Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:38:44 (232010): wrapper (7.7.26015): starting
18:38:44 (232010): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:38:44] Arguments: --nthreads 8
[2025-11-26 18:38:44] Threads: 8
[2025-11-26 18:38:44] Checking for CVMFS
[2025-11-26 18:38:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:38:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:38:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:38:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:38:45] 2.13.3.0 1933508 27922 335952 153340 3 191 31219301 32503808 59788 16776704 0 175989223 99.538 202278172 37380 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 18:38:45] CVMFS is ok
[2025-11-26 18:38:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:38:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:38:45] Further information can be found at the LHC@home message board.
[2025-11-26 18:38:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:38:45] Checking for apptainer binary...
[2025-11-26 18:38:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:38:45] Running /usr/bin/apptainer --version
[2025-11-26 18:38:45] apptainer version 1.4.4-1.el9
[2025-11-26 18:38:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:38:45] c7-3-16.aglt2.org
[2025-11-26 18:38:45] apptainer works
[2025-11-26 18:38:45] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:38:45] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:38:45] Starting ATLAS job with PandaID=6897881241
[2025-11-26 18:38:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:53:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:53:20] 2025-11-28 01:52:40,828 | INFO     | monitor loop #5954: job 0:6897881241 is in state 'finished'
[2025-11-27 20:53:20] 2025-11-28 01:52:40,828 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:53:20] 2025-11-28 01:52:42,338 | INFO     | time since job start (94409s) is within the limit (172800.0s)
[2025-11-27 20:53:20] 2025-11-28 01:52:43,354 | INFO     | monitor loop #5955: job 0:6897881241 is in state 'finished'
[2025-11-27 20:53:20] 2025-11-28 01:52:43,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:53:20] 2025-11-28 01:52:44,349 | INFO     | time since job start (94411s) is within the limit (172800.0s)
[2025-11-27 20:53:20] 2025-11-28 01:52:45,883 | INFO     | monitor loop #5956: job 0:6897881241 is in state 'finished'
[2025-11-27 20:53:20] 2025-11-28 01:52:45,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:53:20] 2025-11-28 01:52:46,958 | INFO     | PID=236997 has CPU usage=18.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:53:20] 2025-11-28 01:52:46,958 | INFO     | .. there are 91 such processes running
[2025-11-27 20:53:20] 2025-11-28 01:52:47,049 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 20:53:20] 2025-11-28 01:52:47,054 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3269.7019791666676
[2025-11-27 20:53:20] 2025-11-28 01:52:47,068 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897881241/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:53:20] 2025-11-28 01:52:47,068 | INFO     | extracted standard info from prmon json
[2025-11-27 20:53:20] 2025-11-28 01:52:47,068 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:53:20] 2025-11-28 01:52:47,069 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:53:20] 2025-11-28 01:52:47,087 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:53:20] 2025-11-28 01:52:47,088 | INFO     | sum of square deviations: 1148035363314.7224
[2025-11-27 20:53:20] 2025-11-28 01:52:47,134 | INFO     | sum of deviations: 4985613543220.51
[2025-11-27 20:53:20] 2025-11-28 01:52:47,134 | INFO     | mean x: 1764247561.4957983
[2025-11-27 20:53:20] 2025-11-28 01:52:47,134 | INFO     | mean y: 2984692.4634776986
[2025-11-27 20:53:20] 2025-11-28 01:52:47,134 | INFO     | intersect: -7658675233.055658
[2025-11-27 20:53:20] 2025-11-28 01:52:47,136 | INFO     | chi2: 13.941460426712577
[2025-11-27 20:53:20] 2025-11-28 01:52:47,137 | INFO     | sum of square deviations: 1136940124096.0103
[2025-11-27 20:53:20] 2025-11-28 01:52:47,185 | INFO     | sum of deviations: 5512701367874.597
[2025-11-27 20:53:20] 2025-11-28 01:52:47,185 | INFO     | mean x: 1764247408.997406
[2025-11-27 20:53:20] 2025-11-28 01:52:47,186 | INFO     | mean y: 2991935.8975356678
[2025-11-27 20:53:20] 2025-11-28 01:52:47,186 | INFO     | intersect: -8551345182.411351
[2025-11-27 20:53:20] 2025-11-28 01:52:47,187 | INFO     | chi2: 10.854310364391159
[2025-11-27 20:53:20] 2025-11-28 01:52:47,187 | INFO     | current chi2=10.854310364391159 (change=22.143663345385793 %)
[2025-11-27 20:53:20] 2025-11-28 01:52:47,187 | INFO     | right removable region: 1541
[2025-11-27 20:53:20] 2025-11-28 01:52:47,188 | INFO     | sum of square deviations: 1136939656226.011
[2025-11-27 20:53:20] 2025-11-28 01:52:47,236 | INFO     | sum of deviations: 4377872814595.379
[2025-11-27 20:53:20] 2025-11-28 01:52:47,236 | INFO     | mean x: 1764247713.997406
[2025-11-27 20:53:20] 2025-11-28 01:52:47,236 | INFO     | mean y: 2993043.8443579767
[2025-11-27 20:53:20] 2025-11-28 01:52:47,237 | INFO     | intersect: -6790377266.554869
[2025-11-27 20:53:20] 2025-11-28 01:52:47,238 | INFO     | chi2: 10.283699692244381
[2025-11-27 20:53:20] 2025-11-28 01:52:47,238 | INFO     | current chi2=10.283699692244381 (change=26.236567924115988 %)
[2025-11-27 20:53:20] 2025-11-28 01:52:47,239 | INFO     | sum of square deviations: 1125915765352.2473
[2025-11-27 20:53:20] 2025-11-28 01:52:47,286 | INFO     | sum of deviations: 4104696851864.3315
[2025-11-27 20:53:20] 2025-11-28 01:52:47,286 | INFO     | mean x: 1764247866.4983735
[2025-11-27 20:53:20] 2025-11-28 01:52:47,287 | INFO     | mean y: 2996820.1366297984
[2025-11-27 20:53:20] 2025-11-28 01:52:47,287 | INFO     | intersect: -6428836613.920172
[2025-11-27 20:53:20] 2025-11-28 01:52:47,288 | INFO     | chi2: 9.540871395663194
[2025-11-27 20:53:20] 2025-11-28 01:52:47,288 | INFO     | current chi2=9.540871395663194 (change=7.2233565624383544 %)
[2025-11-27 20:53:20] 2025-11-28 01:52:47,288 | INFO     | left removable region: 20
[2025-11-27 20:53:20] 2025-11-28 01:52:47,289 | INFO     | sum of square deviations: 1091119121888.2456
[2025-11-27 20:53:20] 2025-11-28 01:52:47,336 | INFO     | sum of deviations: 4433266941197.444
[2025-11-27 20:53:20] 2025-11-28 01:52:47,336 | INFO     | mean x: 1764247988.5016437
[2025-11-27 20:53:20] 2025-11-28 01:52:47,336 | INFO     | mean y: 3009727.4174884944
[2025-11-27 20:53:20] 2025-11-28 01:52:47,336 | INFO     | intersect: -7165210613.147221
[2025-11-27 20:53:20] 2025-11-28 01:52:47,338 | INFO     | chi2: 5.645327883633723
[2025-11-27 20:53:20] 2025-11-28 01:52:47,338 | INFO     | current memory leak: 4.06 B/s (using 1521 data points, chi2=5.65)
[2025-11-27 20:53:20] 2025-11-28 01:52:47,339 | INFO     | could have reported an average CPU frequency of 3277 MHz (55 samples)
[2025-11-27 20:53:20] 2025-11-28 01:52:47,339 | INFO     | ..............................
[2025-11-27 20:53:20] 2025-11-28 01:52:47,339 | INFO     | . Timing measurements:
[2025-11-27 20:53:20] 2025-11-28 01:52:47,339 | INFO     | . get job = 0 s
[2025-11-27 20:53:20] 2025-11-28 01:52:47,340 | INFO     | . initial setup = 3 s
[2025-11-27 20:53:20] 2025-11-28 01:52:47,340 | INFO     | . payload setup = 17 s
[2025-11-27 20:53:20] 2025-11-28 01:52:47,340 | INFO     | . stage-in = 0 s
[2025-11-27 20:53:20] 2025-11-28 01:52:47,340 | INFO     | . payload execution = 94348 s
[2025-11-27 20:53:20] 2025-11-28 01:52:47,340 | INFO     | . stage-out = 6 s
[2025-11-27 20:53:20] 2025-11-28 01:52:47,340 | INFO     | . log creation = 0 s
[2025-11-27 20:53:20] 2025-11-28 01:52:47,340 | INFO     | ..............................
[2025-11-27 20:53:20] 2025-11-28 01:52:47,421 | INFO     | 
[2025-11-27 20:53:20] 2025-11-28 01:52:47,421 | INFO     | job summary report
[2025-11-27 20:53:20] 2025-11-28 01:52:47,421 | INFO     | --------------------------------------------------
[2025-11-27 20:53:20] 2025-11-28 01:52:47,421 | INFO     | PanDA job id: 6897881241
[2025-11-27 20:53:20] 2025-11-28 01:52:47,421 | INFO     | task id: 47556173
[2025-11-27 20:53:20] 2025-11-28 01:52:47,421 | INFO     | errors: (none)
[2025-11-27 20:53:20] 2025-11-28 01:52:47,421 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:53:20] 2025-11-28 01:52:47,421 | INFO     | pilot state: finished 
[2025-11-27 20:53:20] 2025-11-28 01:52:47,421 | INFO     | transexitcode: 0
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | exeerrorcode: 0
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | exeerrordiag: 
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | exitcode: 0
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | exitmsg: OK
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | cpuconsumptiontime: 196282 s
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | nevents: 1000
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | neventsw: 0
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | pid: 253132
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | pgrp: 253132
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | corecount: 8
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | event service: False
[2025-11-27 20:53:20] 2025-11-28 01:52:47,422 | INFO     | sizes: {0: 2284264, 11: 2284554, 94369: 2354612, 94376: 2363634, 94379: 2363690, 94390: 2363936}
[2025-11-27 20:53:20] 2025-11-28 01:52:47,423 | INFO     | --------------------------------------------------
[2025-11-27 20:53:20] 2025-11-28 01:52:47,423 | INFO     | 
[2025-11-27 20:53:20] 2025-11-28 01:52:47,423 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 20:53:20] 2025-11-28 01:52:47,473 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,473 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,473 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,473 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,473 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,473 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,473 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,473 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,473 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:53:20] 2025-11-28 01:52:47,474 | INFO     | job 6897881241 has completed (purged errors)
[2025-11-27 20:53:20] 2025-11-28 01:52:47,475 | INFO     | overall cleanup function is called
[2025-11-27 20:53:20] 2025-11-28 01:52:48,491 | INFO     | --- collectZombieJob: --- 10, [253132]
[2025-11-27 20:53:20] 2025-11-28 01:52:48,491 | INFO     | zombie collector waiting for pid 253132
[2025-11-27 20:53:20] 2025-11-28 01:52:48,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:53:20] 2025-11-28 01:52:48,492 | INFO     | collected zombie processes
[2025-11-27 20:53:20] 2025-11-28 01:52:48,492 | INFO     | will attempt to kill all subprocesses of pid=253132
[2025-11-27 20:53:20] 2025-11-28 01:52:49,262 | INFO     | process IDs to be killed: [253132] (in reverse order)
[2025-11-27 20:53:20] 2025-11-28 01:52:49,494 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:53:20] 2025-11-28 01:52:49,495 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:53:20] 2025-11-28 01:52:49,527 | INFO     | did not find any defunct processes belonging to 253132
[2025-11-27 20:53:20] 2025-11-28 01:52:49,558 | INFO     | did not find any defunct processes belonging to 253132
[2025-11-27 20:53:20] 2025-11-28 01:52:49,559 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:53:20] 2025-11-28 01:52:49,559 | INFO     | ready for new job
[2025-11-27 20:53:20] 2025-11-28 01:52:49,559 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:53:20] 2025-11-28 01:52:49,565 | INFO     | ***************************************
[2025-11-27 20:53:20] 2025-11-28 01:52:49,566 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:53:20] 2025-11-28 01:52:49,566 | INFO     | ***************************************
[2025-11-27 20:53:20] 2025-11-28 01:52:49,566 | INFO     | 
[2025-11-27 20:53:20] 2025-11-28 01:52:49,571 | INFO     | architecture information:
[2025-11-27 20:53:20] 2025-11-28 01:52:49,571 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:53:20] 2025-11-28 01:52:49,584 | INFO     | cat /etc/os-release:
[2025-11-27 20:53:20] NAME="CentOS Linux"
[2025-11-27 20:53:20] VERSION="7 (Core)"
[2025-11-27 20:53:20] ID="centos"
[2025-11-27 20:53:20] ID_LIKE="rhel fedora"
[2025-11-27 20:53:20] VERSION_ID="7"
[2025-11-27 20:53:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:53:20] ANSI_COLOR="0;31"
[2025-11-27 20:53:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:53:20] HOME_URL="https://www.centos.org/"
[2025-11-27 20:53:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:53:20] 
[2025-11-27 20:53:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:53:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:53:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:53:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:53:20] 
[2025-11-27 20:53:20] 2025-11-28 01:52:49,585 | INFO     | ***************************************
[2025-11-27 20:53:20] 2025-11-28 01:52:50,088 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 20:53:20] 2025-11-28 01:52:50,187 | INFO     | sufficient remaining disk space (87533027328 B)
[2025-11-27 20:53:20] 2025-11-28 01:52:50,188 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:53:20] 2025-11-28 01:52:50,188 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:53:20] 2025-11-28 01:52:50,188 | INFO     | update_server=False
[2025-11-27 20:53:20] 2025-11-28 01:52:50,188 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:53:20] 2025-11-28 01:52:50,194 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:53:20] 2025-11-28 01:52:50,194 | INFO     | aborting loop
[2025-11-27 20:53:20] 2025-11-28 01:52:50,483 | INFO     | all data control threads have been joined
[2025-11-27 20:53:20] 2025-11-28 01:52:50,483 | INFO     | all job control threads have been joined
[2025-11-27 20:53:20] 2025-11-28 01:52:50,509 | INFO     | all payload control threads have been joined
[2025-11-27 20:53:20] 2025-11-28 01:52:50,932 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:53:20] 2025-11-28 01:52:51,015 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:53:20] 2025-11-28 01:52:51,194 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:51,204 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:51,335 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:51,489 | INFO     | [data] control thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:51,490 | INFO     | [job] control thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:51,515 | INFO     | [payload] control thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:51,726 | INFO     | [job] validate thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:51,781 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:51,825 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:52,159 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:52,352 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:52,439 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:53:20] 2025-11-28 01:52:52,664 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:52,686 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:52,938 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:53,445 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:55,026 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:53:20] 2025-11-28 01:52:56,775 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:53:20] 2025-11-28 01:52:57,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140210660800320)>', '<ExcThread(monitor, started 140209802962688)>']
[2025-11-27 20:53:20] 2025-11-28 01:53:02,313 | INFO     | all workflow threads have been joined
[2025-11-27 20:53:20] 2025-11-28 01:53:02,313 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:53:20] 2025-11-28 01:53:02,314 | INFO     | traces error code: 0
[2025-11-27 20:53:20] 2025-11-28 01:53:02,314 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:53:20] 2025-11-28 01:53:19,981 | INFO     | PID=236997 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 20:53:20] 2025-11-28 01:53:19,982 | INFO     | .. there are 91 such processes running
[2025-11-27 20:53:20] 2025-11-28 01:53:19,982 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:53:20] 2025-11-28 01:53:19,982 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:53:20] 2025-11-28 01:53:19,982 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:53:20] 2025-11-28 01:53:19,982 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:53:20] 2025-11-28 01:53:19,982 | INFO     | [monitor] control thread has ended
[2025-11-27 20:53:20] 2025-11-28 01:53:20,192 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:53:20] 2025-11-28 01:53:20,195 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:53:20] 2025-11-28 01:53:20,197 [wrapper] pilotpid: 236997
[2025-11-27 20:53:20] 2025-11-28 01:53:20,199 [wrapper] Pilot exit status: 0
[2025-11-27 20:53:20] 2025-11-28 01:53:20,213 [wrapper] pandaids: 6897881241
[2025-11-27 20:53:20] 2025-11-28 01:53:20,384 [wrapper] cleanup supervisor_pilot 3983706 236998
[2025-11-27 20:53:20] 2025-11-28 01:53:20,386 [wrapper] Test setup, not cleaning
[2025-11-27 20:53:20] 2025-11-28 01:53:20,389 [wrapper] apfmon messages muted
[2025-11-27 20:53:20] 2025-11-28 01:53:20,391 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:53:20] 2025-11-28 01:53:20,393 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:53:20]  *** Error codes and diagnostics ***
[2025-11-27 20:53:20]     "exeErrorCode": 0,
[2025-11-27 20:53:20]     "exeErrorDiag": "",
[2025-11-27 20:53:20]     "pilotErrorCode": 0,
[2025-11-27 20:53:20]     "pilotErrorDiag": "",
[2025-11-27 20:53:20]  *** Listing of results directory ***
[2025-11-27 20:53:20] total 1334924
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 20:53:20] -rwx------. 1 boincer umatlas     36292 Nov 25 21:07 runpilot2-wrapper.sh
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:07 queuedata.json
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas       100 Nov 26 18:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:53:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 18:38 run_atlas
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas       105 Nov 26 18:38 job.xml
[2025-11-27 20:53:20] -rw-r--r--. 2 boincer umatlas 409748043 Nov 26 18:38 EVNT.47483658._003144.pool.root.1
[2025-11-27 20:53:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:38 start_atlas.sh
[2025-11-27 20:53:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 18:38 shared
[2025-11-27 20:53:20] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 18:38 input.tar.gz
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas         0 Nov 26 18:38 boinc_lockfile
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 18:38 pandaJob.out
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas        57 Nov 26 18:38 setup.sh.local
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas    991538 Nov 26 18:39 agis_schedconf.cvmfs.json
[2025-11-27 20:53:20] drwx------. 5 boincer umatlas      4096 Nov 26 18:39 pilot3
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas       533 Nov 27 20:36 boinc_task_state.xml
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas      6946 Nov 27 20:45 init_data.xml
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas 923573012 Nov 27 20:51 HITS.47556173._001010.pool.root.1
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas      1073 Nov 27 20:52 memory_monitor_summary.json
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas   2568759 Nov 27 20:52 log.47556173._001010.job.log.tgz.1
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas        95 Nov 27 20:52 pilot_heartbeat.json
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas      8629 Nov 27 20:52 heartbeat.json
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:53 boinc_mmap_file
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:53 wrapper_checkpoint.txt
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas       822 Nov 27 20:53 pilotlog.txt
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas  12289734 Nov 27 20:53 log.47556173._001010.job.log.1
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas       353 Nov 27 20:53 output.list
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:53 runtime_log
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas  14878720 Nov 27 20:53 result.tar.gz
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 20:53 runtime_log.err
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas       666 Nov 27 20:53 M0sKDmB7Ji8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1hMKDmlpwLnm.diag
[2025-11-27 20:53:20] -rw-r--r--. 1 boincer umatlas     21607 Nov 27 20:53 stderr.txt
[2025-11-27 20:53:20] HITS file was successfully produced:
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas 923573012 Nov 27 20:51 shared/HITS.pool.root.1
[2025-11-27 20:53:20]  *** Contents of shared directory: ***
[2025-11-27 20:53:20] total 1317212
[2025-11-27 20:53:20] -rw-r--r--. 2 boincer umatlas 409748043 Nov 26 18:38 ATLAS.root_0
[2025-11-27 20:53:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:38 start_atlas.sh
[2025-11-27 20:53:20] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 18:38 input.tar.gz
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas 923573012 Nov 27 20:51 HITS.pool.root.1
[2025-11-27 20:53:20] -rw-------. 1 boincer umatlas  14878720 Nov 27 20:53 result.tar.gz
20:53:21 (232010): run_atlas exited; CPU time 200470.403292
20:53:21 (232010): called boinc_finish(0)

</stderr_txt>
]]>

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