Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:25:55 (16788): wrapper (7.7.26015): starting
18:25:55 (16788): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:25:55] Arguments: --nthreads 8
[2025-11-26 18:25:55] Threads: 8
[2025-11-26 18:25:55] Checking for CVMFS
[2025-11-26 18:25:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:25:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:25:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:25:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:25:56] 2.13.3.0 11502 30662 326888 153340 3 333 23365993 32935936 60531 16776704 0 299629547 99.632 281695173 36639 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 18:25:56] CVMFS is ok
[2025-11-26 18:25:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:25:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:25:56] Further information can be found at the LHC@home message board.
[2025-11-26 18:25:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:25:56] Checking for apptainer binary...
[2025-11-26 18:25:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:25:56] Running /usr/bin/apptainer --version
[2025-11-26 18:25:56] apptainer version 1.4.4-1.el9
[2025-11-26 18:25:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:25:56] c7-2-15.aglt2.org
[2025-11-26 18:25:56] apptainer works
[2025-11-26 18:25:56] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:25:56] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:25:56] Starting ATLAS job with PandaID=6897881054
[2025-11-26 18:25:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:22:32]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:22:32] 2025-11-27 10:21:33,133 | INFO     | monitor loop #2140: job 0:6897881054 is in state 'finished'
[2025-11-27 05:22:32] 2025-11-27 10:21:33,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,026 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:22:32] 2025-11-27 10:21:34,031 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3268.3640729166655
[2025-11-27 05:22:32] 2025-11-27 10:21:34,045 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6897881054/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,046 | INFO     | extracted standard info from prmon json
[2025-11-27 05:22:32] 2025-11-27 10:21:34,046 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:22:32] 2025-11-27 10:21:34,046 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:22:32] 2025-11-27 10:21:34,063 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:22:32] 2025-11-27 10:21:34,069 | INFO     | sum of square deviations: 82821795196.08614
[2025-11-27 05:22:32] 2025-11-27 10:21:34,085 | INFO     | sum of deviations: 1171362598782.175
[2025-11-27 05:22:32] 2025-11-27 10:21:34,085 | INFO     | mean x: 1764219217.347826
[2025-11-27 05:22:32] 2025-11-27 10:21:34,086 | INFO     | mean y: 2923162.3385093166
[2025-11-27 05:22:32] 2025-11-27 10:21:34,086 | INFO     | intersect: -24948726368.57702
[2025-11-27 05:22:32] 2025-11-27 10:21:34,086 | INFO     | chi2: 4.353552129403237
[2025-11-27 05:22:32] 2025-11-27 10:21:34,087 | INFO     | sum of square deviations: 80907860717.46475
[2025-11-27 05:22:32] 2025-11-27 10:21:34,103 | INFO     | sum of deviations: 1347594739637.4893
[2025-11-27 05:22:32] 2025-11-27 10:21:34,103 | INFO     | mean x: 1764219064.85446
[2025-11-27 05:22:32] 2025-11-27 10:21:34,103 | INFO     | mean y: 2937191.2848200314
[2025-11-27 05:22:32] 2025-11-27 10:21:34,103 | INFO     | intersect: -29381751889.39983
[2025-11-27 05:22:32] 2025-11-27 10:21:34,104 | INFO     | chi2: 2.062127402294685
[2025-11-27 05:22:32] 2025-11-27 10:21:34,104 | INFO     | current chi2=2.062127402294685 (change=52.63345100734212 %)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,108 | INFO     | sum of square deviations: 79023608870.00606
[2025-11-27 05:22:32] 2025-11-27 10:21:34,127 | INFO     | sum of deviations: 1334311930637.493
[2025-11-27 05:22:32] 2025-11-27 10:21:34,127 | INFO     | mean x: 1764218912.3596215
[2025-11-27 05:22:32] 2025-11-27 10:21:34,127 | INFO     | mean y: 2936109.050473186
[2025-11-27 05:22:32] 2025-11-27 10:21:34,127 | INFO     | intersect: -29785862158.693893
[2025-11-27 05:22:32] 2025-11-27 10:21:34,128 | INFO     | chi2: 2.0189582380457867
[2025-11-27 05:22:32] 2025-11-27 10:21:34,128 | INFO     | current chi2=2.0189582380457867 (change=2.093428572883551 %)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,128 | INFO     | right removable region: 633
[2025-11-27 05:22:32] 2025-11-27 10:21:34,128 | INFO     | sum of square deviations: 80907527657.46475
[2025-11-27 05:22:32] 2025-11-27 10:21:34,136 | INFO     | sum of deviations: 1013492395189.5315
[2025-11-27 05:22:32] 2025-11-27 10:21:34,137 | INFO     | mean x: 1764219369.85446
[2025-11-27 05:22:32] 2025-11-27 10:21:34,137 | INFO     | mean y: 2935708.3928012517
[2025-11-27 05:22:32] 2025-11-27 10:21:34,137 | INFO     | intersect: -22096650900.698135
[2025-11-27 05:22:32] 2025-11-27 10:21:34,137 | INFO     | chi2: 2.4767462983276043
[2025-11-27 05:22:32] 2025-11-27 10:21:34,137 | INFO     | current chi2=2.4767462983276043 (change=43.10975900345761 %)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,139 | INFO     | sum of square deviations: 79022981606.28542
[2025-11-27 05:22:32] 2025-11-27 10:21:34,154 | INFO     | sum of deviations: 965509762100.673
[2025-11-27 05:22:32] 2025-11-27 10:21:34,155 | INFO     | mean x: 1764219522.3611987
[2025-11-27 05:22:32] 2025-11-27 10:21:34,155 | INFO     | mean y: 2939590.376971609
[2025-11-27 05:22:32] 2025-11-27 10:21:34,155 | INFO     | intersect: -21552450205.15106
[2025-11-27 05:22:32] 2025-11-27 10:21:34,155 | INFO     | chi2: 2.439574999732055
[2025-11-27 05:22:32] 2025-11-27 10:21:34,159 | INFO     | current chi2=2.439574999732055 (change=1.5008117149765794 %)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,160 | INFO     | left removable region: 20
[2025-11-27 05:22:32] 2025-11-27 10:21:34,161 | INFO     | sum of square deviations: 71427855945.23308
[2025-11-27 05:22:32] 2025-11-27 10:21:34,176 | INFO     | sum of deviations: 1056196486273.3572
[2025-11-27 05:22:32] 2025-11-27 10:21:34,177 | INFO     | mean x: 1764219491.8874388
[2025-11-27 05:22:32] 2025-11-27 10:21:34,177 | INFO     | mean y: 2958341.903752039
[2025-11-27 05:22:32] 2025-11-27 10:21:34,177 | INFO     | intersect: -26084376965.69954
[2025-11-27 05:22:32] 2025-11-27 10:21:34,178 | INFO     | chi2: 0.07914974928420644
[2025-11-27 05:22:32] 2025-11-27 10:21:34,178 | INFO     | current memory leak: 14.79 B/s (using 613 data points, chi2=0.08)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,179 | INFO     | could have reported an average CPU frequency of 3294 MHz (25 samples)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,179 | INFO     | ..............................
[2025-11-27 05:22:32] 2025-11-27 10:21:34,179 | INFO     | . Timing measurements:
[2025-11-27 05:22:32] 2025-11-27 10:21:34,179 | INFO     | . get job = 0 s
[2025-11-27 05:22:32] 2025-11-27 10:21:34,179 | INFO     | . initial setup = 2 s
[2025-11-27 05:22:32] 2025-11-27 10:21:34,179 | INFO     | . payload setup = 9 s
[2025-11-27 05:22:32] 2025-11-27 10:21:34,179 | INFO     | . stage-in = 0 s
[2025-11-27 05:22:32] 2025-11-27 10:21:34,179 | INFO     | . payload execution = 39280 s
[2025-11-27 05:22:32] 2025-11-27 10:21:34,179 | INFO     | . stage-out = 3 s
[2025-11-27 05:22:32] 2025-11-27 10:21:34,179 | INFO     | . log creation = 0 s
[2025-11-27 05:22:32] 2025-11-27 10:21:34,179 | INFO     | ..............................
[2025-11-27 05:22:32] 2025-11-27 10:21:34,184 | INFO     | time since job start (39323s) is within the limit (172800.0s)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,282 | INFO     | 
[2025-11-27 05:22:32] 2025-11-27 10:21:34,283 | INFO     | job summary report
[2025-11-27 05:22:32] 2025-11-27 10:21:34,283 | INFO     | --------------------------------------------------
[2025-11-27 05:22:32] 2025-11-27 10:21:34,283 | INFO     | PanDA job id: 6897881054
[2025-11-27 05:22:32] 2025-11-27 10:21:34,283 | INFO     | task id: 47556173
[2025-11-27 05:22:32] 2025-11-27 10:21:34,283 | INFO     | errors: (none)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,283 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:22:32] 2025-11-27 10:21:34,283 | INFO     | pilot state: finished 
[2025-11-27 05:22:32] 2025-11-27 10:21:34,283 | INFO     | transexitcode: 0
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | exeerrorcode: 0
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | exeerrordiag: 
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | exitcode: 0
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | exitmsg: OK
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | cpuconsumptiontime: 196224 s
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | nevents: 1000
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | neventsw: 0
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | pid: 31652
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | pgrp: 31652
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | corecount: 8
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | event service: False
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | sizes: {0: 2284262, 8: 2284524, 11: 2284552, 39293: 2327617, 39294: 2327616, 39297: 2336666, 39298: 2336850, 39305: 2337160}
[2025-11-27 05:22:32] 2025-11-27 10:21:34,284 | INFO     | --------------------------------------------------
[2025-11-27 05:22:32] 2025-11-27 10:21:34,285 | INFO     | 
[2025-11-27 05:22:32] 2025-11-27 10:21:34,285 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-27 05:22:32] 2025-11-27 10:21:34,304 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,304 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,304 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,304 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,304 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,304 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,304 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:22:32] 2025-11-27 10:21:34,305 | INFO     | job 6897881054 has completed (purged errors)
[2025-11-27 05:22:32] 2025-11-27 10:21:34,306 | INFO     | overall cleanup function is called
[2025-11-27 05:22:32] 2025-11-27 10:21:35,320 | INFO     | --- collectZombieJob: --- 10, [31652]
[2025-11-27 05:22:32] 2025-11-27 10:21:35,321 | INFO     | zombie collector waiting for pid 31652
[2025-11-27 05:22:32] 2025-11-27 10:21:35,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:22:32] 2025-11-27 10:21:35,321 | INFO     | collected zombie processes
[2025-11-27 05:22:32] 2025-11-27 10:21:35,321 | INFO     | will attempt to kill all subprocesses of pid=31652
[2025-11-27 05:22:32] 2025-11-27 10:21:36,015 | INFO     | process IDs to be killed: [31652] (in reverse order)
[2025-11-27 05:22:32] 2025-11-27 10:21:36,250 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:22:32] 2025-11-27 10:21:36,250 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:22:32] 2025-11-27 10:21:36,282 | INFO     | did not find any defunct processes belonging to 31652
[2025-11-27 05:22:32] 2025-11-27 10:21:36,323 | INFO     | did not find any defunct processes belonging to 31652
[2025-11-27 05:22:32] 2025-11-27 10:21:36,324 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:22:32] 2025-11-27 10:21:36,324 | INFO     | ready for new job
[2025-11-27 05:22:32] 2025-11-27 10:21:36,324 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:22:32] 2025-11-27 10:21:36,327 | INFO     | ***************************************
[2025-11-27 05:22:32] 2025-11-27 10:21:36,327 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:22:32] 2025-11-27 10:21:36,327 | INFO     | ***************************************
[2025-11-27 05:22:32] 2025-11-27 10:21:36,327 | INFO     | 
[2025-11-27 05:22:32] 2025-11-27 10:21:36,332 | INFO     | architecture information:
[2025-11-27 05:22:32] 2025-11-27 10:21:36,332 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:22:32] 2025-11-27 10:21:36,348 | INFO     | cat /etc/os-release:
[2025-11-27 05:22:32] NAME="CentOS Linux"
[2025-11-27 05:22:32] VERSION="7 (Core)"
[2025-11-27 05:22:32] ID="centos"
[2025-11-27 05:22:32] ID_LIKE="rhel fedora"
[2025-11-27 05:22:32] VERSION_ID="7"
[2025-11-27 05:22:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:22:32] ANSI_COLOR="0;31"
[2025-11-27 05:22:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:22:32] HOME_URL="https://www.centos.org/"
[2025-11-27 05:22:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:22:32] 
[2025-11-27 05:22:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:22:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:22:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:22:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:22:32] 
[2025-11-27 05:22:32] 2025-11-27 10:21:36,348 | INFO     | ***************************************
[2025-11-27 05:22:32] 2025-11-27 10:21:36,852 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-27 05:22:32] 2025-11-27 10:21:36,871 | INFO     | sufficient remaining disk space (67943530496 B)
[2025-11-27 05:22:32] 2025-11-27 10:21:36,871 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:22:32] 2025-11-27 10:21:36,872 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:22:32] 2025-11-27 10:21:36,872 | INFO     | update_server=False
[2025-11-27 05:22:32] 2025-11-27 10:21:36,872 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:22:32] 2025-11-27 10:21:36,872 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:22:32] 2025-11-27 10:21:36,872 | INFO     | aborting loop
[2025-11-27 05:22:32] 2025-11-27 10:21:37,015 | INFO     | all payload control threads have been joined
[2025-11-27 05:22:32] 2025-11-27 10:21:37,037 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:22:32] 2025-11-27 10:21:37,090 | INFO     | all job control threads have been joined
[2025-11-27 05:22:32] 2025-11-27 10:21:37,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:22:32] 2025-11-27 10:21:37,860 | INFO     | all data control threads have been joined
[2025-11-27 05:22:32] 2025-11-27 10:21:37,873 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:37,874 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:38,022 | INFO     | [payload] control thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:38,073 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:38,098 | INFO     | [job] control thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:38,191 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:38,324 | INFO     | [job] validate thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:38,443 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:38,480 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:38,609 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:38,653 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:38,866 | INFO     | [data] control thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:39,044 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:39,095 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:39,299 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:22:32] 2025-11-27 10:21:40,308 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:21:41,317 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:22:32] 2025-11-27 10:22:08,082 | INFO     | PID=20740 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 05:22:32] 2025-11-27 10:22:08,082 | INFO     | .. there are 88 such processes running
[2025-11-27 05:22:32] 2025-11-27 10:22:08,083 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:22:32] 2025-11-27 10:22:08,083 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:22:32] 2025-11-27 10:22:08,083 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:22:32] 2025-11-27 10:22:24,572 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:22:32] 2025-11-27 10:22:26,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140543593469760)>', '<ExcThread(monitor, started 140543233337088)>']
[2025-11-27 05:22:32] 2025-11-27 10:22:27,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:22:32] 2025-11-27 10:22:27,226 | INFO     | [monitor] control thread has ended
[2025-11-27 05:22:32] 2025-11-27 10:22:31,678 | INFO     | all workflow threads have been joined
[2025-11-27 05:22:32] 2025-11-27 10:22:31,679 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:22:32] 2025-11-27 10:22:31,679 | INFO     | traces error code: 0
[2025-11-27 05:22:32] 2025-11-27 10:22:31,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:22:32] 2025-11-27 10:22:31,814 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:22:32] 2025-11-27 10:22:31,817 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:22:32] 2025-11-27 10:22:31,827 [wrapper] pilotpid: 20740
[2025-11-27 05:22:32] 2025-11-27 10:22:31,837 [wrapper] Pilot exit status: 0
[2025-11-27 05:22:32] 2025-11-27 10:22:31,892 [wrapper] pandaids: 6897881054
[2025-11-27 05:22:32] 2025-11-27 10:22:32,066 [wrapper] cleanup supervisor_pilot  952817 20741
[2025-11-27 05:22:32] 2025-11-27 10:22:32,075 [wrapper] Test setup, not cleaning
[2025-11-27 05:22:32] 2025-11-27 10:22:32,081 [wrapper] apfmon messages muted
[2025-11-27 05:22:32] 2025-11-27 10:22:32,083 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:22:32] 2025-11-27 10:22:32,085 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:22:32]  *** Error codes and diagnostics ***
[2025-11-27 05:22:32]     "exeErrorCode": 0,
[2025-11-27 05:22:32]     "exeErrorDiag": "",
[2025-11-27 05:22:32]     "pilotErrorCode": 0,
[2025-11-27 05:22:32]     "pilotErrorDiag": "",
[2025-11-27 05:22:32]  *** Listing of results directory ***
[2025-11-27 05:22:32] total 1312880
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 20:56 queuedata.json
[2025-11-27 05:22:32] -rwx------. 1 boincer umatlas     36292 Nov 25 20:58 runpilot2-wrapper.sh
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas       100 Nov 26 18:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:22:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 18:25 run_atlas
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas       105 Nov 26 18:25 job.xml
[2025-11-27 05:22:32] -rw-r--r--. 2 boincer umatlas 409551969 Nov 26 18:25 EVNT.47483658._003139.pool.root.1
[2025-11-27 05:22:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:25 start_atlas.sh
[2025-11-27 05:22:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 18:25 shared
[2025-11-27 05:22:32] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 18:25 input.tar.gz
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas         0 Nov 26 18:25 boinc_lockfile
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 18:25 pandaJob.out
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas        57 Nov 26 18:25 setup.sh.local
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas    991538 Nov 26 18:26 agis_schedconf.cvmfs.json
[2025-11-27 05:22:32] drwx------. 5 boincer umatlas      4096 Nov 26 18:26 pilot3
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas       533 Nov 27 05:13 boinc_task_state.xml
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 05:18 init_data.xml
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas 917863377 Nov 27 05:20 HITS.47556173._000984.pool.root.1
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas      1071 Nov 27 05:21 memory_monitor_summary.json
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas   1516240 Nov 27 05:21 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas   1847816 Nov 27 05:21 log.47556173._000984.job.log.tgz.1
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas      8616 Nov 27 05:21 heartbeat.json
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas        95 Nov 27 05:22 pilot_heartbeat.json
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 05:22 boinc_mmap_file
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas        29 Nov 27 05:22 wrapper_checkpoint.txt
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas      4822 Nov 27 05:22 pilotlog.txt
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas   4676472 Nov 27 05:22 log.47556173._000984.job.log.1
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas       353 Nov 27 05:22 output.list
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas       620 Nov 27 05:22 runtime_log
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas   6543360 Nov 27 05:22 result.tar.gz
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas       663 Nov 27 05:22 VvwLDmAzJi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtgMKDmhchBIo.diag
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 05:22 runtime_log.err
[2025-11-27 05:22:32] -rw-r--r--. 1 boincer umatlas     21316 Nov 27 05:22 stderr.txt
[2025-11-27 05:22:32] HITS file was successfully produced:
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas 917863377 Nov 27 05:20 shared/HITS.pool.root.1
[2025-11-27 05:22:32]  *** Contents of shared directory: ***
[2025-11-27 05:22:32] total 1303304
[2025-11-27 05:22:32] -rw-r--r--. 2 boincer umatlas 409551969 Nov 26 18:25 ATLAS.root_0
[2025-11-27 05:22:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:25 start_atlas.sh
[2025-11-27 05:22:32] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 18:25 input.tar.gz
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas 917863377 Nov 27 05:20 HITS.pool.root.1
[2025-11-27 05:22:32] -rw-------. 1 boincer umatlas   6543360 Nov 27 05:22 result.tar.gz
05:22:33 (16788): run_atlas exited; CPU time 197096.724931
05:22:33 (16788): called boinc_finish(0)

</stderr_txt>
]]>

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