Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:45:46 (3019): wrapper (7.7.26015): starting
18:45:46 (3019): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:45:46] Arguments: --nthreads 8
[2025-11-26 18:45:46] Threads: 8
[2025-11-26 18:45:46] Checking for CVMFS
[2025-11-26 18:45:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:45:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:45:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:45:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:45:46] 2.11.2.0 12825 118337 136784 153340 3 82 10922720 18432001 1885 130560 0 83042064 99.975 4692022 22955 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 18:45:46] CVMFS is ok
[2025-11-26 18:45:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:45:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:45:46] Further information can be found at the LHC@home message board.
[2025-11-26 18:45:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:45:46] Checking for apptainer binary...
[2025-11-26 18:45:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:45:46] Running /usr/bin/apptainer --version
[2025-11-26 18:45:46] apptainer version 1.3.2-1.el7
[2025-11-26 18:45:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:45:47] c-206-8.aglt2.org
[2025-11-26 18:45:47] apptainer works
[2025-11-26 18:45:47] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:45:47] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:45:47] Starting ATLAS job with PandaID=6897881379
[2025-11-26 18:45:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:41:13]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:41:13] 2025-11-27 18:40:39,879 | INFO     | time since job start (68081s) is within the limit (172800.0s)
[2025-11-27 13:41:13] 2025-11-27 18:40:40,256 | INFO     | monitor loop #4858: job 0:6897881379 is in state 'finished'
[2025-11-27 13:41:13] 2025-11-27 18:40:40,256 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:41:13] 2025-11-27 18:40:40,693 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 13:41:13] 2025-11-27 18:40:40,697 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2455.7083333333335
[2025-11-27 13:41:13] 2025-11-27 18:40:40,700 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6897881379/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:41:13] 2025-11-27 18:40:40,700 | INFO     | extracted standard info from prmon json
[2025-11-27 13:41:13] 2025-11-27 18:40:40,700 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:41:13] 2025-11-27 18:40:40,700 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:41:13] 2025-11-27 18:40:40,727 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:41:13] 2025-11-27 18:40:40,729 | INFO     | sum of square deviations: 430994714895.73553
[2025-11-27 13:41:13] 2025-11-27 18:40:40,751 | INFO     | sum of deviations: 2086838210343.6763
[2025-11-27 13:41:13] 2025-11-27 18:40:40,751 | INFO     | mean x: 1764234792.0860214
[2025-11-27 13:41:13] 2025-11-27 18:40:40,751 | INFO     | mean y: 2863389.3575268816
[2025-11-27 13:41:13] 2025-11-27 18:40:40,751 | INFO     | intersect: -8539405109.302591
[2025-11-27 13:41:13] 2025-11-27 18:40:40,752 | INFO     | chi2: 5.58459086072062
[2025-11-27 13:41:13] 2025-11-27 18:40:40,754 | INFO     | sum of square deviations: 425227903909.0173
[2025-11-27 13:41:13] 2025-11-27 18:40:40,776 | INFO     | sum of deviations: 2426853785365.799
[2025-11-27 13:41:13] 2025-11-27 18:40:40,776 | INFO     | mean x: 1764234639.5886588
[2025-11-27 13:41:13] 2025-11-27 18:40:40,776 | INFO     | mean y: 2872376.174617462
[2025-11-27 13:41:13] 2025-11-27 18:40:40,776 | INFO     | intersect: -10065938898.908802
[2025-11-27 13:41:13] 2025-11-27 18:40:40,777 | INFO     | chi2: 2.850682296754486
[2025-11-27 13:41:13] 2025-11-27 18:40:40,777 | INFO     | current chi2=2.850682296754486 (change=48.95450055607758 %)
[2025-11-27 13:41:13] 2025-11-27 18:40:40,778 | INFO     | sum of square deviations: 419512768309.7805
[2025-11-27 13:41:13] 2025-11-27 18:40:40,800 | INFO     | sum of deviations: 2562641323306.3447
[2025-11-27 13:41:13] 2025-11-27 18:40:40,800 | INFO     | mean x: 1764234487.09132
[2025-11-27 13:41:13] 2025-11-27 18:40:40,800 | INFO     | mean y: 2875997.6401446653
[2025-11-27 13:41:13] 2025-11-27 18:40:40,800 | INFO     | intersect: -10774150453.397165
[2025-11-27 13:41:13] 2025-11-27 18:40:40,801 | INFO     | chi2: 2.3024757498331603
[2025-11-27 13:41:13] 2025-11-27 18:40:40,801 | INFO     | current chi2=2.3024757498331603 (change=19.23071355743364 %)
[2025-11-27 13:41:13] 2025-11-27 18:40:40,801 | INFO     | right removable region: 1105
[2025-11-27 13:41:13] 2025-11-27 18:40:40,802 | INFO     | sum of square deviations: 425227504969.0177
[2025-11-27 13:41:13] 2025-11-27 18:40:40,824 | INFO     | sum of deviations: 1802050437724.1003
[2025-11-27 13:41:13] 2025-11-27 18:40:40,825 | INFO     | mean x: 1764234944.5886588
[2025-11-27 13:41:13] 2025-11-27 18:40:40,825 | INFO     | mean y: 2870911.166516652
[2025-11-27 13:41:13] 2025-11-27 18:40:40,825 | INFO     | intersect: -7473692380.23155
[2025-11-27 13:41:13] 2025-11-27 18:40:40,826 | INFO     | chi2: 3.6060704339112792
[2025-11-27 13:41:13] 2025-11-27 18:40:40,826 | INFO     | current chi2=3.6060704339112792 (change=35.42820729671211 %)
[2025-11-27 13:41:13] 2025-11-27 18:40:40,827 | INFO     | sum of square deviations: 419512106094.1406
[2025-11-27 13:41:13] 2025-11-27 18:40:40,864 | INFO     | sum of deviations: 1730909455139.1624
[2025-11-27 13:41:13] 2025-11-27 18:40:40,865 | INFO     | mean x: 1764235097.0895119
[2025-11-27 13:41:13] 2025-11-27 18:40:40,865 | INFO     | mean y: 2872808.9882459315
[2025-11-27 13:41:13] 2025-11-27 18:40:40,865 | INFO     | intersect: -7276371737.902903
[2025-11-27 13:41:13] 2025-11-27 18:40:40,866 | INFO     | chi2: 3.5595000682799642
[2025-11-27 13:41:13] 2025-11-27 18:40:40,867 | INFO     | current chi2=3.5595000682799642 (change=1.291443594483623 %)
[2025-11-27 13:41:13] 2025-11-27 18:40:40,867 | INFO     | left removable region: 20
[2025-11-27 13:41:13] 2025-11-27 18:40:40,868 | INFO     | sum of square deviations: 396067118519.18634
[2025-11-27 13:41:13] 2025-11-27 18:40:40,910 | INFO     | sum of deviations: 2124790670686.578
[2025-11-27 13:41:13] 2025-11-27 18:40:40,910 | INFO     | mean x: 1764235066.5963135
[2025-11-27 13:41:13] 2025-11-27 18:40:40,911 | INFO     | mean y: 2888609.544700461
[2025-11-27 13:41:13] 2025-11-27 18:40:40,911 | INFO     | intersect: -9461745123.286541
[2025-11-27 13:41:13] 2025-11-27 18:40:40,912 | INFO     | chi2: 0.21274283419876636
[2025-11-27 13:41:13] 2025-11-27 18:40:40,913 | INFO     | current memory leak: 5.36 B/s (using 1085 data points, chi2=0.21)
[2025-11-27 13:41:13] 2025-11-27 18:40:40,914 | INFO     | could have reported an average CPU frequency of 2630 MHz (40 samples)
[2025-11-27 13:41:13] 2025-11-27 18:40:40,914 | INFO     | ..............................
[2025-11-27 13:41:13] 2025-11-27 18:40:40,914 | INFO     | . Timing measurements:
[2025-11-27 13:41:13] 2025-11-27 18:40:40,915 | INFO     | . get job = 0 s
[2025-11-27 13:41:13] 2025-11-27 18:40:40,915 | INFO     | . initial setup = 2 s
[2025-11-27 13:41:13] 2025-11-27 18:40:40,915 | INFO     | . payload setup = 5 s
[2025-11-27 13:41:13] 2025-11-27 18:40:40,915 | INFO     | . stage-in = 0 s
[2025-11-27 13:41:13] 2025-11-27 18:40:40,915 | INFO     | . payload execution = 68046 s
[2025-11-27 13:41:13] 2025-11-27 18:40:40,915 | INFO     | . stage-out = 3 s
[2025-11-27 13:41:13] 2025-11-27 18:40:40,916 | INFO     | . log creation = 0 s
[2025-11-27 13:41:13] 2025-11-27 18:40:40,916 | INFO     | ..............................
[2025-11-27 13:41:13] 2025-11-27 18:40:41,075 | INFO     | 
[2025-11-27 13:41:13] 2025-11-27 18:40:41,076 | INFO     | job summary report
[2025-11-27 13:41:13] 2025-11-27 18:40:41,076 | INFO     | --------------------------------------------------
[2025-11-27 13:41:13] 2025-11-27 18:40:41,076 | INFO     | PanDA job id: 6897881379
[2025-11-27 13:41:13] 2025-11-27 18:40:41,076 | INFO     | task id: 47556161
[2025-11-27 13:41:13] 2025-11-27 18:40:41,076 | INFO     | errors: (none)
[2025-11-27 13:41:13] 2025-11-27 18:40:41,076 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:41:13] 2025-11-27 18:40:41,077 | INFO     | pilot state: finished 
[2025-11-27 13:41:13] 2025-11-27 18:40:41,077 | INFO     | transexitcode: 0
[2025-11-27 13:41:13] 2025-11-27 18:40:41,077 | INFO     | exeerrorcode: 0
[2025-11-27 13:41:13] 2025-11-27 18:40:41,077 | INFO     | exeerrordiag: 
[2025-11-27 13:41:13] 2025-11-27 18:40:41,077 | INFO     | exitcode: 0
[2025-11-27 13:41:13] 2025-11-27 18:40:41,077 | INFO     | exitmsg: OK
[2025-11-27 13:41:13] 2025-11-27 18:40:41,078 | INFO     | cpuconsumptiontime: 531170 s
[2025-11-27 13:41:13] 2025-11-27 18:40:41,078 | INFO     | nevents: 1000
[2025-11-27 13:41:13] 2025-11-27 18:40:41,078 | INFO     | neventsw: 0
[2025-11-27 13:41:13] 2025-11-27 18:40:41,078 | INFO     | pid: 13227
[2025-11-27 13:41:13] 2025-11-27 18:40:41,078 | INFO     | pgrp: 13227
[2025-11-27 13:41:13] 2025-11-27 18:40:41,078 | INFO     | corecount: 8
[2025-11-27 13:41:13] 2025-11-27 18:40:41,078 | INFO     | event service: False
[2025-11-27 13:41:13] 2025-11-27 18:40:41,079 | INFO     | sizes: {0: 2284093, 1: 2284292, 4: 2284554, 12: 2284582, 68055: 2340339, 68059: 2349333, 68063: 2349517, 68067: 2349763}
[2025-11-27 13:41:13] 2025-11-27 18:40:41,079 | INFO     | --------------------------------------------------
[2025-11-27 13:41:13] 2025-11-27 18:40:41,079 | INFO     | 
[2025-11-27 13:41:13] 2025-11-27 18:40:41,079 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 13:41:13] 2025-11-27 18:40:41,098 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,099 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,099 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,099 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,099 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,099 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,100 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,100 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,100 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,100 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,100 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,101 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,101 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,101 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,101 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,101 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,101 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,102 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:41:13] 2025-11-27 18:40:41,102 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,102 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:41:13] 2025-11-27 18:40:41,102 | INFO     | job 6897881379 has completed (purged errors)
[2025-11-27 13:41:13] 2025-11-27 18:40:41,103 | INFO     | overall cleanup function is called
[2025-11-27 13:41:13] 2025-11-27 18:40:42,119 | INFO     | --- collectZombieJob: --- 10, [13227]
[2025-11-27 13:41:13] 2025-11-27 18:40:42,119 | INFO     | zombie collector waiting for pid 13227
[2025-11-27 13:41:13] 2025-11-27 18:40:42,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:41:13] 2025-11-27 18:40:42,119 | INFO     | collected zombie processes
[2025-11-27 13:41:13] 2025-11-27 18:40:42,119 | INFO     | will attempt to kill all subprocesses of pid=13227
[2025-11-27 13:41:13] 2025-11-27 18:40:42,258 | INFO     | process IDs to be killed: [13227] (in reverse order)
[2025-11-27 13:41:13] 2025-11-27 18:40:42,308 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:41:13] 2025-11-27 18:40:42,309 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:41:13] 2025-11-27 18:40:42,314 | INFO     | did not find any defunct processes belonging to 13227
[2025-11-27 13:41:13] 2025-11-27 18:40:42,319 | INFO     | did not find any defunct processes belonging to 13227
[2025-11-27 13:41:13] 2025-11-27 18:40:42,321 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:41:13] 2025-11-27 18:40:42,321 | INFO     | ready for new job
[2025-11-27 13:41:13] 2025-11-27 18:40:42,321 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:41:13] 2025-11-27 18:40:42,326 | INFO     | ***************************************
[2025-11-27 13:41:13] 2025-11-27 18:40:42,326 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:41:13] 2025-11-27 18:40:42,326 | INFO     | ***************************************
[2025-11-27 13:41:13] 2025-11-27 18:40:42,326 | INFO     | 
[2025-11-27 13:41:13] 2025-11-27 18:40:42,328 | INFO     | architecture information:
[2025-11-27 13:41:13] 2025-11-27 18:40:42,328 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:41:13] 2025-11-27 18:40:42,340 | INFO     | cat /etc/os-release:
[2025-11-27 13:41:13] NAME="CentOS Linux"
[2025-11-27 13:41:13] VERSION="7 (Core)"
[2025-11-27 13:41:13] ID="centos"
[2025-11-27 13:41:13] ID_LIKE="rhel fedora"
[2025-11-27 13:41:13] VERSION_ID="7"
[2025-11-27 13:41:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:41:13] ANSI_COLOR="0;31"
[2025-11-27 13:41:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:41:13] HOME_URL="https://www.centos.org/"
[2025-11-27 13:41:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:41:13] 
[2025-11-27 13:41:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:41:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:41:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:41:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:41:13] 
[2025-11-27 13:41:13] 2025-11-27 18:40:42,340 | INFO     | ***************************************
[2025-11-27 13:41:13] 2025-11-27 18:40:42,843 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 13:41:13] 2025-11-27 18:40:42,860 | INFO     | sufficient remaining disk space (25100812288 B)
[2025-11-27 13:41:13] 2025-11-27 18:40:42,861 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:41:13] 2025-11-27 18:40:42,861 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:41:13] 2025-11-27 18:40:42,861 | INFO     | update_server=False
[2025-11-27 13:41:13] 2025-11-27 18:40:42,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:41:13] 2025-11-27 18:40:42,862 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:41:13] 2025-11-27 18:40:42,862 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:41:13] 2025-11-27 18:40:43,068 | INFO     | all job control threads have been joined
[2025-11-27 13:41:13] 2025-11-27 18:40:43,162 | INFO     | all data control threads have been joined
[2025-11-27 13:41:13] 2025-11-27 18:40:43,484 | INFO     | all payload control threads have been joined
[2025-11-27 13:41:13] 2025-11-27 18:40:43,764 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:41:13] 2025-11-27 18:40:43,764 | INFO     | aborting loop
[2025-11-27 13:41:13] 2025-11-27 18:40:43,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:41:13] 2025-11-27 18:40:43,867 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:43,867 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:43,914 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:44,073 | INFO     | [job] control thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:44,158 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:44,167 | INFO     | [data] control thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:44,489 | INFO     | [payload] control thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:44,624 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:44,666 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:44,694 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:44,701 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:44,769 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:45,119 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:45,228 | INFO     | [job] validate thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:45,837 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:46,869 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:41:13] 2025-11-27 18:40:50,858 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:41:13] 2025-11-27 18:40:50,873 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139906962687808)>', '<ExcThread(monitor, started 139906521220864)>']
[2025-11-27 13:41:13] 2025-11-27 18:40:55,898 | INFO     | all workflow threads have been joined
[2025-11-27 13:41:13] 2025-11-27 18:40:55,898 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:41:13] 2025-11-27 18:40:55,898 | INFO     | traces error code: 0
[2025-11-27 13:41:13] 2025-11-27 18:40:55,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:41:13] 2025-11-27 18:41:13,186 | INFO     | PID=6785 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 13:41:13] 2025-11-27 18:41:13,186 | INFO     | .. there are 3 such processes running
[2025-11-27 13:41:13] 2025-11-27 18:41:13,187 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:41:13] 2025-11-27 18:41:13,187 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:41:13] 2025-11-27 18:41:13,187 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:41:13] 2025-11-27 18:41:13,187 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:41:13] 2025-11-27 18:41:13,187 | INFO     | [monitor] control thread has ended
[2025-11-27 13:41:13] 2025-11-27 18:41:13,317 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:41:13] 2025-11-27 18:41:13,319 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:41:13] 2025-11-27 18:41:13,322 [wrapper] pilotpid: 6785
[2025-11-27 13:41:13] 2025-11-27 18:41:13,324 [wrapper] Pilot exit status: 0
[2025-11-27 13:41:13] 2025-11-27 18:41:13,332 [wrapper] pandaids: 6897881379
[2025-11-27 13:41:13] 2025-11-27 18:41:13,371 [wrapper] cleanup supervisor_pilot 31984 6786
[2025-11-27 13:41:13] 2025-11-27 18:41:13,373 [wrapper] Test setup, not cleaning
[2025-11-27 13:41:13] 2025-11-27 18:41:13,375 [wrapper] apfmon messages muted
[2025-11-27 13:41:13] 2025-11-27 18:41:13,377 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:41:13] 2025-11-27 18:41:13,379 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:41:13]  *** Error codes and diagnostics ***
[2025-11-27 13:41:13]     "exeErrorCode": 0,
[2025-11-27 13:41:13]     "exeErrorDiag": "",
[2025-11-27 13:41:13]     "pilotErrorCode": 0,
[2025-11-27 13:41:13]     "pilotErrorDiag": "",
[2025-11-27 13:41:13]  *** Listing of results directory ***
[2025-11-27 13:41:13] total 1317724
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 21:07 queuedata.json
[2025-11-27 13:41:13] -rwx------ 1 boincer umatlas     36292 Nov 25 21:10 runpilot2-wrapper.sh
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas       100 Nov 26 18:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:41:13] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 18:45 run_atlas
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas       105 Nov 26 18:45 job.xml
[2025-11-27 13:41:13] -rw-r--r-- 2 boincer umatlas 409776645 Nov 26 18:45 EVNT.47483658._002369.pool.root.1
[2025-11-27 13:41:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 18:45 start_atlas.sh
[2025-11-27 13:41:13] drwxrwx--x 2 boincer umatlas      4096 Nov 26 18:45 shared
[2025-11-27 13:41:13] -rw-r--r-- 2 boincer umatlas    590106 Nov 26 18:45 input.tar.gz
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas         0 Nov 26 18:45 boinc_lockfile
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 18:45 pandaJob.out
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas        57 Nov 26 18:45 setup.sh.local
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas    991538 Nov 26 18:45 agis_schedconf.cvmfs.json
[2025-11-27 13:41:13] drwx------ 5 boincer umatlas      4096 Nov 26 18:45 pilot3
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas       532 Nov 27 13:28 boinc_task_state.xml
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas      5953 Nov 27 13:38 init_data.xml
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas 912263549 Nov 27 13:39 HITS.47556161._003515.pool.root.1
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas      1066 Nov 27 13:40 memory_monitor_summary.json
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas   1516240 Nov 27 13:40 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas   2291286 Nov 27 13:40 log.47556161._003515.job.log.tgz.1
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas      8675 Nov 27 13:40 heartbeat.json
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 13:41 boinc_mmap_file
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas        29 Nov 27 13:41 wrapper_checkpoint.txt
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas       819 Nov 27 13:41 pilotlog.txt
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas        95 Nov 27 13:41 pilot_heartbeat.json
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas   9404760 Nov 27 13:41 log.47556161._003515.job.log.1
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas       353 Nov 27 13:41 output.list
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas       620 Nov 27 13:41 runtime_log
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas  11714560 Nov 27 13:41 result.tar.gz
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas      9338 Nov 27 13:41 runtime_log.err
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas       667 Nov 27 13:41 F6OLDm79Ji8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmviMKDmHOdyum.diag
[2025-11-27 13:41:13] -rw-r--r-- 1 boincer umatlas     21305 Nov 27 13:41 stderr.txt
[2025-11-27 13:41:13] HITS file was successfully produced:
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas 912263549 Nov 27 13:39 shared/HITS.pool.root.1
[2025-11-27 13:41:13]  *** Contents of shared directory: ***
[2025-11-27 13:41:13] total 1303100
[2025-11-27 13:41:13] -rw-r--r-- 2 boincer umatlas 409776645 Nov 26 18:45 ATLAS.root_0
[2025-11-27 13:41:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 18:45 start_atlas.sh
[2025-11-27 13:41:13] -rw-r--r-- 2 boincer umatlas    590106 Nov 26 18:45 input.tar.gz
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas 912263549 Nov 27 13:39 HITS.pool.root.1
[2025-11-27 13:41:13] -rw------- 1 boincer umatlas  11714560 Nov 27 13:41 result.tar.gz
13:41:14 (3019): run_atlas exited; CPU time 530563.630231
13:41:14 (3019): called boinc_finish(0)

</stderr_txt>
]]>

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