Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:06:43 (3853330): wrapper (7.7.26015): starting
15:06:43 (3853330): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:06:43] Arguments: --nthreads 8
[2025-11-26 15:06:43] Threads: 8
[2025-11-26 15:06:43] Checking for CVMFS
[2025-11-26 15:06:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:06:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:06:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:06:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:06:44] 2.11.3.0 476926 29025 209496 153337 3 463 45025625 45568000 14682 130560 0 194691687 99.790 128918530 20733 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-11-26 15:06:44] CVMFS is ok
[2025-11-26 15:06:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:06:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:06:44] Further information can be found at the LHC@home message board.
[2025-11-26 15:06:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:06:44] Checking for apptainer binary...
[2025-11-26 15:06:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:06:44] Running /usr/bin/apptainer --version
[2025-11-26 15:06:44] apptainer version 1.4.1-1.el9
[2025-11-26 15:06:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:06:44] wns0002.triumf.lcg
[2025-11-26 15:06:44] apptainer works
[2025-11-26 15:06:44] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:06:44] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:06:44] Starting ATLAS job with PandaID=6898271867
[2025-11-26 15:06:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:11:01]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:11:01] 2025-11-26 23:10:12,572 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 15:11:01] 2025-11-26 23:10:12,573 | WARNING  | wrong length of table data, x=[1764198438.0], y=[1399.0] (must be same and length>=4)
[2025-11-26 15:11:01] 2025-11-26 23:10:12,573 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | ..............................
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . Timing measurements:
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . get job = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . initial setup = 3 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . payload setup = 4 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . stage-in = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . payload execution = 55 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . stage-out = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . log creation = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | ..............................
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 15:11:01] 2025-11-26 23:10:12,575 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898271867/pilotlog.txt
[2025-11-26 15:11:01] 2025-11-26 23:10:12,586 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 15:11:01] - Log from pilotlog.txt -
[2025-11-26 15:11:01] 2025-11-26 23:10:12,571 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898271867/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:11:01] 2025-11-26 23:10:12,571 | INFO     | extracted standard info from prmon json
[2025-11-26 15:11:01] 2025-11-26 23:10:12,572 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:11:01] 2025-11-26 23:10:12,572 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:11:01] 2025-11-26 23:10:12,572 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 15:11:01] 2025-11-26 23:10:12,572 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 15:11:01] 2025-11-26 23:10:12,573 | WARNING  | wrong length of table data, x=[1764198438.0], y=[1399.0] (must be same and length>=4)
[2025-11-26 15:11:01] 2025-11-26 23:10:12,573 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | ..............................
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . Timing measurements:
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . get job = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . initial setup = 3 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . payload setup = 4 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . stage-in = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . payload execution = 55 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . stage-out = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . log creation = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | ..............................
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 15:11:01] 2025-11-26 23:10:12,575 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898271867/pilotlog.txt
[2025-11-26 15:11:01] 2025-11-26 23:10:12,586 | WARNING  | 
[2025-11-26 15:11:01] [begin log extracts]
[2025-11-26 15:11:01] - Log from pilotlog.txt -
[2025-11-26 15:11:01] 2025-11-26 23:10:12,571 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6898271867/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:11:01] 2025-11-26 23:10:12,571 | INFO     | extracted standard info from prmon json
[2025-11-26 15:11:01] 2025-11-26 23:10:12,572 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:11:01] 2025-11-26 23:10:12,572 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:11:01] 2025-11-26 23:10:12,572 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 15:11:01] 2025-11-26 23:10:12,572 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 15:11:01] 2025-11-26 23:10:12,573 | WARNING  | wrong length of table data, x=[1764198438.0], y=[1399.0] (must be same and length>=4)
[2025-11-26 15:11:01] 2025-11-26 23:10:12,573 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | ..............................
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . Timing measurements:
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . get job = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . initial setup = 3 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . payload setup = 4 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . stage-in = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . payload execution = 55 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . stage-out = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | . log creation = 0 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | ..............................
[2025-11-26 15:11:01] 2025-11-26 23:10:12,574 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 15:11:01] 2025-11-26 23:10:12,575 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6898271867/pilotlog.txt
[2025-11-26 15:11:01] [end log extracts]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,586 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 15:11:01] 2025-11-26 23:10:12,587 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 15:11:01] 2025-11-26 23:10:12,924 | INFO     | 
[2025-11-26 15:11:01] 2025-11-26 23:10:12,924 | INFO     | job summary report
[2025-11-26 15:11:01] 2025-11-26 23:10:12,924 | INFO     | --------------------------------------------------
[2025-11-26 15:11:01] 2025-11-26 23:10:12,924 | INFO     | PanDA job id: 6898271867
[2025-11-26 15:11:01] 2025-11-26 23:10:12,924 | INFO     | task id: 47556173
[2025-11-26 15:11:01] 2025-11-26 23:10:12,924 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 15:08:06,021 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 15:11:01] 2025-11-26 23:10:12,924 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 15:11:01] 2025-11-26 23:10:12,924 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | pilot state: failed 
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | transexitcode: 65
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | exeerrorcode: 65
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | exitcode: 65
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | cpuconsumptiontime: 48 s
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | nevents: 0
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | neventsw: 0
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | pid: 3863543
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | pgrp: 3863543
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | corecount: 8
[2025-11-26 15:11:01] 2025-11-26 23:10:12,925 | INFO     | event service: False
[2025-11-26 15:11:01] 2025-11-26 23:10:12,926 | INFO     | sizes: {0: 2284141, 1: 2284340, 4: 2284602, 11: 2284630, 63: 2310154, 64: 2314604, 183: 2314742}
[2025-11-26 15:11:01] 2025-11-26 23:10:12,926 | INFO     | --------------------------------------------------
[2025-11-26 15:11:01] 2025-11-26 23:10:12,926 | INFO     | 
[2025-11-26 15:11:01] 2025-11-26 23:10:12,926 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 15:11:01] 2025-11-26 23:10:12,943 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,943 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,943 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,943 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,943 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,943 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:11:01] 2025-11-26 23:10:12,944 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,945 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:11:01] 2025-11-26 23:10:12,945 | INFO     | job 6898271867 has completed (purged errors)
[2025-11-26 15:11:01] 2025-11-26 23:10:12,945 | INFO     | overall cleanup function is called
[2025-11-26 15:11:01] 2025-11-26 23:10:13,952 | INFO     | --- collectZombieJob: --- 10, [3863543]
[2025-11-26 15:11:01] 2025-11-26 23:10:13,952 | INFO     | zombie collector waiting for pid 3863543
[2025-11-26 15:11:01] 2025-11-26 23:10:13,952 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:11:01] 2025-11-26 23:10:13,952 | INFO     | collected zombie processes
[2025-11-26 15:11:01] 2025-11-26 23:10:13,952 | INFO     | will attempt to kill all subprocesses of pid=3863543
[2025-11-26 15:11:01] 2025-11-26 23:10:14,125 | INFO     | process IDs to be killed: [3863543] (in reverse order)
[2025-11-26 15:11:01] 2025-11-26 23:10:14,178 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:11:01] 2025-11-26 23:10:14,178 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:11:01] 2025-11-26 23:10:14,184 | INFO     | did not find any defunct processes belonging to 3863543
[2025-11-26 15:11:01] 2025-11-26 23:10:14,189 | INFO     | did not find any defunct processes belonging to 3863543
[2025-11-26 15:11:01] 2025-11-26 23:10:14,190 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:11:01] 2025-11-26 23:10:14,190 | INFO     | ready for new job
[2025-11-26 15:11:01] 2025-11-26 23:10:14,191 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:11:01] 2025-11-26 23:10:14,192 | INFO     | ***************************************
[2025-11-26 15:11:01] 2025-11-26 23:10:14,192 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:11:01] 2025-11-26 23:10:14,192 | INFO     | ***************************************
[2025-11-26 15:11:01] 2025-11-26 23:10:14,192 | INFO     | 
[2025-11-26 15:11:01] 2025-11-26 23:10:14,193 | INFO     | architecture information:
[2025-11-26 15:11:01] 2025-11-26 23:10:14,194 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:11:01] 2025-11-26 23:10:14,203 | INFO     | cat /etc/os-release:
[2025-11-26 15:11:01] NAME="CentOS Linux"
[2025-11-26 15:11:01] VERSION="7 (Core)"
[2025-11-26 15:11:01] ID="centos"
[2025-11-26 15:11:01] ID_LIKE="rhel fedora"
[2025-11-26 15:11:01] VERSION_ID="7"
[2025-11-26 15:11:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:11:01] ANSI_COLOR="0;31"
[2025-11-26 15:11:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:11:01] HOME_URL="https://www.centos.org/"
[2025-11-26 15:11:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:11:01] 
[2025-11-26 15:11:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:11:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:11:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:11:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:11:01] 
[2025-11-26 15:11:01] 2025-11-26 23:10:14,203 | INFO     | ***************************************
[2025-11-26 15:11:01] 2025-11-26 23:10:14,706 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 15:11:01] 2025-11-26 23:10:14,715 | INFO     | sufficient remaining disk space (1196935872512 B)
[2025-11-26 15:11:01] 2025-11-26 23:10:14,716 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:11:01] 2025-11-26 23:10:14,716 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:11:01] 2025-11-26 23:10:14,717 | INFO     | update_server=False
[2025-11-26 15:11:01] 2025-11-26 23:10:14,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:11:01] 2025-11-26 23:10:14,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:11:01] 2025-11-26 23:10:14,852 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:11:01] 2025-11-26 23:10:14,852 | INFO     | aborting loop
[2025-11-26 15:11:01] 2025-11-26 23:10:14,992 | INFO     | all data control threads have been joined
[2025-11-26 15:11:01] 2025-11-26 23:10:15,448 | INFO     | all job control threads have been joined
[2025-11-26 15:11:01] 2025-11-26 23:10:15,722 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:15,788 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:15,857 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:15,858 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:15,904 | INFO     | all payload control threads have been joined
[2025-11-26 15:11:01] 2025-11-26 23:10:15,997 | INFO     | [data] control thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:16,416 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:16,453 | INFO     | [job] control thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:16,482 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:11:01] 2025-11-26 23:10:16,486 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:16,722 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:16,909 | INFO     | [payload] control thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:16,915 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:16,936 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:16,966 | INFO     | [job] validate thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:17,170 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:17,668 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:11:01] 2025-11-26 23:10:18,673 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:20,487 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:11:01] 2025-11-26 23:10:44,694 | INFO     | PID=3856997 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:11:01] 2025-11-26 23:10:44,695 | INFO     | .. there are 19 such processes running
[2025-11-26 15:11:01] 2025-11-26 23:10:44,695 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:11:01] 2025-11-26 23:10:44,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:11:01] 2025-11-26 23:10:44,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:11:01] 2025-11-26 23:10:54,257 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:11:01] 2025-11-26 23:10:55,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139903544080192)>', '<ExcThread(monitor, started 139902779909888)>']
[2025-11-26 15:11:01] 2025-11-26 23:10:56,755 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:11:01] 2025-11-26 23:10:56,755 | INFO     | [monitor] control thread has ended
[2025-11-26 15:11:01] 2025-11-26 23:11:01,012 | INFO     | all workflow threads have been joined
[2025-11-26 15:11:01] 2025-11-26 23:11:01,012 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:11:01] 2025-11-26 23:11:01,012 | INFO     | traces error code: 0
[2025-11-26 15:11:01] 2025-11-26 23:11:01,013 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:11:01] 2025-11-26 23:11:01,127 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:11:01] 2025-11-26 23:11:01,129 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:11:01] 2025-11-26 23:11:01,131 [wrapper] pilotpid: 3856997
[2025-11-26 15:11:01] 2025-11-26 23:11:01,133 [wrapper] Pilot exit status: 0
[2025-11-26 15:11:01] 2025-11-26 23:11:01,140 [wrapper] pandaids: 6898271867
[2025-11-26 15:11:01] 2025-11-26 23:11:01,174 [wrapper] cleanup supervisor_pilot 3857003 3856998
[2025-11-26 15:11:01] 2025-11-26 23:11:01,177 [wrapper] Test setup, not cleaning
[2025-11-26 15:11:01] 2025-11-26 23:11:01,179 [wrapper] apfmon messages muted
[2025-11-26 15:11:01] 2025-11-26 23:11:01,180 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:11:01] 2025-11-26 23:11:01,182 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:11:01]  *** Error codes and diagnostics ***
[2025-11-26 15:11:01]     "exeErrorCode": 65,
[2025-11-26 15:11:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 15:11:01]     "pilotErrorCode": 1305,
[2025-11-26 15:11:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 15:11:01]  *** Listing of results directory ***
[2025-11-26 15:11:01] total 404944
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc    576529 Nov 26 07:05 pilot3.tar.gz
[2025-11-26 15:11:01] -rwx------. 1 boinc boinc     36292 Nov 26 07:26 runpilot2-wrapper.sh
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc      5112 Nov 26 07:26 queuedata.json
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc       100 Nov 26 15:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:11:01] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 15:06 run_atlas
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc       105 Nov 26 15:06 job.xml
[2025-11-26 15:11:01] -rw-r--r--. 2 boinc boinc 410467440 Nov 26 15:06 EVNT.47483658._003192.pool.root.1
[2025-11-26 15:11:01] -rw-r--r--. 2 boinc boinc     15847 Nov 26 15:06 start_atlas.sh
[2025-11-26 15:11:01] drwxrwx--x. 2 boinc boinc      4096 Nov 26 15:06 shared
[2025-11-26 15:11:01] -rw-r--r--. 2 boinc boinc    590104 Nov 26 15:06 input.tar.gz
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc      6444 Nov 26 15:06 init_data.xml
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc         0 Nov 26 15:06 boinc_lockfile
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc      2786 Nov 26 15:06 pandaJob.out
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc    991546 Nov 26 15:06 agis_schedconf.cvmfs.json
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc   1516240 Nov 26 15:06 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:11:01] drwx------. 5 boinc boinc      4096 Nov 26 15:06 pilot3
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc       523 Nov 26 15:08 boinc_task_state.xml
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc       975 Nov 26 15:08 memory_monitor_summary.json
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc     48569 Nov 26 15:08 log.47556173._001487.job.log.tgz.1
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc        95 Nov 26 15:09 pilot_heartbeat.json
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc     10313 Nov 26 15:10 heartbeat.json
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc        23 Nov 26 15:10 wrapper_checkpoint.txt
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc      8192 Nov 26 15:11 boinc_mmap_file
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc      4823 Nov 26 15:11 pilotlog.txt
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc     92899 Nov 26 15:11 log.47556173._001487.job.log.1
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc       186 Nov 26 15:11 output.list
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc       620 Nov 26 15:11 runtime_log
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc    163840 Nov 26 15:11 result.tar.gz
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc      8634 Nov 26 15:11 runtime_log.err
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc       645 Nov 26 15:11 3J2MDm9aWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDml4MKDmd7uvAo.diag
[2025-11-26 15:11:01] -rw-r--r--. 1 boinc boinc     22386 Nov 26 15:11 stderr.txt
[2025-11-26 15:11:01] No HITS result produced
[2025-11-26 15:11:01]  *** Contents of shared directory: ***
[2025-11-26 15:11:01] total 401608
[2025-11-26 15:11:01] -rw-r--r--. 2 boinc boinc 410467440 Nov 26 15:06 ATLAS.root_0
[2025-11-26 15:11:01] -rw-r--r--. 2 boinc boinc     15847 Nov 26 15:06 start_atlas.sh
[2025-11-26 15:11:01] -rw-r--r--. 2 boinc boinc    590104 Nov 26 15:06 input.tar.gz
[2025-11-26 15:11:01] -rw-------. 1 boinc boinc    163840 Nov 26 15:11 result.tar.gz
15:11:02 (3853330): run_atlas exited; CPU time 47.728343
15:11:02 (3853330): called boinc_finish(0)

</stderr_txt>
]]>

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