Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:38:56 (3493094): wrapper (7.7.26015): starting
18:38:56 (3493094): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 18:38:56] Arguments: --nthreads 9
[2025-11-26 18:38:56] Threads: 9
[2025-11-26 18:38:56] Checking for CVMFS
[2025-11-26 18:38:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:38:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:38:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:38:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:38:59] 2.13.3.0 11048 30721 399600 153340 0 516 25608244 32935937 29554 16776704 0 88919475 99.424 130774227 37189 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 18:38:59] CVMFS is ok
[2025-11-26 18:38:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:38:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:38:59] Further information can be found at the LHC@home message board.
[2025-11-26 18:38:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:38:59] Checking for apptainer binary...
[2025-11-26 18:38:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:38:59] Running /usr/bin/apptainer --version
[2025-11-26 18:38:59] apptainer version 1.4.4-1.el9
[2025-11-26 18:38:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:38:59] c6-1-24-2.aglt2.org
[2025-11-26 18:38:59] apptainer works
[2025-11-26 18:38:59] Set ATHENA_PROC_NUMBER=9
[2025-11-26 18:38:59] Set ATHENA_CORE_NUMBER=9
[2025-11-26 18:38:59] Starting ATLAS job with PandaID=6897881257
[2025-11-26 18:38:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:27:03]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:27:03] 2025-11-27 16:25:41,728 | INFO     | monitor loop #3368: job 0:6897881257 is in state 'finished'
[2025-11-27 11:27:03] 2025-11-27 16:25:41,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:27:03] 2025-11-27 16:25:44,360 | INFO     | monitor loop #3369: job 0:6897881257 is in state 'finished'
[2025-11-27 11:27:03] 2025-11-27 16:25:44,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:27:03] 2025-11-27 16:25:45,077 | INFO     | PID=3513729 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:27:03] 2025-11-27 16:25:45,078 | INFO     | .. there are 47 such processes running
[2025-11-27 11:27:03] 2025-11-27 16:25:46,096 | INFO     | time since job start (60344s) is within the limit (172800.0s)
[2025-11-27 11:27:03] 2025-11-27 16:25:46,868 | INFO     | monitor loop #3370: job 0:6897881257 is in state 'finished'
[2025-11-27 11:27:03] 2025-11-27 16:25:46,868 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:27:03] 2025-11-27 16:25:48,160 | INFO     | time since job start (60346s) is within the limit (172800.0s)
[2025-11-27 11:27:03] 2025-11-27 16:25:49,375 | INFO     | monitor loop #3371: job 0:6897881257 is in state 'finished'
[2025-11-27 11:27:03] 2025-11-27 16:25:49,375 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:27:03] 2025-11-27 16:25:50,167 | INFO     | time since job start (60348s) is within the limit (172800.0s)
[2025-11-27 11:27:03] 2025-11-27 16:25:51,879 | INFO     | monitor loop #3372: job 0:6897881257 is in state 'finished'
[2025-11-27 11:27:03] 2025-11-27 16:25:51,880 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 11:27:03] 2025-11-27 16:25:52,174 | INFO     | time since job start (60350s) is within the limit (172800.0s)
[2025-11-27 11:27:03] 2025-11-27 16:25:53,824 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 11:27:03] 2025-11-27 16:25:53,836 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2961.9820535714293
[2025-11-27 11:27:03] 2025-11-27 16:25:53,847 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897881257/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 11:27:03] 2025-11-27 16:25:53,848 | INFO     | extracted standard info from prmon json
[2025-11-27 11:27:03] 2025-11-27 16:25:53,848 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 11:27:03] 2025-11-27 16:25:53,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 11:27:03] 2025-11-27 16:25:53,863 | INFO     | fitting pss+swap vs Time
[2025-11-27 11:27:03] 2025-11-27 16:25:53,865 | INFO     | sum of square deviations: 298183945689.958
[2025-11-27 11:27:03] 2025-11-27 16:25:53,887 | INFO     | sum of deviations: 1337870183141.8933
[2025-11-27 11:27:03] 2025-11-27 16:25:53,887 | INFO     | mean x: 1764230603.4468086
[2025-11-27 11:27:03] 2025-11-27 16:25:53,888 | INFO     | mean y: 3050890.7122593718
[2025-11-27 11:27:03] 2025-11-27 16:25:53,888 | INFO     | intersect: -7912571511.6825695
[2025-11-27 11:27:03] 2025-11-27 16:25:53,889 | INFO     | chi2: 19.742333755466
[2025-11-27 11:27:03] 2025-11-27 16:25:53,890 | INFO     | sum of square deviations: 293676676471.6059
[2025-11-27 11:27:03] 2025-11-27 16:25:53,924 | INFO     | sum of deviations: 1718343285033.0173
[2025-11-27 11:27:03] 2025-11-27 16:25:53,924 | INFO     | mean x: 1764230450.9623218
[2025-11-27 11:27:03] 2025-11-27 16:25:53,925 | INFO     | mean y: 3063759.3248472507
[2025-11-27 11:27:03] 2025-11-27 16:25:53,925 | INFO     | intersect: -10319695218.62546
[2025-11-27 11:27:03] 2025-11-27 16:25:53,930 | INFO     | chi2: 15.843161455883624
[2025-11-27 11:27:03] 2025-11-27 16:25:53,930 | INFO     | current chi2=15.843161455883624 (change=19.750310920069534 %)
[2025-11-27 11:27:03] 2025-11-27 16:25:53,930 | INFO     | right removable region: 981
[2025-11-27 11:27:03] 2025-11-27 16:25:53,931 | INFO     | sum of square deviations: 293674721167.7525
[2025-11-27 11:27:03] 2025-11-27 16:25:53,969 | INFO     | sum of deviations: 932469861017.8042
[2025-11-27 11:27:03] 2025-11-27 16:25:53,970 | INFO     | mean x: 1764230755.9643586
[2025-11-27 11:27:03] 2025-11-27 16:25:53,970 | INFO     | mean y: 3064599.737270876
[2025-11-27 11:27:03] 2025-11-27 16:25:53,970 | INFO     | intersect: -5598684169.363334
[2025-11-27 11:27:03] 2025-11-27 16:25:53,971 | INFO     | chi2: 15.98588846236595
[2025-11-27 11:27:03] 2025-11-27 16:25:53,971 | INFO     | current chi2=15.98588846236595 (change=19.027361909835076 %)
[2025-11-27 11:27:03] 2025-11-27 16:25:53,971 | INFO     | left removable region: 10
[2025-11-27 11:27:03] 2025-11-27 16:25:53,972 | INFO     | sum of square deviations: 283917366900.7496
[2025-11-27 11:27:03] 2025-11-27 16:25:54,010 | INFO     | sum of deviations: 1183978324748.3774
[2025-11-27 11:27:03] 2025-11-27 16:25:54,010 | INFO     | mean x: 1764230725.499485
[2025-11-27 11:27:03] 2025-11-27 16:25:54,010 | INFO     | mean y: 3086874.7600411945
[2025-11-27 11:27:03] 2025-11-27 16:25:54,010 | INFO     | intersect: -7354021856.023205
[2025-11-27 11:27:03] 2025-11-27 16:25:54,011 | INFO     | chi2: 10.38400020251282
[2025-11-27 11:27:03] 2025-11-27 16:25:54,012 | INFO     | current memory leak: 4.17 B/s (using 971 data points, chi2=10.38)
[2025-11-27 11:27:03] 2025-11-27 16:25:54,013 | INFO     | could have reported an average CPU frequency of 3049 MHz (36 samples)
[2025-11-27 11:27:03] 2025-11-27 16:25:54,013 | INFO     | ..............................
[2025-11-27 11:27:03] 2025-11-27 16:25:54,013 | INFO     | . Timing measurements:
[2025-11-27 11:27:03] 2025-11-27 16:25:54,017 | INFO     | . get job = 0 s
[2025-11-27 11:27:03] 2025-11-27 16:25:54,017 | INFO     | . initial setup = 4 s
[2025-11-27 11:27:03] 2025-11-27 16:25:54,017 | INFO     | . payload setup = 36 s
[2025-11-27 11:27:03] 2025-11-27 16:25:54,017 | INFO     | . stage-in = 0 s
[2025-11-27 11:27:03] 2025-11-27 16:25:54,017 | INFO     | . payload execution = 60199 s
[2025-11-27 11:27:03] 2025-11-27 16:25:54,017 | INFO     | . stage-out = 11 s
[2025-11-27 11:27:03] 2025-11-27 16:25:54,018 | INFO     | . log creation = 3 s
[2025-11-27 11:27:03] 2025-11-27 16:25:54,018 | INFO     | ..............................
[2025-11-27 11:27:03] 2025-11-27 16:25:54,191 | INFO     | time since job start (60352s) is within the limit (172800.0s)
[2025-11-27 11:27:03] 2025-11-27 16:25:54,207 | INFO     | 
[2025-11-27 11:27:03] 2025-11-27 16:25:54,207 | INFO     | job summary report
[2025-11-27 11:27:03] 2025-11-27 16:25:54,207 | INFO     | --------------------------------------------------
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | PanDA job id: 6897881257
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | task id: 47556161
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | errors: (none)
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | pilot state: finished 
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | transexitcode: 0
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | exeerrorcode: 0
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | exeerrordiag: 
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | exitcode: 0
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | exitmsg: OK
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | cpuconsumptiontime: 231909 s
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | nevents: 1000
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | neventsw: 0
[2025-11-27 11:27:03] 2025-11-27 16:25:54,208 | INFO     | pid: 3530502
[2025-11-27 11:27:03] 2025-11-27 16:25:54,209 | INFO     | pgrp: 3530502
[2025-11-27 11:27:03] 2025-11-27 16:25:54,209 | INFO     | corecount: 9
[2025-11-27 11:27:03] 2025-11-27 16:25:54,209 | INFO     | event service: False
[2025-11-27 11:27:03] 2025-11-27 16:25:54,209 | INFO     | sizes: {0: 2284093, 1: 2284292, 12: 2284292, 23: 2284320, 27: 2284610, 34: 2284638, 60240: 2336765, 60242: 2336764, 60253: 2345814, 60254: 2345870, 60291: 2346116}
[2025-11-27 11:27:03] 2025-11-27 16:25:54,209 | INFO     | --------------------------------------------------
[2025-11-27 11:27:03] 2025-11-27 16:25:54,209 | INFO     | 
[2025-11-27 11:27:03] 2025-11-27 16:25:54,209 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 11:27:03] 2025-11-27 16:25:54,285 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,285 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,285 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,285 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,285 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,285 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,285 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,285 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,285 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 11:27:03] 2025-11-27 16:25:54,286 | INFO     | job 6897881257 has completed (purged errors)
[2025-11-27 11:27:03] 2025-11-27 16:25:54,287 | INFO     | overall cleanup function is called
[2025-11-27 11:27:03] 2025-11-27 16:25:55,311 | INFO     | --- collectZombieJob: --- 10, [3530502]
[2025-11-27 11:27:03] 2025-11-27 16:25:55,311 | INFO     | zombie collector waiting for pid 3530502
[2025-11-27 11:27:03] 2025-11-27 16:25:55,311 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 11:27:03] 2025-11-27 16:25:55,312 | INFO     | collected zombie processes
[2025-11-27 11:27:03] 2025-11-27 16:25:55,312 | INFO     | will attempt to kill all subprocesses of pid=3530502
[2025-11-27 11:27:03] 2025-11-27 16:25:57,332 | INFO     | process IDs to be killed: [3530502] (in reverse order)
[2025-11-27 11:27:03] 2025-11-27 16:25:57,659 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 11:27:03] 2025-11-27 16:25:57,659 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 11:27:03] 2025-11-27 16:25:57,689 | INFO     | did not find any defunct processes belonging to 3530502
[2025-11-27 11:27:03] 2025-11-27 16:25:57,745 | INFO     | did not find any defunct processes belonging to 3530502
[2025-11-27 11:27:03] 2025-11-27 16:25:57,750 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 11:27:03] 2025-11-27 16:25:57,750 | INFO     | ready for new job
[2025-11-27 11:27:03] 2025-11-27 16:25:57,750 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 11:27:03] 2025-11-27 16:25:57,763 | INFO     | ***************************************
[2025-11-27 11:27:03] 2025-11-27 16:25:57,763 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 11:27:03] 2025-11-27 16:25:57,763 | INFO     | ***************************************
[2025-11-27 11:27:03] 2025-11-27 16:25:57,763 | INFO     | 
[2025-11-27 11:27:03] 2025-11-27 16:25:57,771 | INFO     | architecture information:
[2025-11-27 11:27:03] 2025-11-27 16:25:57,773 | INFO     | executing command: cat /etc/os-release
[2025-11-27 11:27:03] 2025-11-27 16:25:57,877 | INFO     | cat /etc/os-release:
[2025-11-27 11:27:03] NAME="CentOS Linux"
[2025-11-27 11:27:03] VERSION="7 (Core)"
[2025-11-27 11:27:03] ID="centos"
[2025-11-27 11:27:03] ID_LIKE="rhel fedora"
[2025-11-27 11:27:03] VERSION_ID="7"
[2025-11-27 11:27:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 11:27:03] ANSI_COLOR="0;31"
[2025-11-27 11:27:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 11:27:03] HOME_URL="https://www.centos.org/"
[2025-11-27 11:27:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 11:27:03] 
[2025-11-27 11:27:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 11:27:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 11:27:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 11:27:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 11:27:03] 
[2025-11-27 11:27:03] 2025-11-27 16:25:57,885 | INFO     | ***************************************
[2025-11-27 11:27:03] 2025-11-27 16:25:58,398 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 11:27:03] 2025-11-27 16:25:58,501 | INFO     | sufficient remaining disk space (69880250368 B)
[2025-11-27 11:27:03] 2025-11-27 16:25:58,501 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:27:03] 2025-11-27 16:25:58,502 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:27:03] 2025-11-27 16:25:58,502 | INFO     | update_server=False
[2025-11-27 11:27:03] 2025-11-27 16:25:58,502 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:27:03] 2025-11-27 16:25:58,502 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:27:03] 2025-11-27 16:25:58,502 | INFO     | aborting loop
[2025-11-27 11:27:03] 2025-11-27 16:25:58,824 | INFO     | all payload control threads have been joined
[2025-11-27 11:27:03] 2025-11-27 16:25:58,974 | INFO     | all data control threads have been joined
[2025-11-27 11:27:03] 2025-11-27 16:25:59,244 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:27:03] 2025-11-27 16:25:59,362 | INFO     | all job control threads have been joined
[2025-11-27 11:27:03] 2025-11-27 16:25:59,539 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:25:59,556 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:25:59,690 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:25:59,700 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:27:03] 2025-11-27 16:25:59,851 | INFO     | [payload] control thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:25:59,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:27:03] 2025-11-27 16:25:59,980 | INFO     | [data] control thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:00,250 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:00,368 | INFO     | [job] control thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:00,461 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:00,687 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:00,725 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:00,857 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:00,942 | INFO     | [job] validate thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:01,006 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:01,007 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:01,707 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:03,939 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:27:03] 2025-11-27 16:26:28,629 | INFO     | PID=3513729 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:27:03] 2025-11-27 16:26:28,629 | INFO     | .. there are 47 such processes running
[2025-11-27 11:27:03] 2025-11-27 16:26:28,630 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:27:03] 2025-11-27 16:26:28,630 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:27:03] 2025-11-27 16:26:28,630 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:27:03] 2025-11-27 16:26:55,412 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:27:03] 2025-11-27 16:26:56,709 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140215071668032)>', '<ExcThread(monitor, started 140214789965568)>']
[2025-11-27 11:27:03] 2025-11-27 16:26:56,859 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:27:03] 2025-11-27 16:26:56,859 | INFO     | [monitor] control thread has ended
[2025-11-27 11:27:03] 2025-11-27 16:27:01,735 | INFO     | all workflow threads have been joined
[2025-11-27 11:27:03] 2025-11-27 16:27:01,737 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:27:03] 2025-11-27 16:27:01,737 | INFO     | traces error code: 0
[2025-11-27 11:27:03] 2025-11-27 16:27:01,738 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:27:03] 2025-11-27 16:27:02,317 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:27:03] 2025-11-27 16:27:02,335 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:27:03] 2025-11-27 16:27:02,372 [wrapper] pilotpid: 3513729
[2025-11-27 11:27:03] 2025-11-27 16:27:02,400 [wrapper] Pilot exit status: 0
[2025-11-27 11:27:03] 2025-11-27 16:27:02,471 [wrapper] pandaids: 6897881257
[2025-11-27 11:27:03] 2025-11-27 16:27:02,734 [wrapper] cleanup supervisor_pilot 3909874 3513730
[2025-11-27 11:27:03] 2025-11-27 16:27:02,749 [wrapper] Test setup, not cleaning
[2025-11-27 11:27:03] 2025-11-27 16:27:02,753 [wrapper] apfmon messages muted
[2025-11-27 11:27:03] 2025-11-27 16:27:02,756 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:27:03] 2025-11-27 16:27:02,758 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:27:03]  *** Error codes and diagnostics ***
[2025-11-27 11:27:03]     "exeErrorCode": 0,
[2025-11-27 11:27:03]     "exeErrorDiag": "",
[2025-11-27 11:27:03]     "pilotErrorCode": 0,
[2025-11-27 11:27:03]     "pilotErrorDiag": "",
[2025-11-27 11:27:03]  *** Listing of results directory ***
[2025-11-27 11:27:03] total 1305932
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:07 queuedata.json
[2025-11-27 11:27:03] -rwx------. 1 boincer umatlas     36292 Nov 25 21:10 runpilot2-wrapper.sh
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas       100 Nov 26 18:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:27:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 18:38 run_atlas
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas       105 Nov 26 18:38 job.xml
[2025-11-27 11:27:03] -rw-r--r--. 2 boincer umatlas 407652822 Nov 26 18:38 EVNT.47483658._002365.pool.root.1
[2025-11-27 11:27:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:38 start_atlas.sh
[2025-11-27 11:27:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 18:38 shared
[2025-11-27 11:27:03] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 18:38 input.tar.gz
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas         0 Nov 26 18:38 boinc_lockfile
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 18:38 pandaJob.out
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas        57 Nov 26 18:39 setup.sh.local
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas    991538 Nov 26 18:39 agis_schedconf.cvmfs.json
[2025-11-27 11:27:03] drwx------. 5 boincer umatlas      4096 Nov 26 18:40 pilot3
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:58 boinc_task_state.xml
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 11:20 init_data.xml
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas 906718242 Nov 27 11:23 HITS.47556161._003472.pool.root.1
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas      1058 Nov 27 11:24 memory_monitor_summary.json
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas   1516240 Nov 27 11:25 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas   2210840 Nov 27 11:25 log.47556161._003472.job.log.tgz.1
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas      8623 Nov 27 11:25 heartbeat.json
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas        95 Nov 27 11:26 pilot_heartbeat.json
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 11:27 boinc_mmap_file
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas      4824 Nov 27 11:27 pilotlog.txt
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas   7281643 Nov 27 11:27 log.47556161._003472.job.log.1
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas       353 Nov 27 11:27 output.list
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas       620 Nov 27 11:27 runtime_log
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas   9512960 Nov 27 11:27 result.tar.gz
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas       661 Nov 27 11:27 zUXKDm79Ji8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIiMKDmOZ6OXn.diag
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 11:27 runtime_log.err
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas        29 Nov 27 11:27 wrapper_checkpoint.txt
[2025-11-27 11:27:03] -rw-r--r--. 1 boincer umatlas     21649 Nov 27 11:27 stderr.txt
[2025-11-27 11:27:03] HITS file was successfully produced:
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas 906718242 Nov 27 11:23 shared/HITS.pool.root.1
[2025-11-27 11:27:03]  *** Contents of shared directory: ***
[2025-11-27 11:27:03] total 1293460
[2025-11-27 11:27:03] -rw-r--r--. 2 boincer umatlas 407652822 Nov 26 18:38 ATLAS.root_0
[2025-11-27 11:27:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:38 start_atlas.sh
[2025-11-27 11:27:03] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 18:38 input.tar.gz
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas 906718242 Nov 27 11:23 HITS.pool.root.1
[2025-11-27 11:27:03] -rw-------. 1 boincer umatlas   9512960 Nov 27 11:27 result.tar.gz
11:27:25 (3493094): run_atlas exited; CPU time 233429.322294
11:27:25 (3493094): called boinc_finish(0)

</stderr_txt>
]]>

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