Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:31:15 (499233): wrapper (7.7.26015): starting
18:31:15 (499233): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:31:15] Arguments: --nthreads 8
[2025-11-26 18:31:15] Threads: 8
[2025-11-26 18:31:15] Checking for CVMFS
[2025-11-26 18:31:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:31:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:31:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:31:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:31:17] 2.13.3.0 12497 30578 246444 153340 2 781 27229096 32935937 43265 16776704 0 162092014 99.508 198761812 37117 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 18:31:17] CVMFS is ok
[2025-11-26 18:31:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:31:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:31:17] Further information can be found at the LHC@home message board.
[2025-11-26 18:31:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:31:17] Checking for apptainer binary...
[2025-11-26 18:31:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:31:17] Running /usr/bin/apptainer --version
[2025-11-26 18:31:17] apptainer version 1.4.4-1.el9
[2025-11-26 18:31:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:31:17] c7-7-35.aglt2.org
[2025-11-26 18:31:17] apptainer works
[2025-11-26 18:31:17] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:31:17] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:31:17] Starting ATLAS job with PandaID=6897998847
[2025-11-26 18:31:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:50:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:50:42] 2025-11-27 13:49:55,271 | INFO     | .. there are 62 such processes running
[2025-11-27 08:50:42] 2025-11-27 13:49:55,877 | INFO     | monitor loop #3240: job 0:6897998847 is in state 'finished'
[2025-11-27 08:50:42] 2025-11-27 13:49:55,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:50:42] 2025-11-27 13:49:56,273 | INFO     | time since job start (51477s) is within the limit (172800.0s)
[2025-11-27 08:50:42] 2025-11-27 13:49:58,280 | INFO     | time since job start (51479s) is within the limit (172800.0s)
[2025-11-27 08:50:42] 2025-11-27 13:49:58,412 | INFO     | monitor loop #3241: job 0:6897998847 is in state 'finished'
[2025-11-27 08:50:42] 2025-11-27 13:49:58,415 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:50:42] 2025-11-27 13:50:00,289 | INFO     | time since job start (51481s) is within the limit (172800.0s)
[2025-11-27 08:50:42] 2025-11-27 13:50:00,919 | INFO     | monitor loop #3242: job 0:6897998847 is in state 'finished'
[2025-11-27 08:50:42] 2025-11-27 13:50:00,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:50:42] 2025-11-27 13:50:02,297 | INFO     | time since job start (51483s) is within the limit (172800.0s)
[2025-11-27 08:50:42] 2025-11-27 13:50:03,425 | INFO     | monitor loop #3243: job 0:6897998847 is in state 'finished'
[2025-11-27 08:50:42] 2025-11-27 13:50:03,425 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:50:42] 2025-11-27 13:50:04,305 | INFO     | time since job start (51485s) is within the limit (172800.0s)
[2025-11-27 08:50:42] 2025-11-27 13:50:05,933 | INFO     | monitor loop #3244: job 0:6897998847 is in state 'finished'
[2025-11-27 08:50:42] 2025-11-27 13:50:05,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 08:50:42] 2025-11-27 13:50:06,325 | INFO     | time since job start (51487s) is within the limit (172800.0s)
[2025-11-27 08:50:42] 2025-11-27 13:50:07,550 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 08:50:42] 2025-11-27 13:50:07,556 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3141.982281249999
[2025-11-27 08:50:42] 2025-11-27 13:50:07,579 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6897998847/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 08:50:42] 2025-11-27 13:50:07,580 | INFO     | extracted standard info from prmon json
[2025-11-27 08:50:42] 2025-11-27 13:50:07,580 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 08:50:42] 2025-11-27 13:50:07,580 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 08:50:42] 2025-11-27 13:50:07,598 | INFO     | fitting pss+swap vs Time
[2025-11-27 08:50:42] 2025-11-27 13:50:07,603 | INFO     | sum of square deviations: 185761753014.0804
[2025-11-27 08:50:42] 2025-11-27 13:50:07,629 | INFO     | sum of deviations: 565202758687.8397
[2025-11-27 08:50:42] 2025-11-27 13:50:07,629 | INFO     | mean x: 1764225691.8351128
[2025-11-27 08:50:42] 2025-11-27 13:50:07,629 | INFO     | mean y: 2866511.8837485174
[2025-11-27 08:50:42] 2025-11-27 13:50:07,630 | INFO     | intersect: -5365005032.144943
[2025-11-27 08:50:42] 2025-11-27 13:50:07,630 | INFO     | chi2: 15.52755639828385
[2025-11-27 08:50:42] 2025-11-27 13:50:07,631 | INFO     | sum of square deviations: 182476129378.07083
[2025-11-27 08:50:42] 2025-11-27 13:50:07,662 | INFO     | sum of deviations: 863726410481.79
[2025-11-27 08:50:42] 2025-11-27 13:50:07,662 | INFO     | mean x: 1764225539.3400955
[2025-11-27 08:50:42] 2025-11-27 13:50:07,662 | INFO     | mean y: 2880363.625298329
[2025-11-27 08:50:42] 2025-11-27 13:50:07,662 | INFO     | intersect: -8347845824.87991
[2025-11-27 08:50:42] 2025-11-27 13:50:07,663 | INFO     | chi2: 11.863448920553989
[2025-11-27 08:50:42] 2025-11-27 13:50:07,663 | INFO     | current chi2=11.863448920553989 (change=23.597450775543976 %)
[2025-11-27 08:50:42] 2025-11-27 13:50:07,663 | INFO     | right removable region: 837
[2025-11-27 08:50:42] 2025-11-27 13:50:07,664 | INFO     | sum of square deviations: 182475699938.0709
[2025-11-27 08:50:42] 2025-11-27 13:50:07,693 | INFO     | sum of deviations: 247950818396.9527
[2025-11-27 08:50:42] 2025-11-27 13:50:07,694 | INFO     | mean x: 1764225844.3400955
[2025-11-27 08:50:42] 2025-11-27 13:50:07,694 | INFO     | mean y: 2881231.8317422434
[2025-11-27 08:50:42] 2025-11-27 13:50:07,694 | INFO     | intersect: -2394376277.4675317
[2025-11-27 08:50:42] 2025-11-27 13:50:07,695 | INFO     | chi2: 11.897987753465435
[2025-11-27 08:50:42] 2025-11-27 13:50:07,695 | INFO     | current chi2=11.897987753465435 (change=23.375015048855758 %)
[2025-11-27 08:50:42] 2025-11-27 13:50:07,695 | INFO     | left removable region: 10
[2025-11-27 08:50:42] 2025-11-27 13:50:07,695 | INFO     | sum of square deviations: 175383822271.4068
[2025-11-27 08:50:42] 2025-11-27 13:50:07,725 | INFO     | sum of deviations: 489221039681.6576
[2025-11-27 08:50:42] 2025-11-27 13:50:07,725 | INFO     | mean x: 1764225813.8500605
[2025-11-27 08:50:42] 2025-11-27 13:50:07,725 | INFO     | mean y: 2904092.84401451
[2025-11-27 08:50:42] 2025-11-27 13:50:07,725 | INFO     | intersect: -4918281770.862968
[2025-11-27 08:50:42] 2025-11-27 13:50:07,726 | INFO     | chi2: 6.6484503834701005
[2025-11-27 08:50:42] 2025-11-27 13:50:07,726 | INFO     | current memory leak: 2.79 B/s (using 827 data points, chi2=6.65)
[2025-11-27 08:50:42] 2025-11-27 13:50:07,727 | INFO     | could have reported an average CPU frequency of 3143 MHz (32 samples)
[2025-11-27 08:50:42] 2025-11-27 13:50:07,727 | INFO     | ..............................
[2025-11-27 08:50:42] 2025-11-27 13:50:07,727 | INFO     | . Timing measurements:
[2025-11-27 08:50:42] 2025-11-27 13:50:07,727 | INFO     | . get job = 0 s
[2025-11-27 08:50:42] 2025-11-27 13:50:07,727 | INFO     | . initial setup = 4 s
[2025-11-27 08:50:42] 2025-11-27 13:50:07,727 | INFO     | . payload setup = 29 s
[2025-11-27 08:50:42] 2025-11-27 13:50:07,727 | INFO     | . stage-in = 0 s
[2025-11-27 08:50:42] 2025-11-27 13:50:07,727 | INFO     | . payload execution = 51393 s
[2025-11-27 08:50:42] 2025-11-27 13:50:07,728 | INFO     | . stage-out = 4 s
[2025-11-27 08:50:42] 2025-11-27 13:50:07,728 | INFO     | . log creation = 1 s
[2025-11-27 08:50:42] 2025-11-27 13:50:07,728 | INFO     | ..............................
[2025-11-27 08:50:42] 2025-11-27 13:50:07,943 | INFO     | 
[2025-11-27 08:50:42] 2025-11-27 13:50:07,943 | INFO     | job summary report
[2025-11-27 08:50:42] 2025-11-27 13:50:07,943 | INFO     | --------------------------------------------------
[2025-11-27 08:50:42] 2025-11-27 13:50:07,943 | INFO     | PanDA job id: 6897998847
[2025-11-27 08:50:42] 2025-11-27 13:50:07,943 | INFO     | task id: 47556161
[2025-11-27 08:50:42] 2025-11-27 13:50:07,943 | INFO     | errors: (none)
[2025-11-27 08:50:42] 2025-11-27 13:50:07,943 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | pilot state: finished 
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | transexitcode: 0
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | exeerrorcode: 0
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | exeerrordiag: 
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | exitcode: 0
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | exitmsg: OK
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | cpuconsumptiontime: 202589 s
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | nevents: 1000
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | neventsw: 0
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | pid: 526148
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | pgrp: 526148
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | corecount: 8
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | event service: False
[2025-11-27 08:50:42] 2025-11-27 13:50:07,944 | INFO     | sizes: {0: 2284258, 1: 2284286, 12: 2284286, 15: 2284576, 22: 2284604, 51428: 2334087, 51432: 2343081, 51433: 2343137, 51448: 2343383}
[2025-11-27 08:50:42] 2025-11-27 13:50:07,945 | INFO     | --------------------------------------------------
[2025-11-27 08:50:42] 2025-11-27 13:50:07,945 | INFO     | 
[2025-11-27 08:50:42] 2025-11-27 13:50:07,945 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 08:50:42] 2025-11-27 13:50:08,027 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,027 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,027 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,028 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 08:50:42] 2025-11-27 13:50:08,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,029 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 08:50:42] 2025-11-27 13:50:08,029 | INFO     | job 6897998847 has completed (purged errors)
[2025-11-27 08:50:42] 2025-11-27 13:50:08,029 | INFO     | overall cleanup function is called
[2025-11-27 08:50:42] 2025-11-27 13:50:09,058 | INFO     | --- collectZombieJob: --- 10, [526148]
[2025-11-27 08:50:42] 2025-11-27 13:50:09,058 | INFO     | zombie collector waiting for pid 526148
[2025-11-27 08:50:42] 2025-11-27 13:50:09,058 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 08:50:42] 2025-11-27 13:50:09,058 | INFO     | collected zombie processes
[2025-11-27 08:50:42] 2025-11-27 13:50:09,058 | INFO     | will attempt to kill all subprocesses of pid=526148
[2025-11-27 08:50:42] 2025-11-27 13:50:10,414 | INFO     | process IDs to be killed: [526148] (in reverse order)
[2025-11-27 08:50:42] 2025-11-27 13:50:10,661 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:50:42] 2025-11-27 13:50:10,662 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:50:42] 2025-11-27 13:50:10,688 | INFO     | did not find any defunct processes belonging to 526148
[2025-11-27 08:50:42] 2025-11-27 13:50:10,714 | INFO     | did not find any defunct processes belonging to 526148
[2025-11-27 08:50:42] 2025-11-27 13:50:10,725 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:50:42] 2025-11-27 13:50:10,725 | INFO     | ready for new job
[2025-11-27 08:50:42] 2025-11-27 13:50:10,725 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:50:42] 2025-11-27 13:50:10,729 | INFO     | ***************************************
[2025-11-27 08:50:42] 2025-11-27 13:50:10,729 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:50:42] 2025-11-27 13:50:10,729 | INFO     | ***************************************
[2025-11-27 08:50:42] 2025-11-27 13:50:10,729 | INFO     | 
[2025-11-27 08:50:42] 2025-11-27 13:50:10,738 | INFO     | architecture information:
[2025-11-27 08:50:42] 2025-11-27 13:50:10,746 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:50:42] 2025-11-27 13:50:10,771 | INFO     | cat /etc/os-release:
[2025-11-27 08:50:42] NAME="CentOS Linux"
[2025-11-27 08:50:42] VERSION="7 (Core)"
[2025-11-27 08:50:42] ID="centos"
[2025-11-27 08:50:42] ID_LIKE="rhel fedora"
[2025-11-27 08:50:42] VERSION_ID="7"
[2025-11-27 08:50:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:50:42] ANSI_COLOR="0;31"
[2025-11-27 08:50:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:50:42] HOME_URL="https://www.centos.org/"
[2025-11-27 08:50:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:50:42] 
[2025-11-27 08:50:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:50:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:50:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:50:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:50:42] 
[2025-11-27 08:50:42] 2025-11-27 13:50:10,772 | INFO     | ***************************************
[2025-11-27 08:50:42] 2025-11-27 13:50:11,276 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 08:50:42] 2025-11-27 13:50:11,322 | INFO     | sufficient remaining disk space (67151855616 B)
[2025-11-27 08:50:42] 2025-11-27 13:50:11,323 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:50:42] 2025-11-27 13:50:11,323 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:50:42] 2025-11-27 13:50:11,323 | INFO     | update_server=False
[2025-11-27 08:50:42] 2025-11-27 13:50:11,323 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:50:42] 2025-11-27 13:50:11,323 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:50:42] 2025-11-27 13:50:11,924 | INFO     | all job control threads have been joined
[2025-11-27 08:50:42] 2025-11-27 13:50:11,971 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:50:42] 2025-11-27 13:50:11,971 | INFO     | aborting loop
[2025-11-27 08:50:42] 2025-11-27 13:50:12,194 | INFO     | all payload control threads have been joined
[2025-11-27 08:50:42] 2025-11-27 13:50:12,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:50:42] 2025-11-27 13:50:12,306 | INFO     | all data control threads have been joined
[2025-11-27 08:50:42] 2025-11-27 13:50:12,328 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:12,889 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:12,899 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:50:42] 2025-11-27 13:50:12,930 | INFO     | [job] control thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:12,977 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:13,003 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:13,004 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:13,049 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:13,150 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:13,200 | INFO     | [payload] control thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:13,233 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:13,312 | INFO     | [data] control thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:13,329 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:13,444 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:13,771 | INFO     | [job] validate thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:13,904 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:16,213 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:50:42] 2025-11-27 13:50:28,003 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:50:42] 2025-11-27 13:50:29,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520001005376)>', '<ExcThread(monitor, started 140519485191936)>']
[2025-11-27 08:50:42] 2025-11-27 13:50:34,035 | INFO     | all workflow threads have been joined
[2025-11-27 08:50:42] 2025-11-27 13:50:34,035 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:50:42] 2025-11-27 13:50:34,035 | INFO     | traces error code: 0
[2025-11-27 08:50:42] 2025-11-27 13:50:34,036 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:50:42] 2025-11-27 13:50:40,715 | INFO     | PID=516778 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 08:50:42] 2025-11-27 13:50:40,715 | INFO     | .. there are 62 such processes running
[2025-11-27 08:50:42] 2025-11-27 13:50:40,718 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:50:42] 2025-11-27 13:50:40,718 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:50:42] 2025-11-27 13:50:40,718 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:50:42] 2025-11-27 13:50:40,718 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:50:42] 2025-11-27 13:50:40,718 | INFO     | [monitor] control thread has ended
[2025-11-27 08:50:42] 2025-11-27 13:50:41,066 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:50:42] 2025-11-27 13:50:41,074 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:50:42] 2025-11-27 13:50:41,078 [wrapper] pilotpid: 516778
[2025-11-27 08:50:42] 2025-11-27 13:50:41,082 [wrapper] Pilot exit status: 0
[2025-11-27 08:50:42] 2025-11-27 13:50:41,148 [wrapper] pandaids: 6897998847
[2025-11-27 08:50:42] 2025-11-27 13:50:41,327 [wrapper] cleanup supervisor_pilot  795381 516779
[2025-11-27 08:50:42] 2025-11-27 13:50:41,332 [wrapper] Test setup, not cleaning
[2025-11-27 08:50:42] 2025-11-27 13:50:41,335 [wrapper] apfmon messages muted
[2025-11-27 08:50:42] 2025-11-27 13:50:41,339 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:50:42] 2025-11-27 13:50:41,341 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:50:42]  *** Error codes and diagnostics ***
[2025-11-27 08:50:42]     "exeErrorCode": 0,
[2025-11-27 08:50:42]     "exeErrorDiag": "",
[2025-11-27 08:50:42]     "pilotErrorCode": 0,
[2025-11-27 08:50:42]     "pilotErrorDiag": "",
[2025-11-27 08:50:42]  *** Listing of results directory ***
[2025-11-27 08:50:42] total 1321384
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:26 queuedata.json
[2025-11-27 08:50:42] -rwx------. 1 boincer umatlas     36292 Nov 25 21:29 runpilot2-wrapper.sh
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas       100 Nov 26 18:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:50:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 18:31 run_atlas
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas       105 Nov 26 18:31 job.xml
[2025-11-27 08:50:42] -rw-r--r--. 2 boincer umatlas 411531782 Nov 26 18:31 EVNT.47483658._002381.pool.root.1
[2025-11-27 08:50:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:31 start_atlas.sh
[2025-11-27 08:50:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 18:31 shared
[2025-11-27 08:50:42] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 18:31 input.tar.gz
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas         0 Nov 26 18:31 boinc_lockfile
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 18:31 pandaJob.out
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas        57 Nov 26 18:31 setup.sh.local
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas    991538 Nov 26 18:31 agis_schedconf.cvmfs.json
[2025-11-27 08:50:42] drwx------. 5 boincer umatlas      4096 Nov 26 18:31 pilot3
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas       533 Nov 27 08:29 boinc_task_state.xml
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 08:46 init_data.xml
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas 920160307 Nov 27 08:48 HITS.47556161._003631.pool.root.1
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas      1065 Nov 27 08:49 memory_monitor_summary.json
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas   1516240 Nov 27 08:49 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas   2035551 Nov 27 08:49 log.47556161._003631.job.log.tgz.1
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas      8614 Nov 27 08:50 heartbeat.json
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 08:50 boinc_mmap_file
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas        29 Nov 27 08:50 wrapper_checkpoint.txt
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas        95 Nov 27 08:50 pilot_heartbeat.json
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas       822 Nov 27 08:50 pilotlog.txt
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas   6705869 Nov 27 08:50 log.47556161._003631.job.log.1
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas       353 Nov 27 08:50 output.list
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas       620 Nov 27 08:50 runtime_log
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas   8765440 Nov 27 08:50 result.tar.gz
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 08:50 runtime_log.err
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas       662 Nov 27 08:50 N0aMDm4SKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxjMKDmqK42in.diag
[2025-11-27 08:50:42] -rw-r--r--. 1 boincer umatlas     21748 Nov 27 08:50 stderr.txt
[2025-11-27 08:50:42] HITS file was successfully produced:
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas 920160307 Nov 27 08:48 shared/HITS.pool.root.1
[2025-11-27 08:50:42]  *** Contents of shared directory: ***
[2025-11-27 08:50:42] total 1309648
[2025-11-27 08:50:42] -rw-r--r--. 2 boincer umatlas 411531782 Nov 26 18:31 ATLAS.root_0
[2025-11-27 08:50:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:31 start_atlas.sh
[2025-11-27 08:50:42] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 18:31 input.tar.gz
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas 920160307 Nov 27 08:48 HITS.pool.root.1
[2025-11-27 08:50:42] -rw-------. 1 boincer umatlas   8765440 Nov 27 08:50 result.tar.gz
08:50:43 (499233): run_atlas exited; CPU time 204230.689243
08:50:43 (499233): called boinc_finish(0)

</stderr_txt>
]]>

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