Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:58:21 (1519411): wrapper (7.7.26015): starting
00:58:21 (1519411): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 00:58:21] Arguments: --nthreads 3
[2025-11-27 00:58:21] Threads: 3
[2025-11-27 00:58:21] Checking for CVMFS
[2025-11-27 00:58:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:58:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:58:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:58:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:58:21] 2.9.2.0 1414835 21 52216 153340 2 88 35782946 36864001 0 130560 0 313035 100.000 3 300 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 00:58:21] CVMFS is ok
[2025-11-27 00:58:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:58:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:58:21] Further information can be found at the LHC@home message board.
[2025-11-27 00:58:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:58:21] Checking for apptainer binary...
[2025-11-27 00:58:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:58:21] Running /usr/bin/apptainer --version
[2025-11-27 00:58:21] apptainer version 1.4.1-1.1
[2025-11-27 00:58:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:58:22] thA335
[2025-11-27 00:58:22] apptainer works
[2025-11-27 00:58:22] Set ATHENA_PROC_NUMBER=3
[2025-11-27 00:58:22] Set ATHENA_CORE_NUMBER=3
[2025-11-27 00:58:22] Starting ATLAS job with PandaID=6897998852
[2025-11-27 00:58:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:02:37]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:02:37] HOME_URL="https://www.centos.org/"
[2025-11-27 01:02:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:02:37] 
[2025-11-27 01:02:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:02:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:02:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:02:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:02:37] 
[2025-11-27 01:02:37] 2025-11-27 00:01:48,423 | INFO     | ***************************************
[2025-11-27 01:02:37] 2025-11-27 00:01:48,926 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 01:02:37] 2025-11-27 00:01:48,940 | INFO     | sufficient remaining disk space (825816514560 B)
[2025-11-27 01:02:37] 2025-11-27 00:01:48,940 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:02:37] 2025-11-27 00:01:48,940 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:02:37] 2025-11-27 00:01:48,940 | INFO     | update_server=False
[2025-11-27 01:02:37] 2025-11-27 00:01:48,940 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:02:37] 2025-11-27 00:01:48,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:02:37] 2025-11-27 00:01:48,941 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:02:37] 2025-11-27 00:01:48,941 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:02:37] 2025-11-27 00:01:48,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:02:37] 2025-11-27 00:01:48,941 | INFO     | aborting loop
[2025-11-27 01:02:37] 2025-11-27 00:01:49,116 | INFO     | all job control threads have been joined
[2025-11-27 01:02:37] 2025-11-27 00:01:49,913 | INFO     | all data control threads have been joined
[2025-11-27 01:02:37] 2025-11-27 00:01:49,921 | INFO     | all payload control threads have been joined
[2025-11-27 01:02:37] 2025-11-27 00:01:49,946 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:49,947 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:49,947 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:50,122 | INFO     | [job] control thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:50,184 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:50,233 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:50,728 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:50,849 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:50,878 | INFO     | [job] validate thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:50,919 | INFO     | [data] control thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:50,927 | INFO     | [payload] control thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:50,947 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:50,975 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:51,014 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:51,270 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:01:52,948 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:02:37] 2025-11-27 00:02:20,005 | INFO     | PID=1523141 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 01:02:37] 2025-11-27 00:02:20,005 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:02:37] 2025-11-27 00:02:20,005 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:02:37] 2025-11-27 00:02:20,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:02:37] 2025-11-27 00:02:31,212 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:02:37] 2025-11-27 00:02:32,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140615023400768)>', '<ExcThread(monitor, started 140614385518336)>']
[2025-11-27 01:02:37] 2025-11-27 00:02:33,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:02:37] 2025-11-27 00:02:33,075 | INFO     | [monitor] control thread has ended
[2025-11-27 01:02:37] 2025-11-27 00:02:37,780 | INFO     | all workflow threads have been joined
[2025-11-27 01:02:37] 2025-11-27 00:02:37,781 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:02:37] 2025-11-27 00:02:37,781 | INFO     | traces error code: 0
[2025-11-27 01:02:37] 2025-11-27 00:02:37,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:02:37] 2025-11-27 00:02:37,827 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:02:37] 2025-11-27 00:02:37,830 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:02:37] 2025-11-27 00:02:37,833 [wrapper] pilotpid: 1523141
[2025-11-27 01:02:37] 2025-11-27 00:02:37,836 [wrapper] Pilot exit status: 0
[2025-11-27 01:02:37] 2025-11-27 00:02:37,843 [wrapper] pandaids: 6897998852
[2025-11-27 01:02:37] 2025-11-27 00:02:37,860 [wrapper] cleanup supervisor_pilot 1523147 1523142
[2025-11-27 01:02:37] 2025-11-27 00:02:37,863 [wrapper] Test setup, not cleaning
[2025-11-27 01:02:37] 2025-11-27 00:02:37,865 [wrapper] apfmon messages muted
[2025-11-27 01:02:37] 2025-11-27 00:02:37,868 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:02:37] 2025-11-27 00:02:37,870 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:02:37]  *** Error codes and diagnostics ***
[2025-11-27 01:02:37]     "exeErrorCode": 65,
[2025-11-27 01:02:37]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 01:02:37]     "pilotErrorCode": 1305,
[2025-11-27 01:02:37]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 01:02:37]  *** Listing of results directory ***
[2025-11-27 01:02:37] total 405980
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc    576529 Nov 26 02:44 pilot3.tar.gz
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc      5112 Nov 26 03:26 queuedata.json
[2025-11-27 01:02:37] -rwx------ 1 boinc boinc     36292 Nov 26 03:29 runpilot2-wrapper.sh
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc       100 Nov 27 00:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:02:37] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 00:58 run_atlas
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc       105 Nov 27 00:58 job.xml
[2025-11-27 01:02:37] -rw-r--r-- 2 boinc boinc 411531782 Nov 27 00:58 EVNT.47483658._002381.pool.root.1
[2025-11-27 01:02:37] -rw-r--r-- 2 boinc boinc    590111 Nov 27 00:58 input.tar.gz
[2025-11-27 01:02:37] -rw-r--r-- 2 boinc boinc     15847 Nov 27 00:58 start_atlas.sh
[2025-11-27 01:02:37] drwxrwx--x 2 boinc boinc      4096 Nov 27 00:58 shared
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc         0 Nov 27 00:58 boinc_setup_complete
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc      6196 Nov 27 00:58 init_data.xml
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc         0 Nov 27 00:58 boinc_lockfile
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc      2784 Nov 27 00:58 pandaJob.out
[2025-11-27 01:02:37] -rw------- 1 boinc boinc    991538 Nov 27 00:58 agis_schedconf.cvmfs.json
[2025-11-27 01:02:37] -rw------- 1 boinc boinc   1516240 Nov 27 00:58 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:02:37] drwx------ 5 boinc boinc      4096 Nov 27 00:58 pilot3
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc       523 Nov 27 00:59 boinc_task_state.xml
[2025-11-27 01:02:37] -rw------- 1 boinc boinc       954 Nov 27 00:59 memory_monitor_summary.json
[2025-11-27 01:02:37] -rw------- 1 boinc boinc     55945 Nov 27 00:59 log.47556161._003636.job.log.tgz.1
[2025-11-27 01:02:37] -rw------- 1 boinc boinc        95 Nov 27 01:01 pilot_heartbeat.json
[2025-11-27 01:02:37] -rw------- 1 boinc boinc      8397 Nov 27 01:01 heartbeat.json
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc      8192 Nov 27 01:02 boinc_mmap_file
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc        23 Nov 27 01:02 wrapper_checkpoint.txt
[2025-11-27 01:02:37] -rw------- 1 boinc boinc      4752 Nov 27 01:02 pilotlog.txt
[2025-11-27 01:02:37] -rw------- 1 boinc boinc     92764 Nov 27 01:02 log.47556161._003636.job.log.1
[2025-11-27 01:02:37] -rw------- 1 boinc boinc       186 Nov 27 01:02 output.list
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc       620 Nov 27 01:02 runtime_log
[2025-11-27 01:02:37] -rw------- 1 boinc boinc    163840 Nov 27 01:02 result.tar.gz
[2025-11-27 01:02:37] -rw------- 1 boinc boinc       649 Nov 27 01:02 yXcMDm4SKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyjMKDm7AmCFm.diag
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc      8744 Nov 27 01:02 runtime_log.err
[2025-11-27 01:02:37] -rw-r--r-- 1 boinc boinc      8723 Nov 27 01:02 stderr.txt
[2025-11-27 01:02:37] No HITS result produced
[2025-11-27 01:02:37]  *** Contents of shared directory: ***
[2025-11-27 01:02:37] total 402648
[2025-11-27 01:02:37] -rw-r--r-- 2 boinc boinc 411531782 Nov 27 00:58 ATLAS.root_0
[2025-11-27 01:02:37] -rw-r--r-- 2 boinc boinc    590111 Nov 27 00:58 input.tar.gz
[2025-11-27 01:02:37] -rw-r--r-- 2 boinc boinc     15847 Nov 27 00:58 start_atlas.sh
[2025-11-27 01:02:37] -rw------- 1 boinc boinc    163840 Nov 27 01:02 result.tar.gz
01:02:39 (1519411): run_atlas exited; CPU time 30.207574
01:02:39 (1519411): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN