Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:35:05 (10281): wrapper (7.7.26015): starting
02:35:05 (10281): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 02:35:05] Arguments: --nthreads 8
[2025-11-29 02:35:05] Threads: 8
[2025-11-29 02:35:05] Checking for CVMFS
[2025-11-29 02:35:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 02:35:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 02:35:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 02:35:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 02:35:08] 2.11.2.0 942 175842 127884 153425 1 85 18769495 25165825 2358 130560 12 61422664 99.902 32450086 2289 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 02:35:08] CVMFS is ok
[2025-11-29 02:35:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 02:35:08] Checking for apptainer binary...
[2025-11-29 02:35:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 02:35:08] Running /usr/bin/apptainer --version
[2025-11-29 02:35:08] apptainer version 1.3.2-1.el7
[2025-11-29 02:35:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 02:35:18] cg-vwn460.simple-grid.lan
[2025-11-29 02:35:18] apptainer works
[2025-11-29 02:35:18] Set ATHENA_PROC_NUMBER=8
[2025-11-29 02:35:18] Set ATHENA_CORE_NUMBER=8
[2025-11-29 02:35:18] Starting ATLAS job with PandaID=6897881088
[2025-11-29 02:35:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 00:41:02]  *** The last 200 lines of the pilot log: ***
[2025-11-30 00:41:02] 2025-11-29 23:40:00,049 | INFO     | monitor loop #5366: job 0:6897881088 is in state 'finished'
[2025-11-30 00:41:02] 2025-11-29 23:40:00,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:41:02] 2025-11-29 23:40:00,148 | INFO     | time since job start (79227s) is within the limit (172800.0s)
[2025-11-30 00:41:02] 2025-11-29 23:40:02,155 | INFO     | time since job start (79229s) is within the limit (172800.0s)
[2025-11-30 00:41:02] 2025-11-29 23:40:02,562 | INFO     | monitor loop #5367: job 0:6897881088 is in state 'finished'
[2025-11-30 00:41:02] 2025-11-29 23:40:02,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:41:02] 2025-11-29 23:40:04,167 | INFO     | time since job start (79231s) is within the limit (172800.0s)
[2025-11-30 00:41:02] 2025-11-29 23:40:05,067 | INFO     | monitor loop #5368: job 0:6897881088 is in state 'finished'
[2025-11-30 00:41:02] 2025-11-29 23:40:05,067 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:41:02] 2025-11-29 23:40:06,179 | INFO     | time since job start (79233s) is within the limit (172800.0s)
[2025-11-30 00:41:02] 2025-11-29 23:40:07,572 | INFO     | monitor loop #5369: job 0:6897881088 is in state 'finished'
[2025-11-30 00:41:02] 2025-11-29 23:40:07,572 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 00:41:02] 2025-11-29 23:40:08,185 | INFO     | time since job start (79235s) is within the limit (172800.0s)
[2025-11-30 00:41:02] 2025-11-29 23:40:08,336 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 00:41:02] 2025-11-29 23:40:08,337 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-11-30 00:41:02] 2025-11-29 23:40:08,339 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6897881088/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 00:41:02] 2025-11-29 23:40:08,340 | INFO     | extracted standard info from prmon json
[2025-11-30 00:41:02] 2025-11-29 23:40:08,340 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 00:41:02] 2025-11-29 23:40:08,340 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 00:41:02] 2025-11-29 23:40:08,375 | INFO     | fitting pss+swap vs Time
[2025-11-30 00:41:02] 2025-11-29 23:40:08,377 | INFO     | sum of square deviations: 664105385650.8209
[2025-11-30 00:41:02] 2025-11-29 23:40:08,448 | INFO     | sum of deviations: 2581147412531.3984
[2025-11-30 00:41:02] 2025-11-29 23:40:08,448 | INFO     | mean x: 1764420192.0411172
[2025-11-30 00:41:02] 2025-11-29 23:40:08,448 | INFO     | mean y: 2831266.4639255237
[2025-11-30 00:41:02] 2025-11-29 23:40:08,448 | INFO     | intersect: -6854858358.868588
[2025-11-30 00:41:02] 2025-11-29 23:40:08,462 | INFO     | chi2: 24.650516133523663
[2025-11-30 00:41:02] 2025-11-29 23:40:08,464 | INFO     | sum of square deviations: 656407585500.3796
[2025-11-30 00:41:02] 2025-11-29 23:40:08,531 | INFO     | sum of deviations: 3005648030246.9014
[2025-11-30 00:41:02] 2025-11-29 23:40:08,532 | INFO     | mean x: 1764420039.5451713
[2025-11-30 00:41:02] 2025-11-29 23:40:08,532 | INFO     | mean y: 2839674.9672897197
[2025-11-30 00:41:02] 2025-11-29 23:40:08,532 | INFO     | intersect: -8076325973.833757
[2025-11-30 00:41:02] 2025-11-29 23:40:08,540 | INFO     | chi2: 21.40052998124102
[2025-11-30 00:41:02] 2025-11-29 23:40:08,541 | INFO     | current chi2=21.40052998124102 (change=13.184251942955456 %)
[2025-11-30 00:41:02] 2025-11-29 23:40:08,541 | INFO     | right removable region: 1283
[2025-11-30 00:41:02] 2025-11-29 23:40:08,543 | INFO     | sum of square deviations: 656406766880.3806
[2025-11-30 00:41:02] 2025-11-29 23:40:08,607 | INFO     | sum of deviations: 2050369355527.5098
[2025-11-30 00:41:02] 2025-11-29 23:40:08,607 | INFO     | mean x: 1764420344.5451713
[2025-11-30 00:41:02] 2025-11-29 23:40:08,608 | INFO     | mean y: 2841779.8964174455
[2025-11-30 00:41:02] 2025-11-29 23:40:08,608 | INFO     | intersect: -5508547784.10541
[2025-11-30 00:41:02] 2025-11-29 23:40:08,609 | INFO     | chi2: 20.091870055369554
[2025-11-30 00:41:02] 2025-11-29 23:40:08,609 | INFO     | current chi2=20.091870055369554 (change=18.493106000139857 %)
[2025-11-30 00:41:02] 2025-11-29 23:40:08,609 | INFO     | left removable region: 10
[2025-11-30 00:41:02] 2025-11-29 23:40:08,611 | INFO     | sum of square deviations: 639680682097.2596
[2025-11-30 00:41:02] 2025-11-29 23:40:08,663 | INFO     | sum of deviations: 2097420345037.2014
[2025-11-30 00:41:02] 2025-11-29 23:40:08,663 | INFO     | mean x: 1764420314.0542026
[2025-11-30 00:41:02] 2025-11-29 23:40:08,663 | INFO     | mean y: 2861577.9245875883
[2025-11-30 00:41:02] 2025-11-29 23:40:08,663 | INFO     | intersect: -5782417182.973711
[2025-11-30 00:41:02] 2025-11-29 23:40:08,664 | INFO     | chi2: 12.569949390633644
[2025-11-30 00:41:02] 2025-11-29 23:40:08,665 | INFO     | current memory leak: 3.28 B/s (using 1273 data points, chi2=12.57)
[2025-11-30 00:41:02] 2025-11-29 23:40:08,666 | INFO     | could have reported an average CPU frequency of 2250 MHz (44 samples)
[2025-11-30 00:41:02] 2025-11-29 23:40:08,666 | INFO     | ..............................
[2025-11-30 00:41:02] 2025-11-29 23:40:08,666 | INFO     | . Timing measurements:
[2025-11-30 00:41:02] 2025-11-29 23:40:08,666 | INFO     | . get job = 0 s
[2025-11-30 00:41:02] 2025-11-29 23:40:08,666 | INFO     | . initial setup = 9 s
[2025-11-30 00:41:02] 2025-11-29 23:40:08,666 | INFO     | . payload setup = 163 s
[2025-11-30 00:41:02] 2025-11-29 23:40:08,666 | INFO     | . stage-in = 0 s
[2025-11-30 00:41:02] 2025-11-29 23:40:08,667 | INFO     | . payload execution = 78768 s
[2025-11-30 00:41:02] 2025-11-29 23:40:08,667 | INFO     | . stage-out = 6 s
[2025-11-30 00:41:02] 2025-11-29 23:40:08,667 | INFO     | . log creation = 1 s
[2025-11-30 00:41:02] 2025-11-29 23:40:08,667 | INFO     | ..............................
[2025-11-30 00:41:02] 2025-11-29 23:40:08,787 | INFO     | 
[2025-11-30 00:41:02] 2025-11-29 23:40:08,788 | INFO     | job summary report
[2025-11-30 00:41:02] 2025-11-29 23:40:08,788 | INFO     | --------------------------------------------------
[2025-11-30 00:41:02] 2025-11-29 23:40:08,788 | INFO     | PanDA job id: 6897881088
[2025-11-30 00:41:02] 2025-11-29 23:40:08,788 | INFO     | task id: 47556173
[2025-11-30 00:41:02] 2025-11-29 23:40:08,788 | INFO     | errors: (none)
[2025-11-30 00:41:02] 2025-11-29 23:40:08,788 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 00:41:02] 2025-11-29 23:40:08,788 | INFO     | pilot state: finished 
[2025-11-30 00:41:02] 2025-11-29 23:40:08,788 | INFO     | transexitcode: 0
[2025-11-30 00:41:02] 2025-11-29 23:40:08,788 | INFO     | exeerrorcode: 0
[2025-11-30 00:41:02] 2025-11-29 23:40:08,788 | INFO     | exeerrordiag: 
[2025-11-30 00:41:02] 2025-11-29 23:40:08,788 | INFO     | exitcode: 0
[2025-11-30 00:41:02] 2025-11-29 23:40:08,789 | INFO     | exitmsg: OK
[2025-11-30 00:41:02] 2025-11-29 23:40:08,789 | INFO     | cpuconsumptiontime: 295242 s
[2025-11-30 00:41:02] 2025-11-29 23:40:08,789 | INFO     | nevents: 1000
[2025-11-30 00:41:02] 2025-11-29 23:40:08,789 | INFO     | neventsw: 0
[2025-11-30 00:41:02] 2025-11-29 23:40:08,789 | INFO     | pid: 20667
[2025-11-30 00:41:02] 2025-11-29 23:40:08,789 | INFO     | pgrp: 20667
[2025-11-30 00:41:02] 2025-11-29 23:40:08,789 | INFO     | corecount: 8
[2025-11-30 00:41:02] 2025-11-29 23:40:08,789 | INFO     | event service: False
[2025-11-30 00:41:02] 2025-11-29 23:40:08,789 | INFO     | sizes: {0: 2284091, 1: 2284290, 12: 2284290, 22: 2284318, 33: 2284346, 44: 2284402, 55: 2284558, 65: 2284586, 76: 2284614, 87: 2284670, 93: 2284960, 97: 2285268, 7
[2025-11-30 00:41:02] 2025-11-29 23:40:08,789 | INFO     | --------------------------------------------------
[2025-11-30 00:41:02] 2025-11-29 23:40:08,789 | INFO     | 
[2025-11-30 00:41:02] 2025-11-29 23:40:08,790 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-30 00:41:02] 2025-11-29 23:40:09,442 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,442 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,442 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,443 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,443 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,443 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,443 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,443 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,443 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,443 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,443 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,443 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,443 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,444 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,444 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,444 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,444 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,444 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 00:41:02] 2025-11-29 23:40:09,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,444 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 00:41:02] 2025-11-29 23:40:09,444 | INFO     | job 6897881088 has completed (purged errors)
[2025-11-30 00:41:02] 2025-11-29 23:40:09,444 | INFO     | overall cleanup function is called
[2025-11-30 00:41:02] 2025-11-29 23:40:10,465 [wrapper] supervise_pilot (15 min periods counter: 89)
[2025-11-30 00:41:02] 2025-11-29 23:40:10,466 | INFO     | --- collectZombieJob: --- 10, [20667]
[2025-11-30 00:41:02] 2025-11-29 23:40:10,466 | INFO     | zombie collector waiting for pid 20667
[2025-11-30 00:41:02] 2025-11-29 23:40:10,466 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 00:41:02] 2025-11-29 23:40:10,466 | INFO     | collected zombie processes
[2025-11-30 00:41:02] 2025-11-29 23:40:10,466 | INFO     | will attempt to kill all subprocesses of pid=20667
[2025-11-30 00:41:02] 2025-11-29 23:40:10,629 | INFO     | process IDs to be killed: [20667] (in reverse order)
[2025-11-30 00:41:02] 2025-11-29 23:40:11,580 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 00:41:02] 2025-11-29 23:40:11,580 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 00:41:02] 2025-11-29 23:40:11,583 | INFO     | did not find any defunct processes belonging to 20667
[2025-11-30 00:41:02] 2025-11-29 23:40:11,591 | INFO     | did not find any defunct processes belonging to 20667
[2025-11-30 00:41:02] 2025-11-29 23:40:11,630 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 00:41:02] 2025-11-29 23:40:11,630 | INFO     | ready for new job
[2025-11-30 00:41:02] 2025-11-29 23:40:11,630 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 00:41:02] 2025-11-29 23:40:11,635 | INFO     | ***************************************
[2025-11-30 00:41:02] 2025-11-29 23:40:11,635 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 00:41:02] 2025-11-29 23:40:11,635 | INFO     | ***************************************
[2025-11-30 00:41:02] 2025-11-29 23:40:11,635 | INFO     | 
[2025-11-30 00:41:02] 2025-11-29 23:40:11,636 | INFO     | pilot is running in a VM
[2025-11-30 00:41:02] 2025-11-29 23:40:11,636 | INFO     | architecture information:
[2025-11-30 00:41:02] 2025-11-29 23:40:11,647 | INFO     | executing command: cat /etc/os-release
[2025-11-30 00:41:02] 2025-11-29 23:40:11,811 | INFO     | cat /etc/os-release:
[2025-11-30 00:41:02] NAME="CentOS Linux"
[2025-11-30 00:41:02] VERSION="7 (Core)"
[2025-11-30 00:41:02] ID="centos"
[2025-11-30 00:41:02] ID_LIKE="rhel fedora"
[2025-11-30 00:41:02] VERSION_ID="7"
[2025-11-30 00:41:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 00:41:02] ANSI_COLOR="0;31"
[2025-11-30 00:41:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 00:41:02] HOME_URL="https://www.centos.org/"
[2025-11-30 00:41:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 00:41:02] 
[2025-11-30 00:41:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 00:41:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 00:41:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 00:41:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 00:41:02] 
[2025-11-30 00:41:02] 2025-11-29 23:40:11,811 | INFO     | ***************************************
[2025-11-30 00:41:02] 2025-11-29 23:40:12,315 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-30 00:41:02] 2025-11-29 23:40:12,464 | INFO     | sufficient remaining disk space (488112128000 B)
[2025-11-30 00:41:02] 2025-11-29 23:40:12,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 00:41:02] 2025-11-29 23:40:12,464 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 00:41:02] 2025-11-29 23:40:12,464 | INFO     | update_server=False
[2025-11-30 00:41:02] 2025-11-29 23:40:12,464 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 00:41:02] 2025-11-29 23:40:12,465 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 00:41:02] 2025-11-29 23:40:12,601 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-30 00:41:02] 2025-11-29 23:40:12,601 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-30 00:41:02] 2025-11-29 23:40:12,601 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 00:41:02] 2025-11-29 23:40:12,601 | INFO     | will abort loop
[2025-11-30 00:41:02] 2025-11-29 23:40:13,312 | INFO     | all job control threads have been joined
[2025-11-30 00:41:02] 2025-11-29 23:40:13,367 | INFO     | all data control threads have been joined
[2025-11-30 00:41:02] 2025-11-29 23:40:13,471 | INFO     | [job] retrieve thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:13,476 | INFO     | [data] copytool_in thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:13,480 | INFO     | all payload control threads have been joined
[2025-11-30 00:41:02] 2025-11-29 23:40:13,522 | INFO     | [payload] validate_post thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:13,607 | INFO     | [job] job monitor thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:13,664 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:13,701 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:13,810 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 00:41:02] 2025-11-29 23:40:13,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 00:41:02] 2025-11-29 23:40:14,095 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:14,319 | INFO     | [job] control thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:14,373 | INFO     | [data] control thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:14,461 | INFO     | [job] validate thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:14,472 | INFO     | [data] copytool_out thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:14,486 | INFO     | [payload] control thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:14,535 | INFO     | [payload] failed_post thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:14,633 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:14,816 | INFO     | [job] queue monitor thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:18,006 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 00:41:02] 2025-11-29 23:40:41,344 | INFO     | PID=14103 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 00:41:02] 2025-11-29 23:40:41,344 | INFO     | .. there are 9 such processes running
[2025-11-30 00:41:02] 2025-11-29 23:40:41,345 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 00:41:02] 2025-11-29 23:40:41,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 00:41:02] 2025-11-29 23:40:41,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 00:41:02] 2025-11-29 23:40:51,230 | INFO     | [monitor] cgroup control has ended
[2025-11-30 00:41:02] 2025-11-29 23:40:52,851 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140351861634880)>', '<ExcThread(monitor, started 140351343949568)>']
[2025-11-30 00:41:02] 2025-11-29 23:40:53,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 00:41:02] 2025-11-29 23:40:53,416 | INFO     | [monitor] control thread has ended
[2025-11-30 00:41:02] 2025-11-29 23:40:57,877 | INFO     | all workflow threads have been joined
[2025-11-30 00:41:02] 2025-11-29 23:40:57,877 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 00:41:02] 2025-11-29 23:40:57,877 | INFO     | traces error code: 0
[2025-11-30 00:41:02] 2025-11-29 23:40:57,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 00:41:02] 2025-11-29 23:40:58,304 [wrapper] ==== pilot stdout END ====
[2025-11-30 00:41:02] 2025-11-29 23:40:58,416 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 00:41:02] 2025-11-29 23:40:58,483 [wrapper] pilotpid: 14103
[2025-11-30 00:41:02] 2025-11-29 23:40:58,606 [wrapper] Pilot exit status: 0
[2025-11-30 00:41:02] 2025-11-29 23:40:58,979 [wrapper] pandaids: 6897881088
[2025-11-30 00:41:02] 2025-11-29 23:40:59,869 [wrapper] cleanup supervisor_pilot 17968 14104
[2025-11-30 00:41:02] 2025-11-29 23:40:59,941 [wrapper] Test setup, not cleaning
[2025-11-30 00:41:02] 2025-11-29 23:41:00,039 [wrapper] apfmon messages muted
[2025-11-30 00:41:02] 2025-11-29 23:41:00,087 [wrapper] ==== wrapper stdout END ====
[2025-11-30 00:41:02] 2025-11-29 23:41:00,166 [wrapper] ==== wrapper stderr END ====
[2025-11-30 00:41:02]  *** Error codes and diagnostics ***
[2025-11-30 00:41:02]     "exeErrorCode": 0,
[2025-11-30 00:41:02]     "exeErrorDiag": "",
[2025-11-30 00:41:02]     "pilotErrorCode": 0,
[2025-11-30 00:41:02]     "pilotErrorDiag": "",
[2025-11-30 00:41:02]  *** Listing of results directory ***
[2025-11-30 00:41:02] total 1330472
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc    576529 Nov 26 02:44 pilot3.tar.gz
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc      5112 Nov 26 02:56 queuedata.json
[2025-11-30 00:41:02] -rwx------. 1 boinc boinc     36292 Nov 26 02:58 runpilot2-wrapper.sh
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc       100 Nov 29 02:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 00:41:02] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 02:35 run_atlas
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc       105 Nov 29 02:35 job.xml
[2025-11-30 00:41:02] drwxrwx--x. 2 boinc boinc        68 Nov 29 02:35 shared
[2025-11-30 00:41:02] -rw-r--r--. 2 boinc boinc    590107 Nov 29 02:35 input.tar.gz
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc      6392 Nov 29 02:35 init_data.xml
[2025-11-30 00:41:02] -rw-r--r--. 2 boinc boinc 409256056 Nov 29 02:35 EVNT.47483658._003141.pool.root.1
[2025-11-30 00:41:02] -rw-r--r--. 2 boinc boinc     15847 Nov 29 02:35 start_atlas.sh
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc         0 Nov 29 02:35 boinc_lockfile
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc      2784 Nov 29 02:35 pandaJob.out
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc    991834 Nov 29 02:39 agis_schedconf.cvmfs.json
[2025-11-30 00:41:02] drwx------. 5 boinc boinc      4096 Nov 29 02:39 pilot3
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc       533 Nov 30 00:18 boinc_task_state.xml
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc 923333182 Nov 30 00:37 HITS.47556173._000994.pool.root.1
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc      1029 Nov 30 00:38 memory_monitor_summary.json
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc   1516240 Nov 30 00:38 agis_ddmendpoints.agis.ALL.json
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc   2382891 Nov 30 00:38 log.47556173._000994.job.log.tgz.1
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc      8629 Nov 30 00:40 heartbeat.json
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc      8192 Nov 30 00:40 boinc_mmap_file
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc        29 Nov 30 00:40 wrapper_checkpoint.txt
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc        95 Nov 30 00:40 pilot_heartbeat.json
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc      5070 Nov 30 00:40 pilotlog.txt
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc  10568892 Nov 30 00:41 log.47556173._000994.job.log.1
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc       353 Nov 30 00:41 output.list
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc       620 Nov 30 00:41 runtime_log
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc  12974080 Nov 30 00:41 result.tar.gz
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc      8817 Nov 30 00:41 runtime_log.err
[2025-11-30 00:41:02] -rw-------. 1 boinc boinc       662 Nov 30 00:41 A0EMDmAzJi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2gMKDmYXkn0n.diag
[2025-11-30 00:41:02] -rw-r--r--. 1 boinc boinc     21394 Nov 30 00:41 stderr.txt
[2025-11-30 00:41:03] HITS file was successfully produced:
[2025-11-30 00:41:03] -rw-------. 1 boinc boinc 923333182 Nov 30 00:37 shared/HITS.pool.root.1
[2025-11-30 00:41:03]  *** Contents of shared directory: ***
[2025-11-30 00:41:03] total 1314632
[2025-11-30 00:41:03] -rw-r--r--. 2 boinc boinc    590107 Nov 29 02:35 input.tar.gz
[2025-11-30 00:41:03] -rw-r--r--. 2 boinc boinc 409256056 Nov 29 02:35 ATLAS.root_0
[2025-11-30 00:41:03] -rw-r--r--. 2 boinc boinc     15847 Nov 29 02:35 start_atlas.sh
[2025-11-30 00:41:03] -rw-------. 1 boinc boinc 923333182 Nov 30 00:37 HITS.pool.root.1
[2025-11-30 00:41:03] -rw-------. 1 boinc boinc  12974080 Nov 30 00:41 result.tar.gz
00:41:04 (10281): run_atlas exited; CPU time 295779.998678
00:41:04 (10281): called boinc_finish(0)

</stderr_txt>
]]>

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