiting for pid 23390
[2025-11-27 14:55:46] 2025-11-27 19:55:15,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:55:46] 2025-11-27 19:55:15,549 | INFO     | collected zombie processes
[2025-11-27 14:55:46] 2025-11-27 19:55:15,549 | INFO     | will attempt to kill all subprocesses of pid=23390
[2025-11-27 14:55:46] 2025-11-27 19:55:15,635 | INFO     | process IDs to be killed: [23390] (in reverse order)
[2025-11-27 14:55:46] 2025-11-27 19:55:15,690 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:55:46] 2025-11-27 19:55:15,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:55:46] 2025-11-27 19:55:15,695 | INFO     | did not find any defunct processes belonging to 23390
[2025-11-27 14:55:46] 2025-11-27 19:55:15,698 | INFO     | did not find any defunct processes belonging to 23390
[2025-11-27 14:55:46] 2025-11-27 19:55:15,700 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:55:46] 2025-11-27 19:55:15,700 | INFO     | ready for new job
[2025-11-27 14:55:46] 2025-11-27 19:55:15,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:55:46] 2025-11-27 19:55:15,703 | INFO     | ***************************************
[2025-11-27 14:55:46] 2025-11-27 19:55:15,703 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:55:46] 2025-11-27 19:55:15,703 | INFO     | ***************************************
[2025-11-27 14:55:46] 2025-11-27 19:55:15,704 | INFO     | 
[2025-11-27 14:55:46] 2025-11-27 19:55:15,704 | INFO     | architecture information:
[2025-11-27 14:55:46] 2025-11-27 19:55:15,705 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:55:46] 2025-11-27 19:55:15,722 | INFO     | cat /etc/os-release:
[2025-11-27 14:55:46] NAME="CentOS Linux"
[2025-11-27 14:55:46] VERSION="7 (Core)"
[2025-11-27 14:55:46] ID="centos"
[2025-11-27 14:55:46] ID_LIKE="rhel fedora"
[2025-11-27 14:55:46] VERSION_ID="7"
[2025-11-27 14:55:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:55:46] ANSI_COLOR="0;31"
[2025-11-27 14:55:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:55:46] HOME_URL="https://www.centos.org/"
[2025-11-27 14:55:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:55:46] 
[2025-11-27 14:55:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:55:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:55:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:55:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:55:46] 
[2025-11-27 14:55:46] 2025-11-27 19:55:15,722 | INFO     | ***************************************
[2025-11-27 14:55:46] 2025-11-27 19:55:16,225 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 14:55:46] 2025-11-27 19:55:16,244 | INFO     | sufficient remaining disk space (17466130432 B)
[2025-11-27 14:55:46] 2025-11-27 19:55:16,245 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:55:46] 2025-11-27 19:55:16,245 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:55:46] 2025-11-27 19:55:16,245 | INFO     | update_server=False
[2025-11-27 14:55:46] 2025-11-27 19:55:16,246 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:55:46] 2025-11-27 19:55:16,246 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:55:46] 2025-11-27 19:55:16,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:55:46] 2025-11-27 19:55:16,247 | INFO     | aborting loop
[2025-11-27 14:55:46] 2025-11-27 19:55:16,438 | INFO     | all job control threads have been joined
[2025-11-27 14:55:46] 2025-11-27 19:55:16,653 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:55:46] 2025-11-27 19:55:16,866 | INFO     | all data control threads have been joined
[2025-11-27 14:55:46] 2025-11-27 19:55:17,189 | INFO     | all payload control threads have been joined
[2025-11-27 14:55:46] 2025-11-27 19:55:17,251 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:17,252 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:17,252 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:17,439 | INFO     | [job] control thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:17,441 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:17,608 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:17,609 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:17,752 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:17,851 | INFO     | [job] validate thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:17,855 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:17,872 | INFO     | [data] control thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:17,932 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:18,195 | INFO     | [payload] control thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:18,454 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:18,658 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:18,943 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:55:46] 2025-11-27 19:55:22,949 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:55:46] 2025-11-27 19:55:32,106 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:55:46] 2025-11-27 19:55:32,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038018139968)>', '<ExcThread(monitor, started 140037568046848)>']
[2025-11-27 14:55:46] 2025-11-27 19:55:37,322 | INFO     | all workflow threads have been joined
[2025-11-27 14:55:46] 2025-11-27 19:55:37,323 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:55:46] 2025-11-27 19:55:37,323 | INFO     | traces error code: 0
[2025-11-27 14:55:46] 2025-11-27 19:55:37,324 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:55:46] 2025-11-27 19:55:46,183 | INFO     | PID=16935 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 14:55:46] 2025-11-27 19:55:46,184 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:55:46] 2025-11-27 19:55:46,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:55:46] 2025-11-27 19:55:46,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:55:46] 2025-11-27 19:55:46,184 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:55:46] 2025-11-27 19:55:46,184 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 14:55:46] 2025-11-27 19:55:46,185 | INFO     | [monitor] control thread has ended
[2025-11-27 14:55:46] 2025-11-27 19:55:46,296 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:55:46] 2025-11-27 19:55:46,301 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:55:46] 2025-11-27 19:55:46,306 [wrapper] pilotpid: 16935
[2025-11-27 14:55:46] 2025-11-27 19:55:46,311 [wrapper] Pilot exit status: 0
[2025-11-27 14:55:46] 2025-11-27 19:55:46,327 [wrapper] pandaids: 6897998869 6897998869
[2025-11-27 14:55:46] 2025-11-27 19:55:46,371 [wrapper] cleanup supervisor_pilot 21744 16936
[2025-11-27 14:55:46] 2025-11-27 19:55:46,376 [wrapper] Test setup, not cleaning
[2025-11-27 14:55:46] 2025-11-27 19:55:46,381 [wrapper] apfmon messages muted
[2025-11-27 14:55:46] 2025-11-27 19:55:46,386 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:55:46] 2025-11-27 19:55:46,390 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:55:46]  *** Error codes and diagnostics ***
[2025-11-27 14:55:46]     "exeErrorCode": 0,
[2025-11-27 14:55:46]     "exeErrorDiag": "",
[2025-11-27 14:55:46]     "pilotErrorCode": 0,
[2025-11-27 14:55:46]     "pilotErrorDiag": "",
[2025-11-27 14:55:46]  *** Listing of results directory ***
[2025-11-27 14:55:46] total 1721804
[2025-11-27 14:55:46] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 21:35 queuedata.json
[2025-11-27 14:55:46] -rwx------ 1 boincer umatlas     36292 Nov 25 21:38 runpilot2-wrapper.sh
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 21:38 pilot3.tar.gz
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas       100 Nov 26 18:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:55:46] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 18:26 run_atlas
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas       105 Nov 26 18:26 job.xml
[2025-11-27 14:55:46] -rw-r--r-- 3 boincer umatlas 413158160 Nov 26 18:26 EVNT.47483658._002383.pool.root.1
[2025-11-27 14:55:46] -rw-r--r-- 3 boincer umatlas 413158160 Nov 26 18:26 ATLAS.root_0
[2025-11-27 14:55:46] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 18:26 start_atlas.sh
[2025-11-27 14:55:46] drwxrwx--x 2 boincer umatlas      4096 Nov 26 18:26 shared
[2025-11-27 14:55:46] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 18:26 input.tar.gz
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas         0 Nov 26 18:26 boinc_lockfile
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas      2785 Nov 27 03:46 pandaJob.out
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas        57 Nov 27 03:46 setup.sh.local
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas    991573 Nov 27 03:46 agis_schedconf.cvmfs.json
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas       533 Nov 27 14:45 boinc_task_state.xml
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas      5913 Nov 27 14:49 init_data.xml
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas 917988061 Nov 27 14:54 HITS.47556161._003653.pool.root.1
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas        96 Nov 27 14:54 pilot_heartbeat.json
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas      1060 Nov 27 14:54 memory_monitor_summary.json
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas   1516240 Nov 27 14:55 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas   1924427 Nov 27 14:55 log.47556161._003653.job.log.tgz.1
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas      8658 Nov 27 14:55 heartbeat.json
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 14:55 boinc_mmap_file
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas        29 Nov 27 14:55 wrapper_checkpoint.txt
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas       815 Nov 27 14:55 pilotlog.txt
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas   5527984 Nov 27 14:55 log.47556161._003653.job.log.1
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas       353 Nov 27 14:55 output.list
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas       620 Nov 27 14:55 runtime_log
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas   7475200 Nov 27 14:55 result.tar.gz
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas      9428 Nov 27 14:55 runtime_log.err
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas       792 Nov 27 14:55 LTvNDmxbKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2mJKDm8f4Lpn.diag
[2025-11-27 14:55:46] -rw-r--r-- 1 boincer umatlas     23429 Nov 27 14:55 stderr.txt
[2025-11-27 14:55:46] HITS file was successfully produced:
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas 917988061 Nov 27 14:54 shared/HITS.pool.root.1
[2025-11-27 14:55:46]  *** Contents of shared directory: ***
[2025-11-27 14:55:46] total 1307852
[2025-11-27 14:55:46] -rw-r--r-- 3 boincer umatlas 413158160 Nov 26 18:26 ATLAS.root_0
[2025-11-27 14:55:46] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 18:26 start_atlas.sh
[2025-11-27 14:55:46] -rw-r--r-- 2 boincer umatlas    590103 Nov 26 18:26 input.tar.gz
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas 917988061 Nov 27 14:54 HITS.pool.root.1
[2025-11-27 14:55:46] -rw------- 1 boincer umatlas   7475200 Nov 27 14:55 result.tar.gz
14:55:48 (13217): run_atlas exited; CPU time 310235.001646
14:55:48 (13217): called boinc_finish(0)

</stderr_txt>
]]>

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