Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:19:55 (384663): wrapper (7.7.26015): starting
18:19:55 (384663): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:19:55] Arguments: --nthreads 8
[2025-11-26 18:19:55] Threads: 8
[2025-11-26 18:19:55] Checking for CVMFS
[2025-11-26 18:19:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:19:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:19:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:19:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:19:57] 2.13.2.0 7884 37301 206044 153340 0 128 23616939 40960000 28129 16776704 0 385437035 99.728 274962317 47184 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 18:19:57] CVMFS is ok
[2025-11-26 18:19:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:19:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:19:57] Further information can be found at the LHC@home message board.
[2025-11-26 18:19:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:19:57] Checking for apptainer binary...
[2025-11-26 18:19:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:19:57] Running /usr/bin/apptainer --version
[2025-11-26 18:19:57] apptainer version 1.4.4-1.el9
[2025-11-26 18:19:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:19:58] c-208-38.aglt2.org
[2025-11-26 18:19:58] apptainer works
[2025-11-26 18:19:58] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:19:58] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:19:58] Starting ATLAS job with PandaID=6897881263
[2025-11-26 18:19:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:34:03]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:34:23] 2025-11-27 18:32:39,743 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:34:23] 2025-11-27 18:32:41,392 | INFO     | time since job start (69107s) is within the limit (172800.0s)
[2025-11-27 13:34:23] 2025-11-27 18:32:42,248 | INFO     | monitor loop #4234: job 0:6897881263 is in state 'finished'
[2025-11-27 13:34:23] 2025-11-27 18:32:42,252 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:34:23] 2025-11-27 18:32:43,399 | INFO     | time since job start (69109s) is within the limit (172800.0s)
[2025-11-27 13:34:23] 2025-11-27 18:32:44,758 | INFO     | monitor loop #4235: job 0:6897881263 is in state 'finished'
[2025-11-27 13:34:23] 2025-11-27 18:32:44,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:34:23] 2025-11-27 18:32:45,409 | INFO     | time since job start (69111s) is within the limit (172800.0s)
[2025-11-27 13:34:23] 2025-11-27 18:32:47,273 | INFO     | monitor loop #4236: job 0:6897881263 is in state 'finished'
[2025-11-27 13:34:23] 2025-11-27 18:32:47,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:34:23] 2025-11-27 18:32:47,415 | INFO     | time since job start (69113s) is within the limit (172800.0s)
[2025-11-27 13:34:23] 2025-11-27 18:32:49,422 | INFO     | time since job start (69115s) is within the limit (172800.0s)
[2025-11-27 13:34:23] 2025-11-27 18:32:49,782 | INFO     | monitor loop #4237: job 0:6897881263 is in state 'finished'
[2025-11-27 13:34:23] 2025-11-27 18:32:49,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:34:23] 2025-11-27 18:32:51,429 | INFO     | time since job start (69117s) is within the limit (172800.0s)
[2025-11-27 13:34:23] 2025-11-27 18:32:52,287 | INFO     | monitor loop #4238: job 0:6897881263 is in state 'finished'
[2025-11-27 13:34:23] 2025-11-27 18:32:52,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:34:23] 2025-11-27 18:32:52,972 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 13:34:23] 2025-11-27 18:32:52,988 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3672.1816484375004
[2025-11-27 13:34:23] 2025-11-27 18:32:53,013 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897881263/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:34:23] 2025-11-27 18:32:53,017 | INFO     | extracted standard info from prmon json
[2025-11-27 13:34:23] 2025-11-27 18:32:53,018 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:34:23] 2025-11-27 18:32:53,018 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:34:23] 2025-11-27 18:32:53,035 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:34:23] 2025-11-27 18:32:53,036 | INFO     | sum of square deviations: 448601838012.5846
[2025-11-27 13:34:23] 2025-11-27 18:32:53,067 | INFO     | sum of deviations: 4088469653861.154
[2025-11-27 13:34:23] 2025-11-27 18:32:53,067 | INFO     | mean x: 1764233849.7020335
[2025-11-27 13:34:23] 2025-11-27 18:32:53,067 | INFO     | mean y: 2942591.454465075
[2025-11-27 13:34:23] 2025-11-27 18:32:53,067 | INFO     | intersect: -16075940608.794611
[2025-11-27 13:34:23] 2025-11-27 18:32:53,068 | INFO     | chi2: 23.31920032688949
[2025-11-27 13:34:23] 2025-11-27 18:32:53,068 | INFO     | sum of square deviations: 442679682986.2559
[2025-11-27 13:34:23] 2025-11-27 18:32:53,099 | INFO     | sum of deviations: 4492525702438.5625
[2025-11-27 13:34:23] 2025-11-27 18:32:53,100 | INFO     | mean x: 1764233697.2184725
[2025-11-27 13:34:23] 2025-11-27 18:32:53,100 | INFO     | mean y: 2952991.8188277087
[2025-11-27 13:34:23] 2025-11-27 18:32:53,100 | INFO     | intersect: -17901336575.74255
[2025-11-27 13:34:23] 2025-11-27 18:32:53,100 | INFO     | chi2: 19.57234184825014
[2025-11-27 13:34:23] 2025-11-27 18:32:53,100 | INFO     | current chi2=19.57234184825014 (change=16.067697117035475 %)
[2025-11-27 13:34:23] 2025-11-27 18:32:53,100 | INFO     | right removable region: 1125
[2025-11-27 13:34:23] 2025-11-27 18:32:53,101 | INFO     | sum of square deviations: 442677128916.25574
[2025-11-27 13:34:23] 2025-11-27 18:32:53,132 | INFO     | sum of deviations: 3629480062723.3545
[2025-11-27 13:34:23] 2025-11-27 18:32:53,133 | INFO     | mean x: 1764234002.2184725
[2025-11-27 13:34:23] 2025-11-27 18:32:53,133 | INFO     | mean y: 2954404.953818828
[2025-11-27 13:34:23] 2025-11-27 18:32:53,133 | INFO     | intersect: -14461881744.830471
[2025-11-27 13:34:23] 2025-11-27 18:32:53,137 | INFO     | chi2: 19.403892574304887
[2025-11-27 13:34:23] 2025-11-27 18:32:53,138 | INFO     | current chi2=19.403892574304887 (change=16.79006011226655 %)
[2025-11-27 13:34:23] 2025-11-27 18:32:53,138 | INFO     | left removable region: 10
[2025-11-27 13:34:23] 2025-11-27 18:32:53,138 | INFO     | sum of square deviations: 429829859562.1584
[2025-11-27 13:34:23] 2025-11-27 18:32:53,166 | INFO     | sum of deviations: 3720735187242.1924
[2025-11-27 13:34:23] 2025-11-27 18:32:53,166 | INFO     | mean x: 1764233971.755157
[2025-11-27 13:34:23] 2025-11-27 18:32:53,166 | INFO     | mean y: 2976852.183856502
[2025-11-27 13:34:23] 2025-11-27 18:32:53,166 | INFO     | intersect: -15268757465.957888
[2025-11-27 13:34:23] 2025-11-27 18:32:53,167 | INFO     | chi2: 12.388867761486244
[2025-11-27 13:34:23] 2025-11-27 18:32:53,167 | INFO     | current memory leak: 8.66 B/s (using 1115 data points, chi2=12.39)
[2025-11-27 13:34:23] 2025-11-27 18:32:53,172 | INFO     | could have reported an average CPU frequency of 3732 MHz (41 samples)
[2025-11-27 13:34:23] 2025-11-27 18:32:53,172 | INFO     | ..............................
[2025-11-27 13:34:23] 2025-11-27 18:32:53,173 | INFO     | . Timing measurements:
[2025-11-27 13:34:23] 2025-11-27 18:32:53,173 | INFO     | . get job = 0 s
[2025-11-27 13:34:23] 2025-11-27 18:32:53,173 | INFO     | . initial setup = 3 s
[2025-11-27 13:34:23] 2025-11-27 18:32:53,173 | INFO     | . payload setup = 40 s
[2025-11-27 13:34:23] 2025-11-27 18:32:53,173 | INFO     | . stage-in = 0 s
[2025-11-27 13:34:23] 2025-11-27 18:32:53,173 | INFO     | . payload execution = 68969 s
[2025-11-27 13:34:23] 2025-11-27 18:32:53,173 | INFO     | . stage-out = 7 s
[2025-11-27 13:34:23] 2025-11-27 18:32:53,173 | INFO     | . log creation = 2 s
[2025-11-27 13:34:23] 2025-11-27 18:32:53,173 | INFO     | ..............................
[2025-11-27 13:34:23] 2025-11-27 18:32:53,283 | INFO     | 
[2025-11-27 13:34:23] 2025-11-27 18:32:53,286 | INFO     | job summary report
[2025-11-27 13:34:23] 2025-11-27 18:32:53,286 | INFO     | --------------------------------------------------
[2025-11-27 13:34:23] 2025-11-27 18:32:53,286 | INFO     | PanDA job id: 6897881263
[2025-11-27 13:34:23] 2025-11-27 18:32:53,286 | INFO     | task id: 47556161
[2025-11-27 13:34:23] 2025-11-27 18:32:53,286 | INFO     | errors: (none)
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | pilot state: finished 
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | transexitcode: 0
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | exeerrorcode: 0
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | exeerrordiag: 
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | exitcode: 0
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | exitmsg: OK
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | cpuconsumptiontime: 150498 s
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | nevents: 1000
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | neventsw: 0
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | pid: 420665
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | pgrp: 420665
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | corecount: 8
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | event service: False
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | sizes: {0: 2284037, 1: 2284292, 12: 2284292, 22: 2284320, 23: 2284610, 33: 2284638, 69015: 2340384, 69024: 2349434, 69056: 2349720}
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | --------------------------------------------------
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | 
[2025-11-27 13:34:23] 2025-11-27 18:32:53,287 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 13:34:23] 2025-11-27 18:32:53,336 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,337 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:34:23] 2025-11-27 18:32:53,338 | INFO     | job 6897881263 has completed (purged errors)
[2025-11-27 13:34:23] 2025-11-27 18:32:53,338 | INFO     | overall cleanup function is called
[2025-11-27 13:34:23] 2025-11-27 18:32:54,363 | INFO     | --- collectZombieJob: --- 10, [420665]
[2025-11-27 13:34:23] 2025-11-27 18:32:54,363 | INFO     | zombie collector waiting for pid 420665
[2025-11-27 13:34:23] 2025-11-27 18:32:54,363 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:34:23] 2025-11-27 18:32:54,364 | INFO     | collected zombie processes
[2025-11-27 13:34:23] 2025-11-27 18:32:54,364 | INFO     | will attempt to kill all subprocesses of pid=420665
[2025-11-27 13:34:23] 2025-11-27 18:32:55,598 | INFO     | process IDs to be killed: [420665] (in reverse order)
[2025-11-27 13:34:23] 2025-11-27 18:32:55,759 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:34:23] 2025-11-27 18:32:55,759 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:34:23] 2025-11-27 18:32:55,793 | INFO     | did not find any defunct processes belonging to 420665
[2025-11-27 13:34:23] 2025-11-27 18:32:55,819 | INFO     | did not find any defunct processes belonging to 420665
[2025-11-27 13:34:23] 2025-11-27 18:32:55,825 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:34:23] 2025-11-27 18:32:55,825 | INFO     | ready for new job
[2025-11-27 13:34:23] 2025-11-27 18:32:55,825 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:34:23] 2025-11-27 18:32:55,831 | INFO     | ***************************************
[2025-11-27 13:34:23] 2025-11-27 18:32:55,831 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:34:23] 2025-11-27 18:32:55,831 | INFO     | ***************************************
[2025-11-27 13:34:23] 2025-11-27 18:32:55,831 | INFO     | 
[2025-11-27 13:34:23] 2025-11-27 18:32:55,840 | INFO     | architecture information:
[2025-11-27 13:34:23] 2025-11-27 18:32:55,843 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:34:23] 2025-11-27 18:32:56,001 | INFO     | cat /etc/os-release:
[2025-11-27 13:34:23] NAME="CentOS Linux"
[2025-11-27 13:34:23] VERSION="7 (Core)"
[2025-11-27 13:34:23] ID="centos"
[2025-11-27 13:34:23] ID_LIKE="rhel fedora"
[2025-11-27 13:34:23] VERSION_ID="7"
[2025-11-27 13:34:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:34:23] ANSI_COLOR="0;31"
[2025-11-27 13:34:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:34:23] HOME_URL="https://www.centos.org/"
[2025-11-27 13:34:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:34:23] 
[2025-11-27 13:34:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:34:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:34:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:34:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:34:23] 
[2025-11-27 13:34:23] 2025-11-27 18:32:56,002 | INFO     | ***************************************
[2025-11-27 13:34:23] 2025-11-27 18:32:56,505 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 13:34:23] 2025-11-27 18:32:56,537 | INFO     | sufficient remaining disk space (163325149184 B)
[2025-11-27 13:34:23] 2025-11-27 18:32:56,537 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:34:23] 2025-11-27 18:32:56,537 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:34:23] 2025-11-27 18:32:56,537 | INFO     | update_server=False
[2025-11-27 13:34:23] 2025-11-27 18:32:56,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:34:23] 2025-11-27 18:32:56,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:34:23] 2025-11-27 18:32:56,538 | INFO     | aborting loop
[2025-11-27 13:34:23] 2025-11-27 18:32:56,539 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:34:23] 2025-11-27 18:32:56,878 | INFO     | all data control threads have been joined
[2025-11-27 13:34:23] 2025-11-27 18:32:57,054 | INFO     | all job control threads have been joined
[2025-11-27 13:34:23] 2025-11-27 18:32:57,543 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:57,545 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:57,599 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:57,725 | INFO     | all payload control threads have been joined
[2025-11-27 13:34:23] 2025-11-27 18:32:57,763 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:57,770 | INFO     | [job] validate thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:57,904 | INFO     | [data] control thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:58,010 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:58,060 | INFO     | [job] control thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:58,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:34:23] 2025-11-27 18:32:58,322 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:58,445 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:34:23] 2025-11-27 18:32:58,547 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:58,631 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:58,731 | INFO     | [payload] control thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:58,788 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:58,807 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:32:59,306 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:33:02,455 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:34:23] 2025-11-27 18:33:25,985 | INFO     | PID=396992 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 13:34:23] 2025-11-27 18:33:26,014 | INFO     | .. there are 31 such processes running
[2025-11-27 13:34:23] 2025-11-27 18:33:26,015 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:34:23] 2025-11-27 18:33:26,015 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:34:23] 2025-11-27 18:33:26,015 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:34:23] 2025-11-27 18:33:54,339 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:34:23] 2025-11-27 18:33:54,802 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139971564115776)>', '<ExcThread(monitor, started 139971222558464)>']
[2025-11-27 13:34:23] 2025-11-27 18:33:55,251 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:34:23] 2025-11-27 18:33:55,251 | INFO     | [monitor] control thread has ended
[2025-11-27 13:34:23] 2025-11-27 18:33:59,832 | INFO     | all workflow threads have been joined
[2025-11-27 13:34:23] 2025-11-27 18:33:59,832 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:34:23] 2025-11-27 18:33:59,833 | INFO     | traces error code: 0
[2025-11-27 13:34:23] 2025-11-27 18:33:59,833 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:34:23] 2025-11-27 18:34:01,043 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:34:23] 2025-11-27 18:34:01,065 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:34:23] 2025-11-27 18:34:01,114 [wrapper] pilotpid: 396992
[2025-11-27 13:34:23] 2025-11-27 18:34:01,143 [wrapper] Pilot exit status: 0
[2025-11-27 13:34:23] 2025-11-27 18:34:01,341 [wrapper] pandaids: 6897881263
[2025-11-27 13:34:23] 2025-11-27 18:34:01,730 [wrapper] cleanup supervisor_pilot 2791040 396993
[2025-11-27 13:34:23] 2025-11-27 18:34:01,757 [wrapper] Test setup, not cleaning
[2025-11-27 13:34:23] 2025-11-27 18:34:01,804 [wrapper] apfmon messages muted
[2025-11-27 13:34:23] 2025-11-27 18:34:01,851 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:34:23] 2025-11-27 18:34:01,877 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:34:23]  *** Error codes and diagnostics ***
[2025-11-27 13:34:23]     "exeErrorCode": 0,
[2025-11-27 13:34:23]     "exeErrorDiag": "",
[2025-11-27 13:34:23]     "pilotErrorCode": 0,
[2025-11-27 13:34:23]     "pilotErrorDiag": "",
[2025-11-27 13:34:23]  *** Listing of results directory ***
[2025-11-27 13:34:23] total 1318512
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:07 queuedata.json
[2025-11-27 13:34:23] -rwx------. 1 boincer umatlas     36292 Nov 25 21:10 runpilot2-wrapper.sh
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas       100 Nov 26 18:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:34:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 18:19 run_atlas
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas       105 Nov 26 18:19 job.xml
[2025-11-27 13:34:23] -rw-r--r--. 2 boincer umatlas 407652822 Nov 26 18:19 EVNT.47483658._002365.pool.root.1
[2025-11-27 13:34:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:19 start_atlas.sh
[2025-11-27 13:34:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 18:19 shared
[2025-11-27 13:34:23] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 18:19 input.tar.gz
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas         0 Nov 26 18:19 boinc_lockfile
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 18:19 pandaJob.out
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas        57 Nov 26 18:19 setup.sh.local
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas    991538 Nov 26 18:20 agis_schedconf.cvmfs.json
[2025-11-27 13:34:23] drwx------. 5 boincer umatlas      4096 Nov 26 18:20 pilot3
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:04 boinc_task_state.xml
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas 916481582 Nov 27 13:30 HITS.47556161._003478.pool.root.1
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas      7176 Nov 27 13:31 init_data.xml
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas      1076 Nov 27 13:32 memory_monitor_summary.json
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:32 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas   2228188 Nov 27 13:32 log.47556161._003478.job.log.tgz.1
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas      7960 Nov 27 13:32 heartbeat.json
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas        95 Nov 27 13:33 pilot_heartbeat.json
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas      4824 Nov 27 13:33 pilotlog.txt
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas   8825978 Nov 27 13:34 log.47556161._003478.job.log.1
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas       353 Nov 27 13:34 output.list
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:34 runtime_log
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas  11069440 Nov 27 13:34 result.tar.gz
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 13:34 runtime_log.err
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas       666 Nov 27 13:34 HlgKDm79Ji8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOiMKDmgaOmTn.diag
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas        29 Nov 27 13:34 wrapper_checkpoint.txt
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:34 boinc_mmap_file
[2025-11-27 13:34:23] -rw-r--r--. 1 boincer umatlas     21795 Nov 27 13:34 stderr.txt
[2025-11-27 13:34:23] HITS file was successfully produced:
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas 916481582 Nov 27 13:30 shared/HITS.pool.root.1
[2025-11-27 13:34:23]  *** Contents of shared directory: ***
[2025-11-27 13:34:23] total 1304520
[2025-11-27 13:34:23] -rw-r--r--. 2 boincer umatlas 407652822 Nov 26 18:19 ATLAS.root_0
[2025-11-27 13:34:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:19 start_atlas.sh
[2025-11-27 13:34:23] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 18:19 input.tar.gz
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas 916481582 Nov 27 13:30 HITS.pool.root.1
[2025-11-27 13:34:23] -rw-------. 1 boincer umatlas  11069440 Nov 27 13:34 result.tar.gz
13:34:25 (384663): run_atlas exited; CPU time 151339.727110
13:34:25 (384663): called boinc_finish(0)

</stderr_txt>
]]>

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