Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:19:21 (4164907): wrapper (7.7.26015): starting
18:19:21 (4164907): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 18:19:21] Arguments: --nthreads 8
[2025-11-26 18:19:21] Threads: 8
[2025-11-26 18:19:21] Checking for CVMFS
[2025-11-26 18:19:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:19:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:19:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:19:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:19:21] 2.13.3.0 11502 30655 330204 153340 2 315 23337846 32935936 61521 16776704 0 299420154 99.632 281694126 36640 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 18:19:21] CVMFS is ok
[2025-11-26 18:19:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:19:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:19:21] Further information can be found at the LHC@home message board.
[2025-11-26 18:19:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:19:21] Checking for apptainer binary...
[2025-11-26 18:19:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:19:21] Running /usr/bin/apptainer --version
[2025-11-26 18:19:21] apptainer version 1.4.4-1.el9
[2025-11-26 18:19:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:19:22] c7-2-15.aglt2.org
[2025-11-26 18:19:22] apptainer works
[2025-11-26 18:19:22] Set ATHENA_PROC_NUMBER=8
[2025-11-26 18:19:22] Set ATHENA_CORE_NUMBER=8
[2025-11-26 18:19:22] Starting ATLAS job with PandaID=6897881216
[2025-11-26 18:19:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:11:57]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:11:57] 2025-11-27 21:10:56,619 | INFO     | time since job start (78681s) is within the limit (172800.0s)
[2025-11-27 16:11:57] 2025-11-27 21:10:58,011 | INFO     | monitor loop #5029: job 0:6897881216 is in state 'finished'
[2025-11-27 16:11:57] 2025-11-27 21:10:58,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:11:57] 2025-11-27 21:10:58,649 | INFO     | time since job start (78683s) is within the limit (172800.0s)
[2025-11-27 16:11:57] 2025-11-27 21:11:00,516 | INFO     | monitor loop #5030: job 0:6897881216 is in state 'finished'
[2025-11-27 16:11:57] 2025-11-27 21:11:00,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:11:57] 2025-11-27 21:11:00,659 | INFO     | time since job start (78685s) is within the limit (172800.0s)
[2025-11-27 16:11:57] 2025-11-27 21:11:02,671 | INFO     | time since job start (78687s) is within the limit (172800.0s)
[2025-11-27 16:11:57] 2025-11-27 21:11:03,023 | INFO     | monitor loop #5031: job 0:6897881216 is in state 'finished'
[2025-11-27 16:11:57] 2025-11-27 21:11:03,024 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:11:57] 2025-11-27 21:11:04,681 | INFO     | time since job start (78689s) is within the limit (172800.0s)
[2025-11-27 16:11:57] 2025-11-27 21:11:05,560 | INFO     | monitor loop #5032: job 0:6897881216 is in state 'finished'
[2025-11-27 16:11:57] 2025-11-27 21:11:05,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:11:57] 2025-11-27 21:11:06,688 | INFO     | time since job start (78691s) is within the limit (172800.0s)
[2025-11-27 16:11:57] 2025-11-27 21:11:08,068 | INFO     | monitor loop #5033: job 0:6897881216 is in state 'finished'
[2025-11-27 16:11:57] 2025-11-27 21:11:08,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:11:57] 2025-11-27 21:11:08,696 | INFO     | time since job start (78693s) is within the limit (172800.0s)
[2025-11-27 16:11:57] 2025-11-27 21:11:09,799 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 16:11:57] 2025-11-27 21:11:09,805 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3352.612656250001
[2025-11-27 16:11:57] 2025-11-27 21:11:09,832 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6897881216/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:11:57] 2025-11-27 21:11:09,833 | INFO     | extracted standard info from prmon json
[2025-11-27 16:11:57] 2025-11-27 21:11:09,833 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:11:57] 2025-11-27 21:11:09,833 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:11:57] 2025-11-27 21:11:09,860 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:11:57] 2025-11-27 21:11:09,861 | INFO     | sum of square deviations: 665647809995.9502
[2025-11-27 16:11:57] 2025-11-27 21:11:09,894 | INFO     | sum of deviations: 1438289586900.8396
[2025-11-27 16:11:57] 2025-11-27 21:11:09,894 | INFO     | mean x: 1764238524.6728683
[2025-11-27 16:11:57] 2025-11-27 21:11:09,894 | INFO     | mean y: 2885637.186821705
[2025-11-27 16:11:57] 2025-11-27 21:11:09,894 | INFO     | intersect: -3809169117.206082
[2025-11-27 16:11:57] 2025-11-27 21:11:09,895 | INFO     | chi2: 14.45473388801562
[2025-11-27 16:11:57] 2025-11-27 21:11:09,896 | INFO     | sum of square deviations: 657938089681.545
[2025-11-27 16:11:57] 2025-11-27 21:11:09,926 | INFO     | sum of deviations: 1874285943964.7554
[2025-11-27 16:11:57] 2025-11-27 21:11:09,926 | INFO     | mean x: 1764238372.1774318
[2025-11-27 16:11:57] 2025-11-27 21:11:09,927 | INFO     | mean y: 2894260.246692607
[2025-11-27 16:11:57] 2025-11-27 21:11:09,927 | INFO     | intersect: -5022939073.670671
[2025-11-27 16:11:57] 2025-11-27 21:11:09,928 | INFO     | chi2: 11.183127663452096
[2025-11-27 16:11:57] 2025-11-27 21:11:09,928 | INFO     | current chi2=11.183127663452096 (change=22.633458698786583 %)
[2025-11-27 16:11:57] 2025-11-27 21:11:09,928 | INFO     | right removable region: 1284
[2025-11-27 16:11:57] 2025-11-27 21:11:09,929 | INFO     | sum of square deviations: 657937166751.5458
[2025-11-27 16:11:57] 2025-11-27 21:11:09,958 | INFO     | sum of deviations: 1070497514772.6163
[2025-11-27 16:11:57] 2025-11-27 21:11:09,958 | INFO     | mean x: 1764238677.1774318
[2025-11-27 16:11:57] 2025-11-27 21:11:09,958 | INFO     | mean y: 2892904.738521401
[2025-11-27 16:11:57] 2025-11-27 21:11:09,959 | INFO     | intersect: -2867613907.8023767
[2025-11-27 16:11:57] 2025-11-27 21:11:09,959 | INFO     | chi2: 12.081286236633337
[2025-11-27 16:11:57] 2025-11-27 21:11:09,960 | INFO     | current chi2=12.081286236633337 (change=16.419864037414765 %)
[2025-11-27 16:11:57] 2025-11-27 21:11:09,960 | INFO     | left removable region: 10
[2025-11-27 16:11:57] 2025-11-27 21:11:09,961 | INFO     | sum of square deviations: 641185150716.7823
[2025-11-27 16:11:57] 2025-11-27 21:11:09,990 | INFO     | sum of deviations: 1515613937035.2048
[2025-11-27 16:11:57] 2025-11-27 21:11:09,990 | INFO     | mean x: 1764238646.6852434
[2025-11-27 16:11:57] 2025-11-27 21:11:09,990 | INFO     | mean y: 2905330.2448979593
[2025-11-27 16:11:57] 2025-11-27 21:11:09,990 | INFO     | intersect: -4167348266.8371916
[2025-11-27 16:11:57] 2025-11-27 21:11:09,991 | INFO     | chi2: 7.925411768043255
[2025-11-27 16:11:57] 2025-11-27 21:11:09,991 | INFO     | current memory leak: 2.36 B/s (using 1274 data points, chi2=7.93)
[2025-11-27 16:11:57] 2025-11-27 21:11:09,992 | INFO     | could have reported an average CPU frequency of 3300 MHz (47 samples)
[2025-11-27 16:11:57] 2025-11-27 21:11:09,992 | INFO     | ..............................
[2025-11-27 16:11:57] 2025-11-27 21:11:09,993 | INFO     | . Timing measurements:
[2025-11-27 16:11:57] 2025-11-27 21:11:09,993 | INFO     | . get job = 0 s
[2025-11-27 16:11:57] 2025-11-27 21:11:09,993 | INFO     | . initial setup = 2 s
[2025-11-27 16:11:57] 2025-11-27 21:11:09,993 | INFO     | . payload setup = 8 s
[2025-11-27 16:11:57] 2025-11-27 21:11:09,993 | INFO     | . stage-in = 0 s
[2025-11-27 16:11:57] 2025-11-27 21:11:09,993 | INFO     | . payload execution = 78638 s
[2025-11-27 16:11:57] 2025-11-27 21:11:09,993 | INFO     | . stage-out = 6 s
[2025-11-27 16:11:57] 2025-11-27 21:11:09,993 | INFO     | . log creation = 1 s
[2025-11-27 16:11:57] 2025-11-27 21:11:09,993 | INFO     | ..............................
[2025-11-27 16:11:57] 2025-11-27 21:11:10,066 | INFO     | 
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | job summary report
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | --------------------------------------------------
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | PanDA job id: 6897881216
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | task id: 47556161
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | errors: (none)
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | pilot state: finished 
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | transexitcode: 0
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | exeerrorcode: 0
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | exeerrordiag: 
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | exitcode: 0
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | exitmsg: OK
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | cpuconsumptiontime: 185524 s
[2025-11-27 16:11:57] 2025-11-27 21:11:10,067 | INFO     | nevents: 1000
[2025-11-27 16:11:57] 2025-11-27 21:11:10,068 | INFO     | neventsw: 0
[2025-11-27 16:11:57] 2025-11-27 21:11:10,068 | INFO     | pid: 4176449
[2025-11-27 16:11:57] 2025-11-27 21:11:10,068 | INFO     | pgrp: 4176449
[2025-11-27 16:11:57] 2025-11-27 21:11:10,068 | INFO     | corecount: 8
[2025-11-27 16:11:57] 2025-11-27 21:11:10,068 | INFO     | event service: False
[2025-11-27 16:11:57] 2025-11-27 21:11:10,068 | INFO     | sizes: {0: 2284092, 1: 2284291, 7: 2284553, 11: 2284581, 78650: 2348049, 78651: 2348048, 78659: 2357282, 78677: 2357472}
[2025-11-27 16:11:57] 2025-11-27 21:11:10,068 | INFO     | --------------------------------------------------
[2025-11-27 16:11:57] 2025-11-27 21:11:10,068 | INFO     | 
[2025-11-27 16:11:57] 2025-11-27 21:11:10,068 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 16:11:57] 2025-11-27 21:11:10,086 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,086 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,086 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,086 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,086 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,086 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,087 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,087 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,087 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,087 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,087 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,087 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,087 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,087 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,087 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:11:57] 2025-11-27 21:11:10,087 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,087 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:11:57] 2025-11-27 21:11:10,088 | INFO     | job 6897881216 has completed (purged errors)
[2025-11-27 16:11:57] 2025-11-27 21:11:10,088 | INFO     | overall cleanup function is called
[2025-11-27 16:11:57] 2025-11-27 21:11:11,104 | INFO     | --- collectZombieJob: --- 10, [4176449]
[2025-11-27 16:11:57] 2025-11-27 21:11:11,105 | INFO     | zombie collector waiting for pid 4176449
[2025-11-27 16:11:57] 2025-11-27 21:11:11,105 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:11:57] 2025-11-27 21:11:11,105 | INFO     | collected zombie processes
[2025-11-27 16:11:57] 2025-11-27 21:11:11,105 | INFO     | will attempt to kill all subprocesses of pid=4176449
[2025-11-27 16:11:57] 2025-11-27 21:11:13,768 | INFO     | process IDs to be killed: [4176449] (in reverse order)
[2025-11-27 16:11:57] 2025-11-27 21:11:14,027 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:11:57] 2025-11-27 21:11:14,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:11:57] 2025-11-27 21:11:14,062 | INFO     | did not find any defunct processes belonging to 4176449
[2025-11-27 16:11:57] 2025-11-27 21:11:14,096 | INFO     | did not find any defunct processes belonging to 4176449
[2025-11-27 16:11:57] 2025-11-27 21:11:14,102 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:11:57] 2025-11-27 21:11:14,102 | INFO     | ready for new job
[2025-11-27 16:11:57] 2025-11-27 21:11:14,102 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:11:57] 2025-11-27 21:11:14,124 | INFO     | ***************************************
[2025-11-27 16:11:57] 2025-11-27 21:11:14,124 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:11:57] 2025-11-27 21:11:14,124 | INFO     | ***************************************
[2025-11-27 16:11:57] 2025-11-27 21:11:14,124 | INFO     | 
[2025-11-27 16:11:57] 2025-11-27 21:11:14,133 | INFO     | architecture information:
[2025-11-27 16:11:57] 2025-11-27 21:11:14,176 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:11:57] 2025-11-27 21:11:14,230 | INFO     | cat /etc/os-release:
[2025-11-27 16:11:57] NAME="CentOS Linux"
[2025-11-27 16:11:57] VERSION="7 (Core)"
[2025-11-27 16:11:57] ID="centos"
[2025-11-27 16:11:57] ID_LIKE="rhel fedora"
[2025-11-27 16:11:57] VERSION_ID="7"
[2025-11-27 16:11:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:11:57] ANSI_COLOR="0;31"
[2025-11-27 16:11:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:11:57] HOME_URL="https://www.centos.org/"
[2025-11-27 16:11:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:11:57] 
[2025-11-27 16:11:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:11:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:11:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:11:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:11:57] 
[2025-11-27 16:11:57] 2025-11-27 21:11:14,230 | INFO     | ***************************************
[2025-11-27 16:11:57] 2025-11-27 21:11:14,752 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 16:11:57] 2025-11-27 21:11:14,841 | INFO     | sufficient remaining disk space (67117252608 B)
[2025-11-27 16:11:57] 2025-11-27 21:11:14,841 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:11:57] 2025-11-27 21:11:14,841 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:11:57] 2025-11-27 21:11:14,841 | INFO     | update_server=False
[2025-11-27 16:11:57] 2025-11-27 21:11:14,841 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:11:57] 2025-11-27 21:11:14,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:11:57] 2025-11-27 21:11:14,842 | INFO     | aborting loop
[2025-11-27 16:11:57] 2025-11-27 21:11:15,127 | INFO     | all data control threads have been joined
[2025-11-27 16:11:57] 2025-11-27 21:11:15,143 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:11:57] 2025-11-27 21:11:15,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:11:57] 2025-11-27 21:11:15,861 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:15,861 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:15,895 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:15,925 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:16,004 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:16,009 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:16,054 | INFO     | all job control threads have been joined
[2025-11-27 16:11:57] 2025-11-27 21:11:16,137 | INFO     | [data] control thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:16,149 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:16,223 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:16,370 | INFO     | all payload control threads have been joined
[2025-11-27 16:11:57] 2025-11-27 21:11:16,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:11:57] 2025-11-27 21:11:16,633 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:17,009 | INFO     | [job] validate thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:17,063 | INFO     | [job] control thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:17,271 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:17,376 | INFO     | [payload] control thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:17,493 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:20,582 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:11:57] 2025-11-27 21:11:42,815 | INFO     | PID=4168762 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:11:57] 2025-11-27 21:11:42,836 | INFO     | .. there are 87 such processes running
[2025-11-27 16:11:57] 2025-11-27 21:11:42,846 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:11:57] 2025-11-27 21:11:42,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:11:57] 2025-11-27 21:11:42,847 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:11:57] 2025-11-27 21:11:49,844 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:11:57] 2025-11-27 21:11:51,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140350656894784)>', '<ExcThread(monitor, started 140349833983744)>']
[2025-11-27 16:11:57] 2025-11-27 21:11:51,911 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:11:57] 2025-11-27 21:11:51,912 | INFO     | [monitor] control thread has ended
[2025-11-27 16:11:57] 2025-11-27 21:11:56,448 | INFO     | all workflow threads have been joined
[2025-11-27 16:11:57] 2025-11-27 21:11:56,449 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:11:57] 2025-11-27 21:11:56,449 | INFO     | traces error code: 0
[2025-11-27 16:11:57] 2025-11-27 21:11:56,449 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:11:57] 2025-11-27 21:11:56,616 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:11:57] 2025-11-27 21:11:56,633 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:11:57] 2025-11-27 21:11:56,656 [wrapper] pilotpid: 4168762
[2025-11-27 16:11:57] 2025-11-27 21:11:56,673 [wrapper] Pilot exit status: 0
[2025-11-27 16:11:57] 2025-11-27 21:11:56,707 [wrapper] pandaids: 6897881216
[2025-11-27 16:11:57] 2025-11-27 21:11:56,884 [wrapper] cleanup supervisor_pilot  808780 4168763
[2025-11-27 16:11:57] 2025-11-27 21:11:56,887 [wrapper] Test setup, not cleaning
[2025-11-27 16:11:57] 2025-11-27 21:11:56,890 [wrapper] apfmon messages muted
[2025-11-27 16:11:57] 2025-11-27 21:11:56,923 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:11:57] 2025-11-27 21:11:56,967 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:11:57]  *** Error codes and diagnostics ***
[2025-11-27 16:11:57]     "exeErrorCode": 0,
[2025-11-27 16:11:57]     "exeErrorDiag": "",
[2025-11-27 16:11:57]     "pilotErrorCode": 0,
[2025-11-27 16:11:57]     "pilotErrorDiag": "",
[2025-11-27 16:11:57]  *** Listing of results directory ***
[2025-11-27 16:11:57] total 1322968
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:00 queuedata.json
[2025-11-27 16:11:57] -rwx------. 1 boincer umatlas     36292 Nov 25 21:05 runpilot2-wrapper.sh
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas       100 Nov 26 18:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:11:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 18:19 run_atlas
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas       105 Nov 26 18:19 job.xml
[2025-11-27 16:11:57] -rw-r--r--. 2 boincer umatlas 409181829 Nov 26 18:19 EVNT.47483658._002363.pool.root.1
[2025-11-27 16:11:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:19 start_atlas.sh
[2025-11-27 16:11:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 18:19 shared
[2025-11-27 16:11:57] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 18:19 input.tar.gz
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas         0 Nov 26 18:19 boinc_lockfile
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 18:19 pandaJob.out
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas        57 Nov 26 18:19 setup.sh.local
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas    991538 Nov 26 18:19 agis_schedconf.cvmfs.json
[2025-11-27 16:11:57] drwx------. 5 boincer umatlas      4096 Nov 26 18:19 pilot3
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas       533 Nov 27 15:40 boinc_task_state.xml
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 16:00 init_data.xml
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas 916153114 Nov 27 16:10 HITS.47556161._003455.pool.root.1
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas      1081 Nov 27 16:10 memory_monitor_summary.json
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:10 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas   2368953 Nov 27 16:10 log.47556161._003455.job.log.tgz.1
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas      8618 Nov 27 16:11 heartbeat.json
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas        95 Nov 27 16:11 pilot_heartbeat.json
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:11 boinc_mmap_file
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:11 wrapper_checkpoint.txt
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas      4824 Nov 27 16:11 pilotlog.txt
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas  10360177 Nov 27 16:11 log.47556161._003455.job.log.1
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas       353 Nov 27 16:11 output.list
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:11 runtime_log
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas  12748800 Nov 27 16:11 result.tar.gz
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 16:11 runtime_log.err
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas       664 Nov 27 16:11 RIyNDmD5Ji8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmihMKDmkXZg0m.diag
[2025-11-27 16:11:57] -rw-r--r--. 1 boincer umatlas     21775 Nov 27 16:11 stderr.txt
[2025-11-27 16:11:57] HITS file was successfully produced:
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas 916153114 Nov 27 16:10 shared/HITS.pool.root.1
[2025-11-27 16:11:57]  *** Contents of shared directory: ***
[2025-11-27 16:11:57] total 1307332
[2025-11-27 16:11:57] -rw-r--r--. 2 boincer umatlas 409181829 Nov 26 18:19 ATLAS.root_0
[2025-11-27 16:11:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:19 start_atlas.sh
[2025-11-27 16:11:57] -rw-r--r--. 2 boincer umatlas    590111 Nov 26 18:19 input.tar.gz
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas 916153114 Nov 27 16:10 HITS.pool.root.1
[2025-11-27 16:11:57] -rw-------. 1 boincer umatlas  12748800 Nov 27 16:11 result.tar.gz
16:12:18 (4164907): run_atlas exited; CPU time 188868.492497
16:12:18 (4164907): called boinc_finish(0)

</stderr_txt>
]]>

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