Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:16:11 (1770257): wrapper (7.7.26015): starting
18:16:11 (1770257): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 18:16:11] Arguments: --nthreads 9
[2025-11-26 18:16:11] Threads: 9
[2025-11-26 18:16:11] Checking for CVMFS
[2025-11-26 18:16:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:16:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:16:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:16:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:16:33] 2.13.3.0 11334 30698 328624 153340 2 111 23909903 32935937 31439 16776704 0 139333201 99.517 181644468 40701 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 18:16:33] CVMFS is ok
[2025-11-26 18:16:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:16:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:16:33] Further information can be found at the LHC@home message board.
[2025-11-26 18:16:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:16:33] Checking for apptainer binary...
[2025-11-26 18:16:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:16:33] Running /usr/bin/apptainer --version
[2025-11-26 18:16:33] apptainer version 1.4.4-1.el9
[2025-11-26 18:16:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:16:34] c6-4-5-2.aglt2.org
[2025-11-26 18:16:34] apptainer works
[2025-11-26 18:16:34] Set ATHENA_PROC_NUMBER=9
[2025-11-26 18:16:34] Set ATHENA_CORE_NUMBER=9
[2025-11-26 18:16:34] Starting ATLAS job with PandaID=6898271540
[2025-11-26 18:16:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:46:08]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:46:08] 2025-11-27 23:45:12,978 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:46:08] 2025-11-27 23:45:12,995 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:46:08] 2025-11-27 23:45:12,997 | INFO     | sum of square deviations: 929750991934.5208
[2025-11-27 18:46:08] 2025-11-27 23:45:13,031 | INFO     | sum of deviations: 5045790516549.68
[2025-11-27 18:46:08] 2025-11-27 23:45:13,031 | INFO     | mean x: 1764243091.2704577
[2025-11-27 18:46:08] 2025-11-27 23:45:13,031 | INFO     | mean y: 3110812.8162274617
[2025-11-27 18:46:08] 2025-11-27 23:45:13,031 | INFO     | intersect: -9571496943.501934
[2025-11-27 18:46:08] 2025-11-27 23:45:13,032 | INFO     | chi2: 10.123379012054532
[2025-11-27 18:46:08] 2025-11-27 23:45:13,034 | INFO     | sum of square deviations: 920113187284.0428
[2025-11-27 18:46:08] 2025-11-27 23:45:13,164 | INFO     | sum of deviations: 5586061790475.919
[2025-11-27 18:46:08] 2025-11-27 23:45:13,164 | INFO     | mean x: 1764242938.7731385
[2025-11-27 18:46:08] 2025-11-27 23:45:13,164 | INFO     | mean y: 3119361.137787056
[2025-11-27 18:46:08] 2025-11-27 23:45:13,164 | INFO     | intersect: -10707704269.689322
[2025-11-27 18:46:08] 2025-11-27 23:45:13,175 | INFO     | chi2: 6.786306901855679
[2025-11-27 18:46:08] 2025-11-27 23:45:13,176 | INFO     | current chi2=6.786306901855679 (change=32.96401434960792 %)
[2025-11-27 18:46:08] 2025-11-27 23:45:13,177 | INFO     | sum of square deviations: 910542221096.0432
[2025-11-27 18:46:08] 2025-11-27 23:45:13,304 | INFO     | sum of deviations: 5988601466661.619
[2025-11-27 18:46:08] 2025-11-27 23:45:13,304 | INFO     | mean x: 1764242786.275838
[2025-11-27 18:46:08] 2025-11-27 23:45:13,304 | INFO     | mean y: 3125771.0237430166
[2025-11-27 18:46:08] 2025-11-27 23:45:13,305 | INFO     | intersect: -11600231758.867495
[2025-11-27 18:46:08] 2025-11-27 23:45:13,313 | INFO     | chi2: 4.64113838508103
[2025-11-27 18:46:08] 2025-11-27 23:45:13,314 | INFO     | current chi2=4.64113838508103 (change=31.61024910600586 %)
[2025-11-27 18:46:08] 2025-11-27 23:45:13,315 | INFO     | sum of square deviations: 901037424050.7914
[2025-11-27 18:46:08] 2025-11-27 23:45:13,389 | INFO     | sum of deviations: 5972491771743.002
[2025-11-27 18:46:08] 2025-11-27 23:45:13,389 | INFO     | mean x: 1764242633.7750525
[2025-11-27 18:46:08] 2025-11-27 23:45:13,390 | INFO     | mean y: 3125511.0
[2025-11-27 18:46:08] 2025-11-27 23:45:13,390 | INFO     | intersect: -11691088660.71429
[2025-11-27 18:46:08] 2025-11-27 23:45:13,391 | INFO     | chi2: 4.581602662218595
[2025-11-27 18:46:08] 2025-11-27 23:45:13,391 | INFO     | current chi2=4.581602662218595 (change=1.282782755494064 %)
[2025-11-27 18:46:08] 2025-11-27 23:45:13,392 | INFO     | right removable region: 1426
[2025-11-27 18:46:08] 2025-11-27 23:45:13,393 | INFO     | sum of square deviations: 920112509574.0431
[2025-11-27 18:46:08] 2025-11-27 23:45:13,471 | INFO     | sum of deviations: 4442251524906.606
[2025-11-27 18:46:08] 2025-11-27 23:45:13,471 | INFO     | mean x: 1764243243.7731385
[2025-11-27 18:46:08] 2025-11-27 23:45:13,471 | INFO     | mean y: 3120360.590814196
[2025-11-27 18:46:08] 2025-11-27 23:45:13,471 | INFO     | intersect: -8514546944.666845
[2025-11-27 18:46:08] 2025-11-27 23:45:13,473 | INFO     | chi2: 6.286925093427057
[2025-11-27 18:46:08] 2025-11-27 23:45:13,473 | INFO     | current chi2=6.286925093427057 (change=37.896970113034115 %)
[2025-11-27 18:46:08] 2025-11-27 23:45:13,475 | INFO     | sum of square deviations: 910541040747.1445
[2025-11-27 18:46:08] 2025-11-27 23:45:13,698 | INFO     | sum of deviations: 4226268503264.26
[2025-11-27 18:46:08] 2025-11-27 23:45:13,698 | INFO     | mean x: 1764243396.2744412
[2025-11-27 18:46:08] 2025-11-27 23:45:13,698 | INFO     | mean y: 3123798.2639664803
[2025-11-27 18:46:08] 2025-11-27 23:45:13,698 | INFO     | intersect: -8185596933.805923
[2025-11-27 18:46:08] 2025-11-27 23:45:13,699 | INFO     | chi2: 5.761492718271584
[2025-11-27 18:46:08] 2025-11-27 23:45:13,701 | INFO     | current chi2=5.761492718271584 (change=8.35754152224288 %)
[2025-11-27 18:46:08] 2025-11-27 23:45:13,701 | INFO     | left removable region: 20
[2025-11-27 18:46:08] 2025-11-27 23:45:13,702 | INFO     | sum of square deviations: 861839358860.2653
[2025-11-27 18:46:08] 2025-11-27 23:45:13,776 | INFO     | time since job start (88074s) is within the limit (172800.0s)
[2025-11-27 18:46:08] 2025-11-27 23:45:13,823 | INFO     | sum of deviations: 5020085023413.556
[2025-11-27 18:46:08] 2025-11-27 23:45:13,823 | INFO     | mean x: 1764243213.2780938
[2025-11-27 18:46:08] 2025-11-27 23:45:13,823 | INFO     | mean y: 3140644.6379800853
[2025-11-27 18:46:08] 2025-11-27 23:45:13,824 | INFO     | intersect: -10273311505.735838
[2025-11-27 18:46:08] 2025-11-27 23:45:13,825 | INFO     | chi2: 0.15388114037930828
[2025-11-27 18:46:08] 2025-11-27 23:45:13,825 | INFO     | current memory leak: 5.82 B/s (using 1406 data points, chi2=0.15)
[2025-11-27 18:46:08] 2025-11-27 23:45:13,827 | INFO     | could have reported an average CPU frequency of 3168 MHz (52 samples)
[2025-11-27 18:46:08] 2025-11-27 23:45:13,827 | INFO     | ..............................
[2025-11-27 18:46:08] 2025-11-27 23:45:13,827 | INFO     | . Timing measurements:
[2025-11-27 18:46:08] 2025-11-27 23:45:13,827 | INFO     | . get job = 0 s
[2025-11-27 18:46:08] 2025-11-27 23:45:13,827 | INFO     | . initial setup = 3 s
[2025-11-27 18:46:08] 2025-11-27 23:45:13,827 | INFO     | . payload setup = 24 s
[2025-11-27 18:46:08] 2025-11-27 23:45:13,827 | INFO     | . stage-in = 0 s
[2025-11-27 18:46:08] 2025-11-27 23:45:13,827 | INFO     | . payload execution = 87956 s
[2025-11-27 18:46:08] 2025-11-27 23:45:13,827 | INFO     | . stage-out = 5 s
[2025-11-27 18:46:08] 2025-11-27 23:45:13,827 | INFO     | . log creation = 1 s
[2025-11-27 18:46:08] 2025-11-27 23:45:13,828 | INFO     | ..............................
[2025-11-27 18:46:08] 2025-11-27 23:45:13,924 | INFO     | 
[2025-11-27 18:46:08] 2025-11-27 23:45:13,924 | INFO     | job summary report
[2025-11-27 18:46:08] 2025-11-27 23:45:13,924 | INFO     | --------------------------------------------------
[2025-11-27 18:46:08] 2025-11-27 23:45:13,924 | INFO     | PanDA job id: 6898271540
[2025-11-27 18:46:08] 2025-11-27 23:45:13,924 | INFO     | task id: 47556161
[2025-11-27 18:46:08] 2025-11-27 23:45:13,924 | INFO     | errors: (none)
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | pilot state: finished 
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | transexitcode: 0
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | exeerrorcode: 0
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | exeerrordiag: 
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | exitcode: 0
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | exitmsg: OK
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | cpuconsumptiontime: 232429 s
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | nevents: 1000
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | neventsw: 0
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | pid: 1787450
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | pgrp: 1787450
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | corecount: 9
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | event service: False
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | sizes: {0: 2284143, 1: 2284342, 12: 2284342, 23: 2284660, 34: 2284660, 87984: 2349882, 87985: 2350009, 87991: 2359059, 87995: 2359115, 88021: 2359361}
[2025-11-27 18:46:08] 2025-11-27 23:45:13,925 | INFO     | --------------------------------------------------
[2025-11-27 18:46:08] 2025-11-27 23:45:13,926 | INFO     | 
[2025-11-27 18:46:08] 2025-11-27 23:45:13,926 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 18:46:08] 2025-11-27 23:45:13,948 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,949 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,950 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,950 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,950 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:46:08] 2025-11-27 23:45:13,950 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,950 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:46:08] 2025-11-27 23:45:13,950 | INFO     | job 6898271540 has completed (purged errors)
[2025-11-27 18:46:08] 2025-11-27 23:45:13,950 | INFO     | overall cleanup function is called
[2025-11-27 18:46:08] 2025-11-27 23:45:14,984 | INFO     | --- collectZombieJob: --- 10, [1787450]
[2025-11-27 18:46:08] 2025-11-27 23:45:14,984 | INFO     | zombie collector waiting for pid 1787450
[2025-11-27 18:46:08] 2025-11-27 23:45:14,984 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:46:08] 2025-11-27 23:45:14,984 | INFO     | collected zombie processes
[2025-11-27 18:46:08] 2025-11-27 23:45:14,984 | INFO     | will attempt to kill all subprocesses of pid=1787450
[2025-11-27 18:46:08] 2025-11-27 23:45:15,624 | INFO     | process IDs to be killed: [1787450] (in reverse order)
[2025-11-27 18:46:08] 2025-11-27 23:45:15,788 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:46:08] 2025-11-27 23:45:15,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:46:08] 2025-11-27 23:45:15,804 | INFO     | did not find any defunct processes belonging to 1787450
[2025-11-27 18:46:08] 2025-11-27 23:45:15,819 | INFO     | did not find any defunct processes belonging to 1787450
[2025-11-27 18:46:08] 2025-11-27 23:45:15,820 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:46:08] 2025-11-27 23:45:15,820 | INFO     | ready for new job
[2025-11-27 18:46:08] 2025-11-27 23:45:15,820 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:46:08] 2025-11-27 23:45:15,825 | INFO     | ***************************************
[2025-11-27 18:46:08] 2025-11-27 23:45:15,826 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:46:08] 2025-11-27 23:45:15,826 | INFO     | ***************************************
[2025-11-27 18:46:08] 2025-11-27 23:45:15,826 | INFO     | 
[2025-11-27 18:46:08] 2025-11-27 23:45:15,829 | INFO     | architecture information:
[2025-11-27 18:46:08] 2025-11-27 23:45:15,829 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:46:08] 2025-11-27 23:45:15,866 | INFO     | cat /etc/os-release:
[2025-11-27 18:46:08] NAME="CentOS Linux"
[2025-11-27 18:46:08] VERSION="7 (Core)"
[2025-11-27 18:46:08] ID="centos"
[2025-11-27 18:46:08] ID_LIKE="rhel fedora"
[2025-11-27 18:46:08] VERSION_ID="7"
[2025-11-27 18:46:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:46:08] ANSI_COLOR="0;31"
[2025-11-27 18:46:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:46:08] HOME_URL="https://www.centos.org/"
[2025-11-27 18:46:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:46:08] 
[2025-11-27 18:46:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:46:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:46:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:46:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:46:08] 
[2025-11-27 18:46:08] 2025-11-27 23:45:15,866 | INFO     | ***************************************
[2025-11-27 18:46:08] 2025-11-27 23:45:16,371 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 18:46:08] 2025-11-27 23:45:16,394 | INFO     | sufficient remaining disk space (71232913408 B)
[2025-11-27 18:46:08] 2025-11-27 23:45:16,394 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:46:08] 2025-11-27 23:45:16,394 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:46:08] 2025-11-27 23:45:16,394 | INFO     | update_server=False
[2025-11-27 18:46:08] 2025-11-27 23:45:16,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:46:08] 2025-11-27 23:45:16,395 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:46:08] 2025-11-27 23:45:16,395 | INFO     | aborting loop
[2025-11-27 18:46:08] 2025-11-27 23:45:16,485 | INFO     | all data control threads have been joined
[2025-11-27 18:46:08] 2025-11-27 23:45:16,696 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:46:08] 2025-11-27 23:45:16,848 | INFO     | all job control threads have been joined
[2025-11-27 18:46:08] 2025-11-27 23:45:17,364 | INFO     | all payload control threads have been joined
[2025-11-27 18:46:08] 2025-11-27 23:45:17,401 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:17,401 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:17,441 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:17,491 | INFO     | [data] control thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:17,589 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:17,654 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:46:08] 2025-11-27 23:45:17,854 | INFO     | [job] control thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:17,900 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:17,921 | INFO     | [job] validate thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:18,370 | INFO     | [payload] control thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:18,539 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:18,545 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:18,603 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:18,672 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:18,946 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:46:08] 2025-11-27 23:45:19,661 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:19,952 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:20,707 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:46:08] 2025-11-27 23:45:47,839 | INFO     | PID=1777916 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:46:08] 2025-11-27 23:45:47,840 | INFO     | .. there are 54 such processes running
[2025-11-27 18:46:08] 2025-11-27 23:45:47,840 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:46:08] 2025-11-27 23:45:47,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:46:08] 2025-11-27 23:45:47,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:46:08] 2025-11-27 23:46:02,578 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:46:08] 2025-11-27 23:46:02,594 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140675223553856)>', '<ExcThread(monitor, started 140674565383936)>']
[2025-11-27 18:46:08] 2025-11-27 23:46:02,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:46:08] 2025-11-27 23:46:02,960 | INFO     | [monitor] control thread has ended
[2025-11-27 18:46:08] 2025-11-27 23:46:07,620 | INFO     | all workflow threads have been joined
[2025-11-27 18:46:08] 2025-11-27 23:46:07,620 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:46:08] 2025-11-27 23:46:07,620 | INFO     | traces error code: 0
[2025-11-27 18:46:08] 2025-11-27 23:46:07,620 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:46:08] 2025-11-27 23:46:08,002 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:46:08] 2025-11-27 23:46:08,004 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:46:08] 2025-11-27 23:46:08,006 [wrapper] pilotpid: 1777916
[2025-11-27 18:46:08] 2025-11-27 23:46:08,008 [wrapper] Pilot exit status: 0
[2025-11-27 18:46:08] 2025-11-27 23:46:08,042 [wrapper] pandaids: 6898271540
[2025-11-27 18:46:08] 2025-11-27 23:46:08,270 [wrapper] cleanup supervisor_pilot  522734 1777917
[2025-11-27 18:46:08] 2025-11-27 23:46:08,280 [wrapper] Test setup, not cleaning
[2025-11-27 18:46:08] 2025-11-27 23:46:08,295 [wrapper] apfmon messages muted
[2025-11-27 18:46:08] 2025-11-27 23:46:08,316 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:46:08] 2025-11-27 23:46:08,335 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:46:08]  *** Error codes and diagnostics ***
[2025-11-27 18:46:08]     "exeErrorCode": 0,
[2025-11-27 18:46:08]     "exeErrorDiag": "",
[2025-11-27 18:46:08]     "pilotErrorCode": 0,
[2025-11-27 18:46:08]     "pilotErrorDiag": "",
[2025-11-27 18:46:08]  *** Listing of results directory ***
[2025-11-27 18:46:08] total 1330320
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-11-27 18:46:08] -rwx------. 1 boincer umatlas     36292 Nov 26 10:14 runpilot2-wrapper.sh
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:14 queuedata.json
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas       100 Nov 26 18:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:46:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 18:16 run_atlas
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas       105 Nov 26 18:16 job.xml
[2025-11-27 18:46:08] -rw-r--r--. 2 boincer umatlas 409820354 Nov 26 18:16 EVNT.47483658._002538.pool.root.1
[2025-11-27 18:46:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:16 start_atlas.sh
[2025-11-27 18:46:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 18:16 shared
[2025-11-27 18:46:08] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 18:16 input.tar.gz
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas         0 Nov 26 18:16 boinc_lockfile
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 18:16 pandaJob.out
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas        57 Nov 26 18:16 setup.sh.local
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas    991538 Nov 26 18:17 agis_schedconf.cvmfs.json
[2025-11-27 18:46:08] drwx------. 5 boincer umatlas      4096 Nov 26 18:17 pilot3
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:32 boinc_task_state.xml
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas      6876 Nov 27 18:40 init_data.xml
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas 921675856 Nov 27 18:43 HITS.47556161._005205.pool.root.1
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas      1081 Nov 27 18:44 memory_monitor_summary.json
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas   2552031 Nov 27 18:44 log.47556161._005205.job.log.tgz.1
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas      8655 Nov 27 18:45 heartbeat.json
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas        95 Nov 27 18:45 pilot_heartbeat.json
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:46 boinc_mmap_file
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:46 wrapper_checkpoint.txt
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas      4824 Nov 27 18:46 pilotlog.txt
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas  10859084 Nov 27 18:46 log.47556161._005205.job.log.1
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas       353 Nov 27 18:46 output.list
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:46 runtime_log
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas  13434880 Nov 27 18:46 result.tar.gz
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 18:46 runtime_log.err
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas       664 Nov 27 18:46 lvcNDmDPWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm03MKDmgcFWwn.diag
[2025-11-27 18:46:08] -rw-r--r--. 1 boincer umatlas     21157 Nov 27 18:46 stderr.txt
[2025-11-27 18:46:08] HITS file was successfully produced:
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas 921675856 Nov 27 18:43 shared/HITS.pool.root.1
[2025-11-27 18:46:08]  *** Contents of shared directory: ***
[2025-11-27 18:46:08] total 1314016
[2025-11-27 18:46:08] -rw-r--r--. 2 boincer umatlas 409820354 Nov 26 18:16 ATLAS.root_0
[2025-11-27 18:46:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:16 start_atlas.sh
[2025-11-27 18:46:08] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 18:16 input.tar.gz
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas 921675856 Nov 27 18:43 HITS.pool.root.1
[2025-11-27 18:46:08] -rw-------. 1 boincer umatlas  13434880 Nov 27 18:46 result.tar.gz
18:46:10 (1770257): run_atlas exited; CPU time 234554.711354
18:46:10 (1770257): called boinc_finish(0)

</stderr_txt>
]]>

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