Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:09:54 (3348697): wrapper (7.7.26015): starting
19:09:54 (3348697): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:09:54] Arguments: --nthreads 8
[2025-11-26 19:09:54] Threads: 8
[2025-11-26 19:09:54] Checking for CVMFS
[2025-11-26 19:09:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:09:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:09:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:09:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:09:55] 2.13.3.0 12460 30751 351380 153340 1 1046 17979365 32935936 56701 16776704 0 320502161 99.642 296631632 36890 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 19:09:55] CVMFS is ok
[2025-11-26 19:09:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:09:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:09:55] Further information can be found at the LHC@home message board.
[2025-11-26 19:09:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:09:55] Checking for apptainer binary...
[2025-11-26 19:09:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:09:55] Running /usr/bin/apptainer --version
[2025-11-26 19:09:55] apptainer version 1.4.4-1.el9
[2025-11-26 19:09:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:09:55] c7-6-31.aglt2.org
[2025-11-26 19:09:55] apptainer works
[2025-11-26 19:09:55] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:09:55] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:09:55] Starting ATLAS job with PandaID=6897881447
[2025-11-26 19:09:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:20:07 (3348697): BOINC client no longer exists - exiting
23:20:07 (3348697): timer handler: client dead, exiting
23:21:23 (1633931): wrapper (7.7.26015): starting
23:21:23 (1633931): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 23:21:23] Arguments: --nthreads 11
[2025-11-26 23:21:23] Threads: 11
[2025-11-26 23:21:23] This job has been restarted, cleaning up previous attempt
[2025-11-26 23:21:23] Checking for CVMFS
[2025-11-26 23:21:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:21:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:21:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:21:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:21:23] 2.13.3.0 12460 31002 334584 153347 2 385 26515591 32935936 54673 16776704 0 323441935 99.643 298805760 36890 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 23:21:23] CVMFS is ok
[2025-11-26 23:21:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:21:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:21:23] Further information can be found at the LHC@home message board.
[2025-11-26 23:21:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:21:23] Checking for apptainer binary...
[2025-11-26 23:21:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:21:23] Running /usr/bin/apptainer --version
[2025-11-26 23:21:23] apptainer version 1.4.4-1.el9
[2025-11-26 23:21:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:21:23] c7-6-31.aglt2.org
[2025-11-26 23:21:23] apptainer works
[2025-11-26 23:21:23] Set ATHENA_PROC_NUMBER=11
[2025-11-26 23:21:23] Set ATHENA_CORE_NUMBER=11
[2025-11-26 23:21:23] Starting ATLAS job with PandaID=6897881447
[2025-11-26 23:21:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:03:15]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:03:15] 2025-11-27 16:02:24,778 | INFO     | monitor loop #2047: job 0:6897881447 is in state 'finished'
[2025-11-27 11:03:15] 2025-11-27 16:02:24,785 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:03:15] 2025-11-27 16:02:25,151 | INFO     | time since job start (42050s) is within the limit (172800.0s)
[2025-11-27 11:03:15] 2025-11-27 16:02:27,160 | INFO     | time since job start (42052s) is within the limit (172800.0s)
[2025-11-27 11:03:15] 2025-11-27 16:02:27,289 | INFO     | monitor loop #2048: job 0:6897881447 is in state 'finished'
[2025-11-27 11:03:15] 2025-11-27 16:02:27,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:03:15] 2025-11-27 16:02:29,167 | INFO     | time since job start (42054s) is within the limit (172800.0s)
[2025-11-27 11:03:15] 2025-11-27 16:02:29,798 | INFO     | monitor loop #2049: job 0:6897881447 is in state 'finished'
[2025-11-27 11:03:15] 2025-11-27 16:02:29,798 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:03:15] 2025-11-27 16:02:32,340 | INFO     | monitor loop #2050: job 0:6897881447 is in state 'finished'
[2025-11-27 11:03:15] 2025-11-27 16:02:32,340 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:03:15] 2025-11-27 16:02:33,385 | INFO     | PID=1656732 has CPU usage=17.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 11:03:15] 2025-11-27 16:02:33,386 | INFO     | .. there are 95 such processes running
[2025-11-27 11:03:15] 2025-11-27 16:02:34,386 | INFO     | time since job start (42059s) is within the limit (172800.0s)
[2025-11-27 11:03:15] 2025-11-27 16:02:34,851 | INFO     | monitor loop #2051: job 0:6897881447 is in state 'finished'
[2025-11-27 11:03:15] 2025-11-27 16:02:34,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:03:15] 2025-11-27 16:02:36,265 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 11:03:15] 2025-11-27 16:02:36,326 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3392.0486770833336
[2025-11-27 11:03:15] 2025-11-27 16:02:36,395 | INFO     | time since job start (42061s) is within the limit (172800.0s)
[2025-11-27 11:03:15] 2025-11-27 16:02:36,396 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897881447/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:03:15] 2025-11-27 16:02:36,396 | INFO     | extracted standard info from prmon json
[2025-11-27 11:03:15] 2025-11-27 16:02:36,396 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:03:15] 2025-11-27 16:02:36,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:03:15] 2025-11-27 16:02:36,510 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:03:15] 2025-11-27 16:02:36,511 | INFO     | sum of square deviations: 101422455174.7346
[2025-11-27 11:03:15] 2025-11-27 16:02:36,526 | INFO     | sum of deviations: 1999648425616.808
[2025-11-27 11:03:15] 2025-11-27 16:02:36,526 | INFO     | mean x: 1764238308.2060957
[2025-11-27 11:03:15] 2025-11-27 16:02:36,526 | INFO     | mean y: 10370138.761973875
[2025-11-27 11:03:15] 2025-11-27 16:02:36,526 | INFO     | intersect: -34773409738.57634
[2025-11-27 11:03:15] 2025-11-27 16:02:36,527 | INFO     | chi2: 31.365885560952975
[2025-11-27 11:03:15] 2025-11-27 16:02:36,532 | INFO     | sum of square deviations: 99230648917.40804
[2025-11-27 11:03:15] 2025-11-27 16:02:36,548 | INFO     | sum of deviations: 3063708899733.194
[2025-11-27 11:03:15] 2025-11-27 16:02:36,548 | INFO     | mean x: 1764238155.7149122
[2025-11-27 11:03:15] 2025-11-27 16:02:36,548 | INFO     | mean y: 10444170.20614035
[2025-11-27 11:03:15] 2025-11-27 16:02:36,548 | INFO     | intersect: -54459744202.858444
[2025-11-27 11:03:15] 2025-11-27 16:02:36,549 | INFO     | chi2: 26.40714954209207
[2025-11-27 11:03:15] 2025-11-27 16:02:36,549 | INFO     | current chi2=26.40714954209207 (change=15.809328925927016 %)
[2025-11-27 11:03:15] 2025-11-27 16:02:36,549 | INFO     | right removable region: 683
[2025-11-27 11:03:15] 2025-11-27 16:02:36,549 | INFO     | sum of square deviations: 99230225702.26164
[2025-11-27 11:03:15] 2025-11-27 16:02:36,568 | INFO     | sum of deviations: 1064527736508.6276
[2025-11-27 11:03:15] 2025-11-27 16:02:36,569 | INFO     | mean x: 1764238460.7119882
[2025-11-27 11:03:15] 2025-11-27 16:02:36,569 | INFO     | mean y: 10435163.130116958
[2025-11-27 11:03:15] 2025-11-27 16:02:36,569 | INFO     | intersect: -18916063914.664413
[2025-11-27 11:03:15] 2025-11-27 16:02:36,569 | INFO     | chi2: 27.24513463112086
[2025-11-27 11:03:15] 2025-11-27 16:02:36,569 | INFO     | current chi2=27.24513463112086 (change=13.137684003291753 %)
[2025-11-27 11:03:15] 2025-11-27 16:02:36,569 | INFO     | left removable region: 10
[2025-11-27 11:03:15] 2025-11-27 16:02:36,570 | INFO     | sum of square deviations: 94519611469.12025
[2025-11-27 11:03:15] 2025-11-27 16:02:36,590 | INFO     | sum of deviations: 1528613974870.3572
[2025-11-27 11:03:15] 2025-11-27 16:02:36,590 | INFO     | mean x: 1764238430.2243686
[2025-11-27 11:03:15] 2025-11-27 16:02:36,590 | INFO     | mean y: 10581745.368499257
[2025-11-27 11:03:15] 2025-11-27 16:02:36,590 | INFO     | intersect: -28521481363.305767
[2025-11-27 11:03:15] 2025-11-27 16:02:36,591 | INFO     | chi2: 18.395333777454233
[2025-11-27 11:03:15] 2025-11-27 16:02:36,591 | INFO     | current memory leak: 16.17 B/s (using 673 data points, chi2=18.40)
[2025-11-27 11:03:15] 2025-11-27 16:02:36,592 | INFO     | could have reported an average CPU frequency of 3411 MHz (26 samples)
[2025-11-27 11:03:15] 2025-11-27 16:02:36,592 | INFO     | ..............................
[2025-11-27 11:03:15] 2025-11-27 16:02:36,592 | INFO     | . Timing measurements:
[2025-11-27 11:03:15] 2025-11-27 16:02:36,592 | INFO     | . get job = 0 s
[2025-11-27 11:03:15] 2025-11-27 16:02:36,592 | INFO     | . initial setup = 2 s
[2025-11-27 11:03:15] 2025-11-27 16:02:36,592 | INFO     | . payload setup = 6 s
[2025-11-27 11:03:15] 2025-11-27 16:02:36,592 | INFO     | . stage-in = 0 s
[2025-11-27 11:03:15] 2025-11-27 16:02:36,592 | INFO     | . payload execution = 42010 s
[2025-11-27 11:03:15] 2025-11-27 16:02:36,592 | INFO     | . stage-out = 10 s
[2025-11-27 11:03:15] 2025-11-27 16:02:36,592 | INFO     | . log creation = 3 s
[2025-11-27 11:03:15] 2025-11-27 16:02:36,592 | INFO     | ..............................
[2025-11-27 11:03:15] 2025-11-27 16:02:36,892 | INFO     | 
[2025-11-27 11:03:15] 2025-11-27 16:02:36,892 | INFO     | job summary report
[2025-11-27 11:03:15] 2025-11-27 16:02:36,892 | INFO     | --------------------------------------------------
[2025-11-27 11:03:15] 2025-11-27 16:02:36,892 | INFO     | PanDA job id: 6897881447
[2025-11-27 11:03:15] 2025-11-27 16:02:36,892 | INFO     | task id: 47556173
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | errors: (none)
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | pilot state: finished 
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | transexitcode: 0
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | exeerrorcode: 0
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | exeerrordiag: 
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | exitcode: 0
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | exitmsg: OK
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | cpuconsumptiontime: 185527 s
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | nevents: 1000
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | neventsw: 0
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | pid: 1710121
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | pgrp: 1710121
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | corecount: 11
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | event service: False
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | sizes: {0: 2284264, 5: 2284526, 11: 2284582, 42019: 2328299, 42029: 2337293, 42032: 2337349, 42047: 2337723}
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | --------------------------------------------------
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | 
[2025-11-27 11:03:15] 2025-11-27 16:02:36,893 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 11:03:15] 2025-11-27 16:02:36,946 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,947 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:03:15] 2025-11-27 16:02:36,948 | INFO     | job 6897881447 has completed (purged errors)
[2025-11-27 11:03:15] 2025-11-27 16:02:36,948 | INFO     | overall cleanup function is called
[2025-11-27 11:03:15] 2025-11-27 16:02:37,966 | INFO     | --- collectZombieJob: --- 10, [1710121]
[2025-11-27 11:03:15] 2025-11-27 16:02:37,967 | INFO     | zombie collector waiting for pid 1710121
[2025-11-27 11:03:15] 2025-11-27 16:02:37,967 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:03:15] 2025-11-27 16:02:37,968 | INFO     | collected zombie processes
[2025-11-27 11:03:15] 2025-11-27 16:02:37,974 | INFO     | will attempt to kill all subprocesses of pid=1710121
[2025-11-27 11:03:15] 2025-11-27 16:02:40,553 | INFO     | process IDs to be killed: [1710121] (in reverse order)
[2025-11-27 11:03:15] 2025-11-27 16:02:40,871 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:03:15] 2025-11-27 16:02:40,872 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:03:15] 2025-11-27 16:02:40,967 | INFO     | did not find any defunct processes belonging to 1710121
[2025-11-27 11:03:15] 2025-11-27 16:02:41,510 | INFO     | did not find any defunct processes belonging to 1710121
[2025-11-27 11:03:15] 2025-11-27 16:02:41,608 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:03:15] 2025-11-27 16:02:41,609 | INFO     | ready for new job
[2025-11-27 11:03:15] 2025-11-27 16:02:41,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:03:15] 2025-11-27 16:02:41,612 | INFO     | ***************************************
[2025-11-27 11:03:15] 2025-11-27 16:02:41,612 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:03:15] 2025-11-27 16:02:41,612 | INFO     | ***************************************
[2025-11-27 11:03:15] 2025-11-27 16:02:41,612 | INFO     | 
[2025-11-27 11:03:15] 2025-11-27 16:02:41,665 | INFO     | architecture information:
[2025-11-27 11:03:15] 2025-11-27 16:02:41,709 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:03:15] 2025-11-27 16:02:41,860 | INFO     | cat /etc/os-release:
[2025-11-27 11:03:15] NAME="CentOS Linux"
[2025-11-27 11:03:15] VERSION="7 (Core)"
[2025-11-27 11:03:15] ID="centos"
[2025-11-27 11:03:15] ID_LIKE="rhel fedora"
[2025-11-27 11:03:15] VERSION_ID="7"
[2025-11-27 11:03:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:03:15] ANSI_COLOR="0;31"
[2025-11-27 11:03:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:03:15] HOME_URL="https://www.centos.org/"
[2025-11-27 11:03:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:03:15] 
[2025-11-27 11:03:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:03:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:03:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:03:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:03:15] 
[2025-11-27 11:03:15] 2025-11-27 16:02:41,860 | INFO     | ***************************************
[2025-11-27 11:03:15] 2025-11-27 16:02:42,362 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 11:03:15] 2025-11-27 16:02:42,522 | INFO     | sufficient remaining disk space (62343086080 B)
[2025-11-27 11:03:15] 2025-11-27 16:02:42,522 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:03:15] 2025-11-27 16:02:42,522 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:03:15] 2025-11-27 16:02:42,522 | INFO     | update_server=False
[2025-11-27 11:03:15] 2025-11-27 16:02:42,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:03:15] 2025-11-27 16:02:42,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:03:15] 2025-11-27 16:02:42,523 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:03:15] 2025-11-27 16:02:42,836 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:03:15] 2025-11-27 16:02:42,846 | INFO     | all payload control threads have been joined
[2025-11-27 11:03:15] 2025-11-27 16:02:43,203 | INFO     | all data control threads have been joined
[2025-11-27 11:03:15] 2025-11-27 16:02:43,429 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:03:15] 2025-11-27 16:02:43,429 | INFO     | aborting loop
[2025-11-27 11:03:15] 2025-11-27 16:02:43,527 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:43,528 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:43,562 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:43,634 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:43,708 | INFO     | all job control threads have been joined
[2025-11-27 11:03:15] 2025-11-27 16:02:43,852 | INFO     | [payload] control thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:44,195 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:44,205 | INFO     | [job] validate thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:44,209 | INFO     | [data] control thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:44,317 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:44,452 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:44,715 | INFO     | [job] control thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:44,742 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:44,843 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:44,880 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:44,963 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:46,535 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:03:15] 2025-11-27 16:02:52,504 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:03:15] 2025-11-27 16:02:53,133 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140409554679616)>', '<ExcThread(monitor, started 140408789137152)>']
[2025-11-27 11:03:15] 2025-11-27 16:02:58,161 | INFO     | all workflow threads have been joined
[2025-11-27 11:03:15] 2025-11-27 16:02:58,161 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:03:15] 2025-11-27 16:02:58,162 | INFO     | traces error code: 0
[2025-11-27 11:03:15] 2025-11-27 16:02:58,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:03:15] 2025-11-27 16:03:13,241 | INFO     | PID=1656732 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:03:15] 2025-11-27 16:03:13,242 | INFO     | .. there are 95 such processes running
[2025-11-27 11:03:15] 2025-11-27 16:03:13,242 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:03:15] 2025-11-27 16:03:13,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:03:15] 2025-11-27 16:03:13,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:03:15] 2025-11-27 16:03:13,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:03:15] 2025-11-27 16:03:13,242 | INFO     | [monitor] control thread has ended
[2025-11-27 11:03:15] 2025-11-27 16:03:13,776 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:03:15] 2025-11-27 16:03:13,838 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:03:15] 2025-11-27 16:03:13,882 [wrapper] pilotpid: 1656732
[2025-11-27 11:03:15] 2025-11-27 16:03:13,935 [wrapper] Pilot exit status: 0
[2025-11-27 11:03:15] 2025-11-27 16:03:14,142 [wrapper] pandaids: 6897881447 6897881447
[2025-11-27 11:03:15] 2025-11-27 16:03:14,457 [wrapper] cleanup supervisor_pilot  236950 1656733
[2025-11-27 11:03:15] 2025-11-27 16:03:14,522 [wrapper] Test setup, not cleaning
[2025-11-27 11:03:15] 2025-11-27 16:03:14,567 [wrapper] apfmon messages muted
[2025-11-27 11:03:15] 2025-11-27 16:03:14,609 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:03:15] 2025-11-27 16:03:14,656 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:03:15]  *** Error codes and diagnostics ***
[2025-11-27 11:03:15]     "exeErrorCode": 0,
[2025-11-27 11:03:15]     "exeErrorDiag": "",
[2025-11-27 11:03:15]     "pilotErrorCode": 0,
[2025-11-27 11:03:15]     "pilotErrorDiag": "",
[2025-11-27 11:03:15]  *** Listing of results directory ***
[2025-11-27 11:03:15] total 1720300
[2025-11-27 11:03:15] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 11:03:15] -rwx------. 1 boincer umatlas     36292 Nov 25 21:18 runpilot2-wrapper.sh
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:18 queuedata.json
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:03:15] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:09 run_atlas
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:09 job.xml
[2025-11-27 11:03:15] -rw-r--r--. 3 boincer umatlas 411192471 Nov 26 19:09 EVNT.47483658._003148.pool.root.1
[2025-11-27 11:03:15] -rw-r--r--. 3 boincer umatlas 411192471 Nov 26 19:09 ATLAS.root_0
[2025-11-27 11:03:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:09 start_atlas.sh
[2025-11-27 11:03:15] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:09 shared
[2025-11-27 11:03:15] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 19:09 input.tar.gz
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:09 boinc_lockfile
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 23:21 pandaJob.out
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas      4352 Nov 26 23:21 stderr.txt
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas        57 Nov 26 23:21 setup.sh.local
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas    991570 Nov 26 23:21 agis_schedconf.cvmfs.json
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:46 boinc_task_state.xml
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas 921511686 Nov 27 10:56 HITS.47556173._001045.pool.root.1
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas      6946 Nov 27 11:01 init_data.xml
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas      1076 Nov 27 11:02 memory_monitor_summary.json
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:02 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas   2192188 Nov 27 11:02 log.47556173._001045.job.log.tgz.1
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas        96 Nov 27 11:02 pilot_heartbeat.json
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas      8660 Nov 27 11:02 heartbeat.json
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:03 boinc_mmap_file
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas       823 Nov 27 11:03 pilotlog.txt
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:03 wrapper_checkpoint.txt
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas   4696774 Nov 27 11:03 log.47556173._001045.job.log.1
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas       353 Nov 27 11:03 output.list
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:03 runtime_log
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas   6912000 Nov 27 11:03 result.tar.gz
[2025-11-27 11:03:15] -rw-r--r--. 1 boincer umatlas      9425 Nov 27 11:03 runtime_log.err
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas       790 Nov 27 11:03 RF3NDmxHKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKmJKDmLba35m.diag
[2025-11-27 11:03:15] HITS file was successfully produced:
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas 921511686 Nov 27 10:56 shared/HITS.pool.root.1
[2025-11-27 11:03:15]  *** Contents of shared directory: ***
[2025-11-27 11:03:15] total 1308828
[2025-11-27 11:03:15] -rw-r--r--. 3 boincer umatlas 411192471 Nov 26 19:09 ATLAS.root_0
[2025-11-27 11:03:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:09 start_atlas.sh
[2025-11-27 11:03:15] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 19:09 input.tar.gz
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas 921511686 Nov 27 10:56 HITS.pool.root.1
[2025-11-27 11:03:15] -rw-------. 1 boincer umatlas   6912000 Nov 27 11:03 result.tar.gz
11:03:17 (1633931): run_atlas exited; CPU time 186153.510818
11:03:17 (1633931): called boinc_finish(0)

</stderr_txt>
]]>

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