Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:07:04 (26651): wrapper (7.7.26015): starting
15:07:04 (26651): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 15:07:04] Arguments: --nthreads 8
[2025-11-26 15:07:04] Threads: 8
[2025-11-26 15:07:04] Checking for CVMFS
[2025-11-26 15:07:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:07:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:07:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:07:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:07:04] 2.11.3.0 1823698 29027 203740 153337 0 543 32910043 45568000 9148 130560 0 198162108 99.804 118823728 20935 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-26 15:07:04] CVMFS is ok
[2025-11-26 15:07:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:07:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:07:04] Further information can be found at the LHC@home message board.
[2025-11-26 15:07:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:07:04] Checking for apptainer binary...
[2025-11-26 15:07:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:07:04] Running /usr/bin/apptainer --version
[2025-11-26 15:07:04] apptainer version 1.4.1-1.el9
[2025-11-26 15:07:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:07:04] wns0016.triumf.lcg
[2025-11-26 15:07:04] apptainer works
[2025-11-26 15:07:04] Set ATHENA_PROC_NUMBER=8
[2025-11-26 15:07:04] Set ATHENA_CORE_NUMBER=8
[2025-11-26 15:07:04] Starting ATLAS job with PandaID=6897139614
[2025-11-26 15:07:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:13:40]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | ..............................
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . Timing measurements:
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . get job = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . initial setup = 4 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . payload setup = 6 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . stage-in = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . payload execution = 202 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . stage-out = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . log creation = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | ..............................
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 15:13:40] 2025-11-26 23:13:05,814 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897139614/pilotlog.txt
[2025-11-26 15:13:40] 2025-11-26 23:13:05,888 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-26 15:13:40] - Log from pilotlog.txt -
[2025-11-26 15:13:40] 2025-11-26 23:13:05,779 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897139614/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:13:40] 2025-11-26 23:13:05,780 | INFO     | extracted standard info from prmon json
[2025-11-26 15:13:40] 2025-11-26 23:13:05,780 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:13:40] 2025-11-26 23:13:05,780 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:13:40] 2025-11-26 23:13:05,811 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 15:13:40] 2025-11-26 23:13:05,811 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 15:13:40] 2025-11-26 23:13:05,812 | WARNING  | wrong length of table data, x=[1764198467.0, 1764198528.0, 1764198589.0, 1764198650.0], y=[1341.0, 745326.0, 396213.0, 739727.0] (must be same and length>=4)
[2025-11-26 15:13:40] 2025-11-26 23:13:05,812 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | ..............................
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . Timing measurements:
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . get job = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . initial setup = 4 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . payload setup = 6 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . stage-in = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . payload execution = 202 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . stage-out = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . log creation = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | ..............................
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 15:13:40] 2025-11-26 23:13:05,814 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897139614/pilotlog.txt
[2025-11-26 15:13:40] 2025-11-26 23:13:05,888 | WARNING  | 
[2025-11-26 15:13:40] [begin log extracts]
[2025-11-26 15:13:40] - Log from pilotlog.txt -
[2025-11-26 15:13:40] 2025-11-26 23:13:05,779 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897139614/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:13:40] 2025-11-26 23:13:05,780 | INFO     | extracted standard info from prmon json
[2025-11-26 15:13:40] 2025-11-26 23:13:05,780 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:13:40] 2025-11-26 23:13:05,780 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:13:40] 2025-11-26 23:13:05,811 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 15:13:40] 2025-11-26 23:13:05,811 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 15:13:40] 2025-11-26 23:13:05,812 | WARNING  | wrong length of table data, x=[1764198467.0, 1764198528.0, 1764198589.0, 1764198650.0], y=[1341.0, 745326.0, 396213.0, 739727.0] (must be same and length>=4)
[2025-11-26 15:13:40] 2025-11-26 23:13:05,812 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | ..............................
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . Timing measurements:
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . get job = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . initial setup = 4 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . payload setup = 6 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . stage-in = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . payload execution = 202 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . stage-out = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | . log creation = 0 s
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | ..............................
[2025-11-26 15:13:40] 2025-11-26 23:13:05,813 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-26 15:13:40] 2025-11-26 23:13:05,814 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897139614/pilotlog.txt
[2025-11-26 15:13:40] [end log extracts]
[2025-11-26 15:13:40] 2025-11-26 23:13:05,888 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-26 15:13:40] 2025-11-26 23:13:05,889 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-26 15:13:40] 2025-11-26 23:13:06,094 | INFO     | time since job start (349s) is within the limit (172800.0s)
[2025-11-26 15:13:40] 2025-11-26 23:13:06,326 | INFO     | 
[2025-11-26 15:13:40] 2025-11-26 23:13:06,327 | INFO     | job summary report
[2025-11-26 15:13:40] 2025-11-26 23:13:06,327 | INFO     | --------------------------------------------------
[2025-11-26 15:13:40] 2025-11-26 23:13:06,327 | INFO     | PanDA job id: 6897139614
[2025-11-26 15:13:40] 2025-11-26 23:13:06,327 | INFO     | task id: 47556161
[2025-11-26 15:13:40] 2025-11-26 23:13:06,327 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-26 15:10:59,164 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-26 15:13:40] 2025-11-26 23:13:06,327 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-26 15:13:40] 2025-11-26 23:13:06,327 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | pilot state: failed 
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | transexitcode: 65
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | exeerrorcode: 65
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | exitcode: 65
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | cpuconsumptiontime: 56 s
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | nevents: 0
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | neventsw: 0
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | pid: 36836
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | pgrp: 36836
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | corecount: 8
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | event service: False
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | sizes: {0: 2284262, 5: 2284524, 11: 2284580, 210: 2309998, 212: 2314316, 333: 2314482}
[2025-11-26 15:13:40] 2025-11-26 23:13:06,328 | INFO     | --------------------------------------------------
[2025-11-26 15:13:40] 2025-11-26 23:13:06,329 | INFO     | 
[2025-11-26 15:13:40] 2025-11-26 23:13:06,329 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-26 15:13:40] 2025-11-26 23:13:06,568 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,568 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,568 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,568 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,569 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,570 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:13:40] 2025-11-26 23:13:06,570 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,570 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:13:40] 2025-11-26 23:13:06,570 | INFO     | job 6897139614 has completed (purged errors)
[2025-11-26 15:13:40] 2025-11-26 23:13:06,570 | INFO     | overall cleanup function is called
[2025-11-26 15:13:40] 2025-11-26 23:13:07,635 | INFO     | --- collectZombieJob: --- 10, [36836]
[2025-11-26 15:13:40] 2025-11-26 23:13:07,635 | INFO     | zombie collector waiting for pid 36836
[2025-11-26 15:13:40] 2025-11-26 23:13:07,635 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:13:40] 2025-11-26 23:13:07,635 | INFO     | collected zombie processes
[2025-11-26 15:13:40] 2025-11-26 23:13:07,635 | INFO     | will attempt to kill all subprocesses of pid=36836
[2025-11-26 15:13:40] 2025-11-26 23:13:08,577 | INFO     | process IDs to be killed: [36836] (in reverse order)
[2025-11-26 15:13:40] 2025-11-26 23:13:08,726 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:13:40] 2025-11-26 23:13:08,726 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:13:40] 2025-11-26 23:13:08,731 | INFO     | did not find any defunct processes belonging to 36836
[2025-11-26 15:13:40] 2025-11-26 23:13:08,735 | INFO     | did not find any defunct processes belonging to 36836
[2025-11-26 15:13:40] 2025-11-26 23:13:08,736 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:13:40] 2025-11-26 23:13:08,736 | INFO     | ready for new job
[2025-11-26 15:13:40] 2025-11-26 23:13:08,736 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:13:40] 2025-11-26 23:13:08,739 | INFO     | ***************************************
[2025-11-26 15:13:40] 2025-11-26 23:13:08,739 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:13:40] 2025-11-26 23:13:08,739 | INFO     | ***************************************
[2025-11-26 15:13:40] 2025-11-26 23:13:08,739 | INFO     | 
[2025-11-26 15:13:40] 2025-11-26 23:13:08,740 | INFO     | architecture information:
[2025-11-26 15:13:40] 2025-11-26 23:13:08,741 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:13:40] 2025-11-26 23:13:08,762 | INFO     | cat /etc/os-release:
[2025-11-26 15:13:40] NAME="CentOS Linux"
[2025-11-26 15:13:40] VERSION="7 (Core)"
[2025-11-26 15:13:40] ID="centos"
[2025-11-26 15:13:40] ID_LIKE="rhel fedora"
[2025-11-26 15:13:40] VERSION_ID="7"
[2025-11-26 15:13:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:13:40] ANSI_COLOR="0;31"
[2025-11-26 15:13:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:13:40] HOME_URL="https://www.centos.org/"
[2025-11-26 15:13:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:13:40] 
[2025-11-26 15:13:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:13:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:13:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:13:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:13:40] 
[2025-11-26 15:13:40] 2025-11-26 23:13:08,762 | INFO     | ***************************************
[2025-11-26 15:13:40] 2025-11-26 23:13:09,266 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-26 15:13:40] 2025-11-26 23:13:09,315 | INFO     | sufficient remaining disk space (1331618119680 B)
[2025-11-26 15:13:40] 2025-11-26 23:13:09,315 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:13:40] 2025-11-26 23:13:09,315 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:13:40] 2025-11-26 23:13:09,315 | INFO     | update_server=False
[2025-11-26 15:13:40] 2025-11-26 23:13:09,315 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:13:40] 2025-11-26 23:13:09,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:13:40] 2025-11-26 23:13:09,353 | INFO     | all payload control threads have been joined
[2025-11-26 15:13:40] 2025-11-26 23:13:09,355 | INFO     | all data control threads have been joined
[2025-11-26 15:13:40] 2025-11-26 23:13:09,454 | INFO     | all job control threads have been joined
[2025-11-26 15:13:40] 2025-11-26 23:13:09,468 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 15:13:40] 2025-11-26 23:13:09,468 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 15:13:40] 2025-11-26 23:13:09,468 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:13:40] 2025-11-26 23:13:09,468 | INFO     | will abort loop
[2025-11-26 15:13:40] 2025-11-26 23:13:10,320 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:10,359 | INFO     | [payload] control thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:10,361 | INFO     | [data] control thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:10,366 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:10,460 | INFO     | [job] control thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:10,491 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:10,636 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:10,641 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:13:40] 2025-11-26 23:13:10,727 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:10,975 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:11,136 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:11,218 | INFO     | [job] validate thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:11,431 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:13:40] 2025-11-26 23:13:11,475 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:11,781 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:12,436 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:12,648 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:13,331 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:13:40] 2025-11-26 23:13:17,794 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:13:40] 2025-11-26 23:13:18,150 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139885982713664)>', '<ExcThread(monitor, started 139885449037568)>']
[2025-11-26 15:13:40] 2025-11-26 23:13:23,178 | INFO     | all workflow threads have been joined
[2025-11-26 15:13:40] 2025-11-26 23:13:23,178 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:13:40] 2025-11-26 23:13:23,178 | INFO     | traces error code: 0
[2025-11-26 15:13:40] 2025-11-26 23:13:23,179 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:13:40] 2025-11-26 23:13:39,690 | INFO     | PID=30298 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 15:13:40] 2025-11-26 23:13:39,690 | INFO     | .. there are 12 such processes running
[2025-11-26 15:13:40] 2025-11-26 23:13:39,692 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:13:40] 2025-11-26 23:13:39,692 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:13:40] 2025-11-26 23:13:39,692 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:13:40] 2025-11-26 23:13:39,692 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:13:40] 2025-11-26 23:13:39,692 | INFO     | [monitor] control thread has ended
[2025-11-26 15:13:40] 2025-11-26 23:13:40,114 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:13:40] 2025-11-26 23:13:40,118 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:13:40] 2025-11-26 23:13:40,120 [wrapper] pilotpid: 30298
[2025-11-26 15:13:40] 2025-11-26 23:13:40,122 [wrapper] Pilot exit status: 0
[2025-11-26 15:13:40] 2025-11-26 23:13:40,205 [wrapper] pandaids: 6897139614
[2025-11-26 15:13:40] 2025-11-26 23:13:40,249 [wrapper] cleanup supervisor_pilot   30304 30299
[2025-11-26 15:13:40] 2025-11-26 23:13:40,257 [wrapper] Test setup, not cleaning
[2025-11-26 15:13:40] 2025-11-26 23:13:40,260 [wrapper] apfmon messages muted
[2025-11-26 15:13:40] 2025-11-26 23:13:40,262 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:13:40] 2025-11-26 23:13:40,263 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:13:40]  *** Error codes and diagnostics ***
[2025-11-26 15:13:40]     "exeErrorCode": 65,
[2025-11-26 15:13:40]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-26 15:13:40]     "pilotErrorCode": 1305,
[2025-11-26 15:13:40]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-26 15:13:40]  *** Listing of results directory ***
[2025-11-26 15:13:40] total 403408
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc    576529 Nov 25 08:48 pilot3.tar.gz
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc      5112 Nov 25 08:55 queuedata.json
[2025-11-26 15:13:40] -rwx------. 1 boinc boinc     36292 Nov 25 08:56 runpilot2-wrapper.sh
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc       100 Nov 26 15:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:13:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 15:07 run_atlas
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc       105 Nov 26 15:07 job.xml
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc      6445 Nov 26 15:07 init_data.xml
[2025-11-26 15:13:40] -rw-r--r--. 2 boinc boinc 408853195 Nov 26 15:07 EVNT.47483658._002190.pool.root.1
[2025-11-26 15:13:40] -rw-r--r--. 2 boinc boinc     15847 Nov 26 15:07 start_atlas.sh
[2025-11-26 15:13:40] drwxrwx--x. 2 boinc boinc      4096 Nov 26 15:07 shared
[2025-11-26 15:13:40] -rw-r--r--. 2 boinc boinc    590114 Nov 26 15:07 input.tar.gz
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc         0 Nov 26 15:07 boinc_lockfile
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc      2786 Nov 26 15:07 pandaJob.out
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc    991546 Nov 26 15:07 agis_schedconf.cvmfs.json
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc   1516240 Nov 26 15:07 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:13:40] drwx------. 5 boinc boinc      4096 Nov 26 15:07 pilot3
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc       524 Nov 26 15:10 boinc_task_state.xml
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc       994 Nov 26 15:11 memory_monitor_summary.json
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc     50879 Nov 26 15:11 log.47556161._001737.job.log.tgz.1
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc     10329 Nov 26 15:13 heartbeat.json
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc      8192 Nov 26 15:13 boinc_mmap_file
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc        23 Nov 26 15:13 wrapper_checkpoint.txt
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc        95 Nov 26 15:13 pilot_heartbeat.json
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc       821 Nov 26 15:13 pilotlog.txt
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc    110982 Nov 26 15:13 log.47556161._001737.job.log.1
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc       186 Nov 26 15:13 output.list
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc       620 Nov 26 15:13 runtime_log
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc    184320 Nov 26 15:13 result.tar.gz
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc      8634 Nov 26 15:13 runtime_log.err
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc       646 Nov 26 15:13 0YaMDmTWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLXJKDmpGMeQo.diag
[2025-11-26 15:13:40] -rw-r--r--. 1 boinc boinc     22474 Nov 26 15:13 stderr.txt
[2025-11-26 15:13:40] No HITS result produced
[2025-11-26 15:13:40]  *** Contents of shared directory: ***
[2025-11-26 15:13:40] total 400052
[2025-11-26 15:13:40] -rw-r--r--. 2 boinc boinc 408853195 Nov 26 15:07 ATLAS.root_0
[2025-11-26 15:13:40] -rw-r--r--. 2 boinc boinc     15847 Nov 26 15:07 start_atlas.sh
[2025-11-26 15:13:40] -rw-r--r--. 2 boinc boinc    590114 Nov 26 15:07 input.tar.gz
[2025-11-26 15:13:40] -rw-------. 1 boinc boinc    184320 Nov 26 15:13 result.tar.gz
15:13:41 (26651): run_atlas exited; CPU time 56.333975
15:13:41 (26651): called boinc_finish(0)

</stderr_txt>
]]>

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