Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:48:04 (476459): wrapper (7.7.26015): starting
22:48:04 (476459): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 22:48:04] Arguments: --nthreads 11
[2025-11-26 22:48:04] Threads: 11
[2025-11-26 22:48:04] Checking for CVMFS
[2025-11-26 22:48:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:48:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:48:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:48:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:48:05] 2.13.3.0 11048 30970 399656 153345 3 477 30814064 32935937 31317 16776704 0 90333260 99.427 132056267 37214 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 22:48:05] CVMFS is ok
[2025-11-26 22:48:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 22:48:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 22:48:05] Further information can be found at the LHC@home message board.
[2025-11-26 22:48:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:48:05] Checking for apptainer binary...
[2025-11-26 22:48:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:48:05] Running /usr/bin/apptainer --version
[2025-11-26 22:48:05] apptainer version 1.4.4-1.el9
[2025-11-26 22:48:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:48:05] c6-1-24-2.aglt2.org
[2025-11-26 22:48:05] apptainer works
[2025-11-26 22:48:05] Set ATHENA_PROC_NUMBER=11
[2025-11-26 22:48:05] Set ATHENA_CORE_NUMBER=11
[2025-11-26 22:48:05] Starting ATLAS job with PandaID=6897998634
[2025-11-26 22:48:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:35:37]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:35:37] 2025-11-28 04:34:18,490 | INFO     | time since job start (89160s) is within the limit (172800.0s)
[2025-11-27 23:35:37] 2025-11-28 04:34:19,363 | INFO     | monitor loop #4809: job 0:6897998634 is in state 'finished'
[2025-11-27 23:35:37] 2025-11-28 04:34:19,364 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:35:37] 2025-11-28 04:34:20,497 | INFO     | time since job start (89162s) is within the limit (172800.0s)
[2025-11-27 23:35:37] 2025-11-28 04:34:21,901 | INFO     | monitor loop #4810: job 0:6897998634 is in state 'finished'
[2025-11-27 23:35:37] 2025-11-28 04:34:21,928 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:35:37] 2025-11-28 04:34:22,504 | INFO     | time since job start (89164s) is within the limit (172800.0s)
[2025-11-27 23:35:37] 2025-11-28 04:34:24,511 | INFO     | time since job start (89166s) is within the limit (172800.0s)
[2025-11-27 23:35:37] 2025-11-28 04:34:24,513 | INFO     | monitor loop #4811: job 0:6897998634 is in state 'finished'
[2025-11-27 23:35:37] 2025-11-28 04:34:24,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:35:37] 2025-11-28 04:34:26,518 | INFO     | time since job start (89168s) is within the limit (172800.0s)
[2025-11-27 23:35:37] 2025-11-28 04:34:27,065 | INFO     | monitor loop #4812: job 0:6897998634 is in state 'finished'
[2025-11-27 23:35:37] 2025-11-28 04:34:27,068 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:35:37] 2025-11-28 04:34:28,525 | INFO     | time since job start (89170s) is within the limit (172800.0s)
[2025-11-27 23:35:37] 2025-11-28 04:34:29,573 | INFO     | monitor loop #4813: job 0:6897998634 is in state 'finished'
[2025-11-27 23:35:37] 2025-11-28 04:34:29,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:35:37] 2025-11-28 04:34:30,308 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 23:35:37] 2025-11-28 04:34:30,333 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3081.4941249999997
[2025-11-27 23:35:37] 2025-11-28 04:34:30,469 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897998634/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:35:37] 2025-11-28 04:34:30,470 | INFO     | extracted standard info from prmon json
[2025-11-27 23:35:37] 2025-11-28 04:34:30,470 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:35:37] 2025-11-28 04:34:30,470 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:35:37] 2025-11-28 04:34:30,557 | INFO     | time since job start (89172s) is within the limit (172800.0s)
[2025-11-27 23:35:37] 2025-11-28 04:34:30,609 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:35:37] 2025-11-28 04:34:30,611 | INFO     | sum of square deviations: 966969583383.1188
[2025-11-27 23:35:37] 2025-11-28 04:34:30,664 | INFO     | sum of deviations: 2021211920081.1917
[2025-11-27 23:35:37] 2025-11-28 04:34:30,664 | INFO     | mean x: 1764259862.3826146
[2025-11-27 23:35:37] 2025-11-28 04:34:30,664 | INFO     | mean y: 3442043.8583162217
[2025-11-27 23:35:37] 2025-11-28 04:34:30,664 | INFO     | intersect: -3684308972.5619144
[2025-11-27 23:35:37] 2025-11-28 04:34:30,666 | INFO     | chi2: 25.05662047653774
[2025-11-27 23:35:37] 2025-11-28 04:34:30,704 | INFO     | sum of square deviations: 957076305434.4185
[2025-11-27 23:35:37] 2025-11-28 04:34:30,798 | INFO     | sum of deviations: 2682585418362.879
[2025-11-27 23:35:37] 2025-11-28 04:34:30,798 | INFO     | mean x: 1764259709.8901098
[2025-11-27 23:35:37] 2025-11-28 04:34:30,798 | INFO     | mean y: 3452236.3179945056
[2025-11-27 23:35:37] 2025-11-28 04:34:30,798 | INFO     | intersect: -4941584376.837021
[2025-11-27 23:35:37] 2025-11-28 04:34:30,804 | INFO     | chi2: 20.80801422192824
[2025-11-27 23:35:37] 2025-11-28 04:34:30,804 | INFO     | current chi2=20.80801422192824 (change=16.95602269503091 %)
[2025-11-27 23:35:37] 2025-11-28 04:34:30,804 | INFO     | right removable region: 1455
[2025-11-27 23:35:37] 2025-11-28 04:34:30,806 | INFO     | sum of square deviations: 957074359900.4183
[2025-11-27 23:35:37] 2025-11-28 04:34:30,879 | INFO     | sum of deviations: 1581555871083.7512
[2025-11-27 23:35:37] 2025-11-28 04:34:30,879 | INFO     | mean x: 1764260014.8901098
[2025-11-27 23:35:37] 2025-11-28 04:34:30,879 | INFO     | mean y: 3448812.9546703296
[2025-11-27 23:35:37] 2025-11-28 04:34:30,880 | INFO     | intersect: -2911973333.5106077
[2025-11-27 23:35:37] 2025-11-28 04:34:30,885 | INFO     | chi2: 23.099892079503338
[2025-11-27 23:35:37] 2025-11-28 04:34:30,886 | INFO     | current chi2=23.099892079503338 (change=7.809227101741932 %)
[2025-11-27 23:35:37] 2025-11-28 04:34:30,886 | INFO     | left removable region: 10
[2025-11-27 23:35:37] 2025-11-28 04:34:30,887 | INFO     | sum of square deviations: 935545806153.5908
[2025-11-27 23:35:37] 2025-11-28 04:34:30,963 | INFO     | sum of deviations: 2232712183318.8438
[2025-11-27 23:35:37] 2025-11-28 04:34:30,964 | INFO     | mean x: 1764259984.4027681
[2025-11-27 23:35:37] 2025-11-28 04:34:30,964 | INFO     | mean y: 3462801.53633218
[2025-11-27 23:35:37] 2025-11-28 04:34:30,964 | INFO     | intersect: -4207004217.618137
[2025-11-27 23:35:37] 2025-11-28 04:34:30,965 | INFO     | chi2: 18.121387238225132
[2025-11-27 23:35:37] 2025-11-28 04:34:30,966 | INFO     | current memory leak: 2.39 B/s (using 1445 data points, chi2=18.12)
[2025-11-27 23:35:37] 2025-11-28 04:34:30,967 | INFO     | could have reported an average CPU frequency of 3035 MHz (52 samples)
[2025-11-27 23:35:37] 2025-11-28 04:34:30,969 | INFO     | ..............................
[2025-11-27 23:35:37] 2025-11-28 04:34:30,969 | INFO     | . Timing measurements:
[2025-11-27 23:35:37] 2025-11-28 04:34:30,969 | INFO     | . get job = 0 s
[2025-11-27 23:35:37] 2025-11-28 04:34:30,969 | INFO     | . initial setup = 2 s
[2025-11-27 23:35:37] 2025-11-28 04:34:30,969 | INFO     | . payload setup = 7 s
[2025-11-27 23:35:37] 2025-11-28 04:34:30,970 | INFO     | . stage-in = 0 s
[2025-11-27 23:35:37] 2025-11-28 04:34:30,970 | INFO     | . payload execution = 89086 s
[2025-11-27 23:35:37] 2025-11-28 04:34:30,970 | INFO     | . stage-out = 8 s
[2025-11-27 23:35:37] 2025-11-28 04:34:30,970 | INFO     | . log creation = 3 s
[2025-11-27 23:35:37] 2025-11-28 04:34:30,970 | INFO     | ..............................
[2025-11-27 23:35:37] 2025-11-28 04:34:31,145 | INFO     | 
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | job summary report
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | --------------------------------------------------
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | PanDA job id: 6897998634
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | task id: 47556173
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | errors: (none)
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | pilot state: finished 
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | transexitcode: 0
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | exeerrorcode: 0
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | exeerrordiag: 
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | exitcode: 0
[2025-11-27 23:35:37] 2025-11-28 04:34:31,146 | INFO     | exitmsg: OK
[2025-11-27 23:35:37] 2025-11-28 04:34:31,147 | INFO     | cpuconsumptiontime: 246385 s
[2025-11-27 23:35:37] 2025-11-28 04:34:31,147 | INFO     | nevents: 1000
[2025-11-27 23:35:37] 2025-11-28 04:34:31,147 | INFO     | neventsw: 0
[2025-11-27 23:35:37] 2025-11-28 04:34:31,147 | INFO     | pid: 487436
[2025-11-27 23:35:37] 2025-11-28 04:34:31,147 | INFO     | pgrp: 487436
[2025-11-27 23:35:37] 2025-11-28 04:34:31,147 | INFO     | corecount: 11
[2025-11-27 23:35:37] 2025-11-28 04:34:31,147 | INFO     | event service: False
[2025-11-27 23:35:37] 2025-11-28 04:34:31,147 | INFO     | sizes: {0: 2284258, 6: 2284520, 11: 2284548, 89098: 2349321, 89099: 2349320, 89109: 2358370, 89112: 2358554, 89155: 2358800}
[2025-11-27 23:35:37] 2025-11-28 04:34:31,147 | INFO     | --------------------------------------------------
[2025-11-27 23:35:37] 2025-11-28 04:34:31,147 | INFO     | 
[2025-11-27 23:35:37] 2025-11-28 04:34:31,147 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 23:35:37] 2025-11-28 04:34:31,240 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,240 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,240 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,240 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,240 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,240 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,240 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,240 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,240 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,240 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,241 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,241 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,241 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,241 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,241 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,241 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,241 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,241 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:35:37] 2025-11-28 04:34:31,241 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,241 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:35:37] 2025-11-28 04:34:31,241 | INFO     | job 6897998634 has completed (purged errors)
[2025-11-27 23:35:37] 2025-11-28 04:34:31,242 | INFO     | overall cleanup function is called
[2025-11-27 23:35:37] 2025-11-28 04:34:32,284 | INFO     | --- collectZombieJob: --- 10, [487436]
[2025-11-27 23:35:37] 2025-11-28 04:34:32,284 | INFO     | zombie collector waiting for pid 487436
[2025-11-27 23:35:37] 2025-11-28 04:34:32,284 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:35:37] 2025-11-28 04:34:32,285 | INFO     | collected zombie processes
[2025-11-27 23:35:37] 2025-11-28 04:34:32,285 | INFO     | will attempt to kill all subprocesses of pid=487436
[2025-11-27 23:35:37] 2025-11-28 04:34:34,424 | INFO     | process IDs to be killed: [487436] (in reverse order)
[2025-11-27 23:35:37] 2025-11-28 04:34:36,025 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:35:37] 2025-11-28 04:34:36,025 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:35:37] 2025-11-28 04:34:36,102 | INFO     | did not find any defunct processes belonging to 487436
[2025-11-27 23:35:37] 2025-11-28 04:34:36,347 | INFO     | did not find any defunct processes belonging to 487436
[2025-11-27 23:35:37] 2025-11-28 04:34:36,472 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:35:37] 2025-11-28 04:34:36,474 | INFO     | ready for new job
[2025-11-27 23:35:37] 2025-11-28 04:34:36,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:35:37] 2025-11-28 04:34:36,671 | INFO     | ***************************************
[2025-11-27 23:35:37] 2025-11-28 04:34:36,679 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:35:37] 2025-11-28 04:34:36,679 | INFO     | ***************************************
[2025-11-27 23:35:37] 2025-11-28 04:34:36,680 | INFO     | 
[2025-11-27 23:35:37] 2025-11-28 04:34:36,683 | INFO     | architecture information:
[2025-11-27 23:35:37] 2025-11-28 04:34:36,931 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:35:37] 2025-11-28 04:34:37,131 | INFO     | cat /etc/os-release:
[2025-11-27 23:35:37] NAME="CentOS Linux"
[2025-11-27 23:35:37] VERSION="7 (Core)"
[2025-11-27 23:35:37] ID="centos"
[2025-11-27 23:35:37] ID_LIKE="rhel fedora"
[2025-11-27 23:35:37] VERSION_ID="7"
[2025-11-27 23:35:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:35:37] ANSI_COLOR="0;31"
[2025-11-27 23:35:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:35:37] HOME_URL="https://www.centos.org/"
[2025-11-27 23:35:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:35:37] 
[2025-11-27 23:35:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:35:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:35:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:35:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:35:37] 
[2025-11-27 23:35:37] 2025-11-28 04:34:37,131 | INFO     | ***************************************
[2025-11-27 23:35:37] 2025-11-28 04:34:37,639 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 23:35:37] 2025-11-28 04:34:38,428 | INFO     | sufficient remaining disk space (71173144576 B)
[2025-11-27 23:35:37] 2025-11-28 04:34:38,428 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:35:37] 2025-11-28 04:34:38,428 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:35:37] 2025-11-28 04:34:38,428 | INFO     | update_server=False
[2025-11-27 23:35:37] 2025-11-28 04:34:38,428 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:35:37] 2025-11-28 04:34:38,431 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:35:37] 2025-11-28 04:34:38,431 | INFO     | aborting loop
[2025-11-27 23:35:37] 2025-11-28 04:34:38,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:35:37] 2025-11-28 04:34:38,910 | INFO     | all job control threads have been joined
[2025-11-27 23:35:37] 2025-11-28 04:34:39,042 | INFO     | all data control threads have been joined
[2025-11-27 23:35:37] 2025-11-28 04:34:39,246 | INFO     | all payload control threads have been joined
[2025-11-27 23:35:37] 2025-11-28 04:34:39,400 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:35:37] 2025-11-28 04:34:39,434 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:39,441 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:39,942 | INFO     | [job] control thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:40,052 | INFO     | [data] control thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:40,190 | INFO     | [job] validate thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:40,191 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:40,191 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:40,191 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:40,198 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:40,210 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:35:37] 2025-11-28 04:34:40,252 | INFO     | [payload] control thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:40,281 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:40,636 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:40,859 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:40,955 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:41,219 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:34:43,434 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:35:37] 2025-11-28 04:35:08,149 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:35:37] 2025-11-28 04:35:08,221 | INFO     | PID=480263 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 23:35:37] 2025-11-28 04:35:08,221 | INFO     | .. there are 46 such processes running
[2025-11-27 23:35:37] 2025-11-28 04:35:08,341 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:35:37] 2025-11-28 04:35:08,341 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:35:37] 2025-11-28 04:35:08,342 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:35:37] 2025-11-28 04:35:08,918 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140333879981888)>', '<ExcThread(monitor, started 140332998051584)>']
[2025-11-27 23:35:37] 2025-11-28 04:35:09,347 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:35:37] 2025-11-28 04:35:09,347 | INFO     | [monitor] control thread has ended
[2025-11-27 23:35:37] 2025-11-28 04:35:13,978 | INFO     | all workflow threads have been joined
[2025-11-27 23:35:37] 2025-11-28 04:35:13,978 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:35:37] 2025-11-28 04:35:13,979 | INFO     | traces error code: 0
[2025-11-27 23:35:37] 2025-11-28 04:35:13,979 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:35:37] 2025-11-28 04:35:16,400 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:35:37] 2025-11-28 04:35:16,470 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:35:37] 2025-11-28 04:35:16,547 [wrapper] pilotpid: 480263
[2025-11-27 23:35:37] 2025-11-28 04:35:16,567 [wrapper] Pilot exit status: 0
[2025-11-27 23:35:37] 2025-11-28 04:35:16,629 [wrapper] pandaids: 6897998634
[2025-11-27 23:35:37] 2025-11-28 04:35:18,411 [wrapper] cleanup supervisor_pilot 2899940 480264
[2025-11-27 23:35:37] 2025-11-28 04:35:18,438 [wrapper] Test setup, not cleaning
[2025-11-27 23:35:37] 2025-11-28 04:35:18,492 [wrapper] apfmon messages muted
[2025-11-27 23:35:37] 2025-11-28 04:35:18,502 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:35:37] 2025-11-28 04:35:18,504 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:35:37]  *** Error codes and diagnostics ***
[2025-11-27 23:35:37]     "exeErrorCode": 0,
[2025-11-27 23:35:37]     "exeErrorDiag": "",
[2025-11-27 23:35:37]     "pilotErrorCode": 0,
[2025-11-27 23:35:37]     "pilotErrorDiag": "",
[2025-11-27 23:35:37]  *** Listing of results directory ***
[2025-11-27 23:35:38] total 1342612
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:21 queuedata.json
[2025-11-27 23:35:38] -rwx------. 1 boincer umatlas     36292 Nov 25 21:23 runpilot2-wrapper.sh
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas       100 Nov 26 22:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:35:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 22:48 run_atlas
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas       105 Nov 26 22:48 job.xml
[2025-11-27 23:35:38] -rw-r--r--. 2 boincer umatlas 411145366 Nov 26 22:48 EVNT.47483658._003150.pool.root.1
[2025-11-27 23:35:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 22:48 start_atlas.sh
[2025-11-27 23:35:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 22:48 shared
[2025-11-27 23:35:38] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 22:48 input.tar.gz
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas         0 Nov 26 22:48 boinc_lockfile
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 22:48 pandaJob.out
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas        57 Nov 26 22:48 setup.sh.local
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas    991546 Nov 26 22:48 agis_schedconf.cvmfs.json
[2025-11-27 23:35:38] drwx------. 5 boincer umatlas      4096 Nov 26 22:48 pilot3
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:45 boinc_task_state.xml
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas 933281429 Nov 27 23:30 HITS.47556173._001061.pool.root.1
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 23:31 init_data.xml
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas      1058 Nov 27 23:33 memory_monitor_summary.json
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:33 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas   2737534 Nov 27 23:33 log.47556173._001061.job.log.tgz.1
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas      8631 Nov 27 23:34 heartbeat.json
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas        95 Nov 27 23:35 pilot_heartbeat.json
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas      4823 Nov 27 23:35 pilotlog.txt
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas  10504204 Nov 27 23:35 log.47556173._001061.job.log.1
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas       353 Nov 27 23:35 output.list
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas       620 Nov 27 23:35 runtime_log
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas  13260800 Nov 27 23:35 result.tar.gz
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas      9350 Nov 27 23:35 runtime_log.err
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas       661 Nov 27 23:35 gPMNDm6MKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmemJKDm8i7Ffn.diag
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas        29 Nov 27 23:35 wrapper_checkpoint.txt
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 23:35 boinc_mmap_file
[2025-11-27 23:35:38] -rw-r--r--. 1 boincer umatlas     21774 Nov 27 23:35 stderr.txt
[2025-11-27 23:35:38] HITS file was successfully produced:
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas 933281429 Nov 27 23:30 shared/HITS.pool.root.1
[2025-11-27 23:35:38]  *** Contents of shared directory: ***
[2025-11-27 23:35:38] total 1326476
[2025-11-27 23:35:38] -rw-r--r--. 2 boincer umatlas 411145366 Nov 26 22:48 ATLAS.root_0
[2025-11-27 23:35:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 22:48 start_atlas.sh
[2025-11-27 23:35:38] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 22:48 input.tar.gz
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas 933281429 Nov 27 23:30 HITS.pool.root.1
[2025-11-27 23:35:38] -rw-------. 1 boincer umatlas  13260800 Nov 27 23:35 result.tar.gz
23:35:39 (476459): run_atlas exited; CPU time 248283.602612
23:35:39 (476459): called boinc_finish(0)

</stderr_txt>
]]>

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