Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:19:51 (310263): wrapper (7.7.26015): starting
19:19:51 (310263): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:19:51] Arguments: --nthreads 8
[2025-11-26 19:19:51] Threads: 8
[2025-11-26 19:19:51] Checking for CVMFS
[2025-11-26 19:19:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:19:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:19:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:19:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:19:52] 2.13.3.0 9582 30739 231196 153341 0 383 40614180 40960001 72740 16776704 0 392414116 99.724 268520719 48158 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 19:19:52] CVMFS is ok
[2025-11-26 19:19:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:19:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:19:52] Further information can be found at the LHC@home message board.
[2025-11-26 19:19:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:19:52] Checking for apptainer binary...
[2025-11-26 19:19:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:19:52] Running /usr/bin/apptainer --version
[2025-11-26 19:19:52] apptainer version 1.4.4-1.el9
[2025-11-26 19:19:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:20:12] c8-7-4.aglt2.org
[2025-11-26 19:20:12] apptainer works
[2025-11-26 19:20:12] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:20:12] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:20:12] Starting ATLAS job with PandaID=6897372689
[2025-11-26 19:20:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:45:39]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:45:39] 2025-11-27 07:44:26,850 | INFO     | time since job start (26622s) is within the limit (172800.0s)
[2025-11-27 02:45:39] 2025-11-27 07:44:27,630 | INFO     | monitor loop #1555: job 0:6897372689 is in state 'finished'
[2025-11-27 02:45:39] 2025-11-27 07:44:27,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:45:39] 2025-11-27 07:44:28,863 | INFO     | time since job start (26624s) is within the limit (172800.0s)
[2025-11-27 02:45:39] 2025-11-27 07:44:30,139 | INFO     | monitor loop #1556: job 0:6897372689 is in state 'finished'
[2025-11-27 02:45:39] 2025-11-27 07:44:30,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:45:39] 2025-11-27 07:44:32,691 | INFO     | monitor loop #1557: job 0:6897372689 is in state 'finished'
[2025-11-27 02:45:39] 2025-11-27 07:44:32,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:45:39] 2025-11-27 07:44:32,892 | INFO     | PID=317313 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 02:45:39] 2025-11-27 07:44:32,892 | INFO     | .. there are 99 such processes running
[2025-11-27 02:45:39] 2025-11-27 07:44:33,892 | INFO     | time since job start (26629s) is within the limit (172800.0s)
[2025-11-27 02:45:39] 2025-11-27 07:44:35,210 | INFO     | monitor loop #1558: job 0:6897372689 is in state 'finished'
[2025-11-27 02:45:39] 2025-11-27 07:44:35,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:45:39] 2025-11-27 07:44:35,904 | INFO     | time since job start (26631s) is within the limit (172800.0s)
[2025-11-27 02:45:39] 2025-11-27 07:44:37,734 | INFO     | monitor loop #1559: job 0:6897372689 is in state 'finished'
[2025-11-27 02:45:39] 2025-11-27 07:44:37,735 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:45:39] 2025-11-27 07:44:37,930 | INFO     | time since job start (26633s) is within the limit (172800.0s)
[2025-11-27 02:45:39] 2025-11-27 07:44:38,082 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 02:45:39] 2025-11-27 07:44:38,102 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9908281249996
[2025-11-27 02:45:39] 2025-11-27 07:44:38,152 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6897372689/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:45:39] 2025-11-27 07:44:38,156 | INFO     | extracted standard info from prmon json
[2025-11-27 02:45:39] 2025-11-27 07:44:38,156 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:45:39] 2025-11-27 07:44:38,157 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:45:39] 2025-11-27 07:44:38,165 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:45:39] 2025-11-27 07:44:38,165 | INFO     | sum of square deviations: 25524624565.852966
[2025-11-27 02:45:39] 2025-11-27 07:44:38,168 | INFO     | sum of deviations: -311952225229.6759
[2025-11-27 02:45:39] 2025-11-27 07:44:38,168 | INFO     | mean x: 1764216144.6850574
[2025-11-27 02:45:39] 2025-11-27 07:44:38,168 | INFO     | mean y: 2796035.834482759
[2025-11-27 02:45:39] 2025-11-27 07:44:38,168 | INFO     | intersect: 21564372806.5615
[2025-11-27 02:45:39] 2025-11-27 07:44:38,168 | INFO     | chi2: 17.48867741091163
[2025-11-27 02:45:39] 2025-11-27 07:44:38,170 | INFO     | sum of square deviations: 24654794593.990784
[2025-11-27 02:45:39] 2025-11-27 07:44:38,173 | INFO     | sum of deviations: -176470066545.39102
[2025-11-27 02:45:39] 2025-11-27 07:44:38,173 | INFO     | mean x: 1764215992.204651
[2025-11-27 02:45:39] 2025-11-27 07:44:38,173 | INFO     | mean y: 2819798.0953488373
[2025-11-27 02:45:39] 2025-11-27 07:44:38,173 | INFO     | intersect: 12630437211.735449
[2025-11-27 02:45:39] 2025-11-27 07:44:38,173 | INFO     | chi2: 14.172776646070506
[2025-11-27 02:45:39] 2025-11-27 07:44:38,174 | INFO     | current chi2=14.172776646070506 (change=18.96027176287356 %)
[2025-11-27 02:45:39] 2025-11-27 07:44:38,174 | INFO     | right removable region: 429
[2025-11-27 02:45:39] 2025-11-27 07:44:38,174 | INFO     | sum of square deviations: 24654347463.99076
[2025-11-27 02:45:39] 2025-11-27 07:44:38,183 | INFO     | sum of deviations: -411772568448.9209
[2025-11-27 02:45:39] 2025-11-27 07:44:38,184 | INFO     | mean x: 1764216297.204651
[2025-11-27 02:45:39] 2025-11-27 07:44:38,184 | INFO     | mean y: 2813454.7604651162
[2025-11-27 02:45:39] 2025-11-27 07:44:38,184 | INFO     | intersect: 29468443281.728664
[2025-11-27 02:45:39] 2025-11-27 07:44:38,184 | INFO     | chi2: 15.541112240448351
[2025-11-27 02:45:39] 2025-11-27 07:44:38,184 | INFO     | current chi2=15.541112240448351 (change=11.136148976297914 %)
[2025-11-27 02:45:39] 2025-11-27 07:44:38,184 | INFO     | left removable region: 10
[2025-11-27 02:45:39] 2025-11-27 07:44:38,184 | INFO     | sum of square deviations: 22810348266.687363
[2025-11-27 02:45:39] 2025-11-27 07:44:38,190 | INFO     | sum of deviations: -254460250886.7685
[2025-11-27 02:45:39] 2025-11-27 07:44:38,190 | INFO     | mean x: 1764216266.7494032
[2025-11-27 02:45:39] 2025-11-27 07:44:38,191 | INFO     | mean y: 2845947.92601432
[2025-11-27 02:45:39] 2025-11-27 07:44:38,191 | INFO     | intersect: 19683514941.09462
[2025-11-27 02:45:39] 2025-11-27 07:44:38,191 | INFO     | chi2: 11.182232274338308
[2025-11-27 02:45:39] 2025-11-27 07:44:38,191 | INFO     | current memory leak: -11.16 B/s (using 419 data points, chi2=11.18)
[2025-11-27 02:45:39] 2025-11-27 07:44:38,191 | INFO     | could have reported an average CPU frequency of 3799 MHz (18 samples)
[2025-11-27 02:45:39] 2025-11-27 07:44:38,192 | INFO     | ..............................
[2025-11-27 02:45:39] 2025-11-27 07:44:38,192 | INFO     | . Timing measurements:
[2025-11-27 02:45:39] 2025-11-27 07:44:38,192 | INFO     | . get job = 0 s
[2025-11-27 02:45:39] 2025-11-27 07:44:38,192 | INFO     | . initial setup = 3 s
[2025-11-27 02:45:39] 2025-11-27 07:44:38,192 | INFO     | . payload setup = 16 s
[2025-11-27 02:45:39] 2025-11-27 07:44:38,192 | INFO     | . stage-in = 0 s
[2025-11-27 02:45:39] 2025-11-27 07:44:38,192 | INFO     | . payload execution = 26536 s
[2025-11-27 02:45:39] 2025-11-27 07:44:38,192 | INFO     | . stage-out = 5 s
[2025-11-27 02:45:39] 2025-11-27 07:44:38,192 | INFO     | . log creation = 0 s
[2025-11-27 02:45:39] 2025-11-27 07:44:38,192 | INFO     | ..............................
[2025-11-27 02:45:39] 2025-11-27 07:44:38,301 | INFO     | 
[2025-11-27 02:45:39] 2025-11-27 07:44:38,301 | INFO     | job summary report
[2025-11-27 02:45:39] 2025-11-27 07:44:38,301 | INFO     | --------------------------------------------------
[2025-11-27 02:45:39] 2025-11-27 07:44:38,301 | INFO     | PanDA job id: 6897372689
[2025-11-27 02:45:39] 2025-11-27 07:44:38,301 | INFO     | task id: 47556161
[2025-11-27 02:45:39] 2025-11-27 07:44:38,301 | INFO     | errors: (none)
[2025-11-27 02:45:39] 2025-11-27 07:44:38,301 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:45:39] 2025-11-27 07:44:38,301 | INFO     | pilot state: finished 
[2025-11-27 02:45:39] 2025-11-27 07:44:38,301 | INFO     | transexitcode: 0
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | exeerrorcode: 0
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | exeerrordiag: 
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | exitcode: 0
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | exitmsg: OK
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | cpuconsumptiontime: 135739 s
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | nevents: 1000
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | neventsw: 0
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | pid: 329224
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | pgrp: 329224
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | corecount: 8
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | event service: False
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 19: 2284583, 22: 2284611, 26557: 2321751, 26562: 2330745, 26564: 2330801, 26598: 2331047}
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | --------------------------------------------------
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | 
[2025-11-27 02:45:39] 2025-11-27 07:44:38,302 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,532 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,533 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,533 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,533 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,533 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,533 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:45:39] 2025-11-27 07:44:38,533 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,533 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:45:39] 2025-11-27 07:44:38,533 | INFO     | job 6897372689 has completed (purged errors)
[2025-11-27 02:45:39] 2025-11-27 07:44:38,533 | INFO     | overall cleanup function is called
[2025-11-27 02:45:39] 2025-11-27 07:44:39,576 | INFO     | --- collectZombieJob: --- 10, [329224]
[2025-11-27 02:45:39] 2025-11-27 07:44:39,576 | INFO     | zombie collector waiting for pid 329224
[2025-11-27 02:45:39] 2025-11-27 07:44:39,576 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:45:39] 2025-11-27 07:44:39,576 | INFO     | collected zombie processes
[2025-11-27 02:45:39] 2025-11-27 07:44:39,576 | INFO     | will attempt to kill all subprocesses of pid=329224
[2025-11-27 02:45:39] 2025-11-27 07:44:42,791 | INFO     | process IDs to be killed: [329224] (in reverse order)
[2025-11-27 02:45:39] 2025-11-27 07:44:43,185 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:45:39] 2025-11-27 07:44:43,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:45:39] 2025-11-27 07:44:43,260 | INFO     | did not find any defunct processes belonging to 329224
[2025-11-27 02:45:39] 2025-11-27 07:44:43,330 | INFO     | did not find any defunct processes belonging to 329224
[2025-11-27 02:45:39] 2025-11-27 07:44:43,339 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:45:39] 2025-11-27 07:44:43,339 | INFO     | ready for new job
[2025-11-27 02:45:39] 2025-11-27 07:44:43,339 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:45:39] 2025-11-27 07:44:43,341 | INFO     | ***************************************
[2025-11-27 02:45:39] 2025-11-27 07:44:43,341 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:45:39] 2025-11-27 07:44:43,342 | INFO     | ***************************************
[2025-11-27 02:45:39] 2025-11-27 07:44:43,342 | INFO     | 
[2025-11-27 02:45:39] 2025-11-27 07:44:43,350 | INFO     | architecture information:
[2025-11-27 02:45:39] 2025-11-27 07:44:43,355 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:45:39] 2025-11-27 07:44:43,461 | INFO     | cat /etc/os-release:
[2025-11-27 02:45:39] NAME="CentOS Linux"
[2025-11-27 02:45:39] VERSION="7 (Core)"
[2025-11-27 02:45:39] ID="centos"
[2025-11-27 02:45:39] ID_LIKE="rhel fedora"
[2025-11-27 02:45:39] VERSION_ID="7"
[2025-11-27 02:45:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:45:39] ANSI_COLOR="0;31"
[2025-11-27 02:45:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:45:39] HOME_URL="https://www.centos.org/"
[2025-11-27 02:45:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:45:39] 
[2025-11-27 02:45:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:45:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:45:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:45:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:45:39] 
[2025-11-27 02:45:39] 2025-11-27 07:44:43,461 | INFO     | ***************************************
[2025-11-27 02:45:39] 2025-11-27 07:44:43,976 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-27 02:45:39] 2025-11-27 07:44:44,045 | INFO     | sufficient remaining disk space (156011331584 B)
[2025-11-27 02:45:39] 2025-11-27 07:44:44,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:45:39] 2025-11-27 07:44:44,045 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:45:39] 2025-11-27 07:44:44,045 | INFO     | update_server=False
[2025-11-27 02:45:39] 2025-11-27 07:44:44,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:45:39] 2025-11-27 07:44:44,045 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:45:39] 2025-11-27 07:44:44,045 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:45:39] 2025-11-27 07:44:44,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:45:39] 2025-11-27 07:44:44,045 | INFO     | aborting loop
[2025-11-27 02:45:39] 2025-11-27 07:44:44,269 | INFO     | all data control threads have been joined
[2025-11-27 02:45:39] 2025-11-27 07:44:44,730 | INFO     | all job control threads have been joined
[2025-11-27 02:45:39] 2025-11-27 07:44:45,036 | INFO     | all payload control threads have been joined
[2025-11-27 02:45:39] 2025-11-27 07:44:45,052 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:45,053 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:45,053 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:45,108 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:45,274 | INFO     | [data] control thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:45,701 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:45,711 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:45,736 | INFO     | [job] control thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:46,052 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:46,054 | INFO     | [payload] control thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:46,394 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:46,412 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:46,413 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:46,414 | INFO     | [job] validate thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:46,431 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:44:46,700 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:45:39] 2025-11-27 07:44:50,737 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:45:39] 2025-11-27 07:45:13,408 | INFO     | PID=317313 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 02:45:39] 2025-11-27 07:45:13,408 | INFO     | .. there are 99 such processes running
[2025-11-27 02:45:39] 2025-11-27 07:45:13,408 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:45:39] 2025-11-27 07:45:13,408 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:45:39] 2025-11-27 07:45:13,408 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:45:39] 2025-11-27 07:45:30,311 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:45:39] 2025-11-27 07:45:31,807 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139779974838080)>', '<ExcThread(monitor, started 139779618359040)>']
[2025-11-27 02:45:39] 2025-11-27 07:45:32,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:45:39] 2025-11-27 07:45:32,540 | INFO     | [monitor] control thread has ended
[2025-11-27 02:45:39] 2025-11-27 07:45:36,847 | INFO     | all workflow threads have been joined
[2025-11-27 02:45:39] 2025-11-27 07:45:36,848 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:45:39] 2025-11-27 07:45:36,848 | INFO     | traces error code: 0
[2025-11-27 02:45:39] 2025-11-27 07:45:36,848 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:45:39] 2025-11-27 07:45:38,022 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:45:39] 2025-11-27 07:45:38,048 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:45:39] 2025-11-27 07:45:38,062 [wrapper] pilotpid: 317313
[2025-11-27 02:45:39] 2025-11-27 07:45:38,101 [wrapper] Pilot exit status: 0
[2025-11-27 02:45:39] 2025-11-27 07:45:38,192 [wrapper] pandaids: 6897372689
[2025-11-27 02:45:39] 2025-11-27 07:45:38,492 [wrapper] cleanup supervisor_pilot 1130382 317314
[2025-11-27 02:45:39] 2025-11-27 07:45:38,510 [wrapper] Test setup, not cleaning
[2025-11-27 02:45:39] 2025-11-27 07:45:38,554 [wrapper] apfmon messages muted
[2025-11-27 02:45:39] 2025-11-27 07:45:38,587 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:45:39] 2025-11-27 07:45:38,642 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:45:39]  *** Error codes and diagnostics ***
[2025-11-27 02:45:39]     "exeErrorCode": 0,
[2025-11-27 02:45:39]     "exeErrorDiag": "",
[2025-11-27 02:45:39]     "pilotErrorCode": 0,
[2025-11-27 02:45:39]     "pilotErrorDiag": "",
[2025-11-27 02:45:39]  *** Listing of results directory ***
[2025-11-27 02:45:39] total 1321176
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 02:45:39] -rwx------. 1 boincer umatlas     36292 Nov 25 11:55 runpilot2-wrapper.sh
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:45:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:19 run_atlas
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:19 job.xml
[2025-11-27 02:45:39] -rw-r--r--. 2 boincer umatlas 409085744 Nov 26 19:19 EVNT.47483658._002203.pool.root.1
[2025-11-27 02:45:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:19 start_atlas.sh
[2025-11-27 02:45:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:19 shared
[2025-11-27 02:45:39] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 19:19 input.tar.gz
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:19 boinc_lockfile
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 19:20 pandaJob.out
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas        57 Nov 26 19:20 setup.sh.local
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas    991546 Nov 26 19:20 agis_schedconf.cvmfs.json
[2025-11-27 02:45:39] drwx------. 5 boincer umatlas      4096 Nov 26 19:20 pilot3
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas       532 Nov 27 02:20 boinc_task_state.xml
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas      7173 Nov 27 02:36 init_data.xml
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas 929819760 Nov 27 02:43 HITS.47556161._001866.pool.root.1
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas      1053 Nov 27 02:43 memory_monitor_summary.json
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas   1516240 Nov 27 02:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas   1701631 Nov 27 02:44 log.47556161._001866.job.log.tgz.1
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas        95 Nov 27 02:44 pilot_heartbeat.json
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas      8579 Nov 27 02:44 heartbeat.json
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:45 boinc_mmap_file
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas      4824 Nov 27 02:45 pilotlog.txt
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:45 wrapper_checkpoint.txt
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas   3322594 Nov 27 02:45 log.47556161._001866.job.log.1
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas       353 Nov 27 02:45 output.list
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas       620 Nov 27 02:45 runtime_log
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas   5048320 Nov 27 02:45 result.tar.gz
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 02:45 runtime_log.err
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas       658 Nov 27 02:45 AvhNDm8UBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGQMKDmnYbOlm.diag
[2025-11-27 02:45:39] -rw-r--r--. 1 boincer umatlas     21856 Nov 27 02:45 stderr.txt
[2025-11-27 02:45:39] HITS file was successfully produced:
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas 929819760 Nov 27 02:43 shared/HITS.pool.root.1
[2025-11-27 02:45:39]  *** Contents of shared directory: ***
[2025-11-27 02:45:39] total 1313064
[2025-11-27 02:45:39] -rw-r--r--. 2 boincer umatlas 409085744 Nov 26 19:19 ATLAS.root_0
[2025-11-27 02:45:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:19 start_atlas.sh
[2025-11-27 02:45:39] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 19:19 input.tar.gz
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas 929819760 Nov 27 02:43 HITS.pool.root.1
[2025-11-27 02:45:39] -rw-------. 1 boincer umatlas   5048320 Nov 27 02:45 result.tar.gz
02:45:41 (310263): run_atlas exited; CPU time 136234.767455
02:45:41 (310263): called boinc_finish(0)

</stderr_txt>
]]>

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