Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
02:22:46 (164156): wrapper (7.7.26015): starting
02:22:46 (164156): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 02:22:46] Arguments: --nthreads 12
[2025-12-02 02:22:46] Threads: 12
[2025-12-02 02:22:46] Checking for CVMFS
[2025-12-02 02:22:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 02:22:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 02:22:46] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 02:22:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 02:22:46] 2.13.3.0 4869 317 51636 153548 3 100 6181683 10240001 582 130560 0 1785421 99.996 16940 250 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-02 02:22:46] CVMFS is ok
[2025-12-02 02:22:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 02:22:46] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 02:22:46] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 02:22:46] Further information can be found at the LHC@home message board.
[2025-12-02 02:22:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 02:22:46] Checking for apptainer binary...
[2025-12-02 02:22:46] apptainer is not installed, using version from CVMFS
[2025-12-02 02:22:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 02:22:46] pots
[2025-12-02 02:22:46] apptainer works
[2025-12-02 02:22:46] Set ATHENA_PROC_NUMBER=12
[2025-12-02 02:22:46] Set ATHENA_CORE_NUMBER=12
[2025-12-02 02:22:46] Starting ATLAS job with PandaID=6897881034
[2025-12-02 02:22:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 02:28:58]  *** The last 200 lines of the pilot log: ***
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | WARNING  | wrong length of table data, x=[1764660189.0, 1764660250.0, 1764660311.0], y=[6694.0, 982882.0, 1002998.0] (must be same and length>=4)
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | could have reported an average CPU frequency of 3308 MHz (4 samples)
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | ..............................
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . Timing measurements:
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . get job = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . initial setup = 2 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . payload setup = 2 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . stage-in = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . payload execution = 166 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . stage-out = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . log creation = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | ..............................
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/7/PanDA_Pilot-6897881034/pilotlog.txt
[2025-12-02 02:28:58] 2025-12-02 07:27:57,270 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-02 02:28:58] - Log from pilotlog.txt -
[2025-12-02 02:28:58] 2025-12-02 07:27:57,262 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6897881034/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | INFO     | extracted standard info from prmon json
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | WARNING  | wrong length of table data, x=[1764660189.0, 1764660250.0, 1764660311.0], y=[6694.0, 982882.0, 1002998.0] (must be same and length>=4)
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | could have reported an average CPU frequency of 3308 MHz (4 samples)
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | ..............................
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . Timing measurements:
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . get job = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . initial setup = 2 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . payload setup = 2 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . stage-in = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . payload execution = 166 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . stage-out = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . log creation = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | ..............................
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/7/PanDA_Pilot-6897881034/pilotlog.txt
[2025-12-02 02:28:58] 2025-12-02 07:27:57,270 | WARNING  | 
[2025-12-02 02:28:58] [begin log extracts]
[2025-12-02 02:28:58] - Log from pilotlog.txt -
[2025-12-02 02:28:58] 2025-12-02 07:27:57,262 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6897881034/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | INFO     | extracted standard info from prmon json
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-02 02:28:58] 2025-12-02 07:27:57,263 | WARNING  | wrong length of table data, x=[1764660189.0, 1764660250.0, 1764660311.0], y=[6694.0, 982882.0, 1002998.0] (must be same and length>=4)
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | could have reported an average CPU frequency of 3308 MHz (4 samples)
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | ..............................
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . Timing measurements:
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . get job = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . initial setup = 2 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . payload setup = 2 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . stage-in = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . payload execution = 166 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . stage-out = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | . log creation = 0 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | ..............................
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-02 02:28:58] 2025-12-02 07:27:57,264 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/7/PanDA_Pilot-6897881034/pilotlog.txt
[2025-12-02 02:28:58] [end log extracts]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,271 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-12-02 02:28:58] 2025-12-02 07:27:57,271 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-02 02:28:58] 2025-12-02 07:27:57,294 | INFO     | 
[2025-12-02 02:28:58] 2025-12-02 07:27:57,294 | INFO     | job summary report
[2025-12-02 02:28:58] 2025-12-02 07:27:57,294 | INFO     | --------------------------------------------------
[2025-12-02 02:28:58] 2025-12-02 07:27:57,294 | INFO     | PanDA job id: 6897881034
[2025-12-02 02:28:58] 2025-12-02 07:27:57,294 | INFO     | task id: 47556161
[2025-12-02 02:28:58] 2025-12-02 07:27:57,295 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-02 02:25:50,049 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-02 02:28:58] 2025-12-02 07:27:57,295 | INFO     | error 2/2: 1165: Local output file is missing
[2025-12-02 02:28:58] 2025-12-02 07:27:57,295 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 02:28:58] 2025-12-02 07:27:57,295 | INFO     | pilot state: failed 
[2025-12-02 02:28:58] 2025-12-02 07:27:57,295 | INFO     | transexitcode: 65
[2025-12-02 02:28:58] 2025-12-02 07:27:57,295 | INFO     | exeerrorcode: 65
[2025-12-02 02:28:58] 2025-12-02 07:27:57,295 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current
[2025-12-02 02:28:58] 2025-12-02 07:27:57,295 | INFO     | exitcode: 65
[2025-12-02 02:28:58] 2025-12-02 07:27:57,295 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algo
[2025-12-02 02:28:58] 2025-12-02 07:27:57,295 | INFO     | cpuconsumptiontime: 24 s
[2025-12-02 02:28:58] 2025-12-02 07:27:57,296 | INFO     | nevents: 0
[2025-12-02 02:28:58] 2025-12-02 07:27:57,296 | INFO     | neventsw: 0
[2025-12-02 02:28:58] 2025-12-02 07:27:57,296 | INFO     | pid: 174386
[2025-12-02 02:28:58] 2025-12-02 07:27:57,296 | INFO     | pgrp: 174386
[2025-12-02 02:28:58] 2025-12-02 07:27:57,296 | INFO     | corecount: 12
[2025-12-02 02:28:58] 2025-12-02 07:27:57,296 | INFO     | event service: False
[2025-12-02 02:28:58] 2025-12-02 07:27:57,296 | INFO     | sizes: {0: 2284271, 2: 2284533, 11: 2284561, 172: 2312508, 175: 2312508, 293: 2312702}
[2025-12-02 02:28:58] 2025-12-02 07:27:57,296 | INFO     | --------------------------------------------------
[2025-12-02 02:28:58] 2025-12-02 07:27:57,296 | INFO     | 
[2025-12-02 02:28:58] 2025-12-02 07:27:57,296 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2025-12-02 02:28:58] 2025-12-02 07:27:57,313 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,313 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,313 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 02:28:58] 2025-12-02 07:27:57,314 | INFO     | job 6897881034 has completed (purged errors)
[2025-12-02 02:28:58] 2025-12-02 07:27:57,315 | INFO     | overall cleanup function is called
[2025-12-02 02:28:58] 2025-12-02 07:27:58,321 | INFO     | --- collectZombieJob: --- 10, [174386]
[2025-12-02 02:28:58] 2025-12-02 07:27:58,322 | INFO     | zombie collector waiting for pid 174386
[2025-12-02 02:28:58] 2025-12-02 07:27:58,322 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 02:28:58] 2025-12-02 07:27:58,322 | INFO     | collected zombie processes
[2025-12-02 02:28:58] 2025-12-02 07:27:58,322 | INFO     | will attempt to kill all subprocesses of pid=174386
[2025-12-02 02:28:58] 2025-12-02 07:27:58,398 | INFO     | process IDs to be killed: [174386] (in reverse order)
[2025-12-02 02:28:58] 2025-12-02 07:27:58,433 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 02:28:58] 2025-12-02 07:27:58,433 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 02:28:58] 2025-12-02 07:27:58,435 | INFO     | did not find any defunct processes belonging to 174386
[2025-12-02 02:28:58] 2025-12-02 07:27:58,436 | INFO     | did not find any defunct processes belonging to 174386
[2025-12-02 02:28:58] 2025-12-02 07:27:58,436 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 02:28:58] 2025-12-02 07:27:58,436 | INFO     | ready for new job
[2025-12-02 02:28:58] 2025-12-02 07:27:58,436 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 02:28:58] 2025-12-02 07:27:58,437 | INFO     | ***************************************
[2025-12-02 02:28:58] 2025-12-02 07:27:58,437 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 02:28:58] 2025-12-02 07:27:58,437 | INFO     | ***************************************
[2025-12-02 02:28:58] 2025-12-02 07:27:58,437 | INFO     | 
[2025-12-02 02:28:58] 2025-12-02 07:27:58,437 | INFO     | architecture information:
[2025-12-02 02:28:58] 2025-12-02 07:27:58,438 | INFO     | executing command: cat /etc/os-release
[2025-12-02 02:28:58] 2025-12-02 07:27:58,447 | INFO     | cat /etc/os-release:
[2025-12-02 02:28:58] NAME="CentOS Linux"
[2025-12-02 02:28:58] VERSION="7 (Core)"
[2025-12-02 02:28:58] ID="centos"
[2025-12-02 02:28:58] ID_LIKE="rhel fedora"
[2025-12-02 02:28:58] VERSION_ID="7"
[2025-12-02 02:28:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 02:28:58] ANSI_COLOR="0;31"
[2025-12-02 02:28:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 02:28:58] HOME_URL="https://www.centos.org/"
[2025-12-02 02:28:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 02:28:58] 
[2025-12-02 02:28:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 02:28:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 02:28:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 02:28:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 02:28:58] 
[2025-12-02 02:28:58] 2025-12-02 07:27:58,447 | INFO     | ***************************************
[2025-12-02 02:28:58] 2025-12-02 07:27:58,949 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2025-12-02 02:28:58] 2025-12-02 07:27:58,965 | INFO     | sufficient remaining disk space (443840200704 B)
[2025-12-02 02:28:58] 2025-12-02 07:27:58,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 02:28:58] 2025-12-02 07:27:58,965 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 02:28:58] 2025-12-02 07:27:58,966 | INFO     | update_server=False
[2025-12-02 02:28:58] 2025-12-02 07:27:58,966 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 02:28:58] 2025-12-02 07:27:58,966 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-02 02:28:58] 2025-12-02 07:27:58,966 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 02:28:58] 2025-12-02 07:27:58,966 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:28:58] 2025-12-02 07:27:58,967 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 02:28:58] 2025-12-02 07:27:58,967 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 02:28:58] 2025-12-02 07:27:58,967 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 02:28:58] 2025-12-02 07:27:59,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:28:58] 2025-12-02 07:27:59,221 | INFO     | aborting loop
[2025-12-02 02:28:58] 2025-12-02 07:27:59,428 | INFO     | all data control threads have been joined
[2025-12-02 02:28:58] 2025-12-02 07:27:59,649 | INFO     | all payload control threads have been joined
[2025-12-02 02:28:58] 2025-12-02 07:27:59,710 | INFO     | all job control threads have been joined
[2025-12-02 02:28:58] 2025-12-02 07:27:59,879 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 02:28:58] 2025-12-02 07:27:59,970 | INFO     | [job] retrieve thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:27:59,971 | INFO     | [job] queue monitor thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:00,089 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:00,226 | INFO     | [job] job monitor thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:00,410 | INFO     | [data] copytool_in thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:00,433 | INFO     | [data] control thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:00,478 | INFO     | [job] validate thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:00,559 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:00,569 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:00,654 | INFO     | [payload] control thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:00,715 | INFO     | [job] control thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:00,819 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:01,068 | INFO     | [payload] failed_post thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:01,195 | INFO     | [payload] validate_post thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:01,884 | INFO     | [data] copytool_out thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:02,972 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 02:28:58] 2025-12-02 07:28:52,782 | INFO     | [monitor] cgroup control has ended
[2025-12-02 02:28:58] 2025-12-02 07:28:53,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139079399577408)>', '<ExcThread(monitor, started 139079052142336)>']
[2025-12-02 02:28:58] 2025-12-02 07:28:54,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 02:28:58] 2025-12-02 07:28:54,240 | INFO     | [monitor] control thread has ended
[2025-12-02 02:28:58] 2025-12-02 07:28:58,272 | INFO     | all workflow threads have been joined
[2025-12-02 02:28:58] 2025-12-02 07:28:58,273 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 02:28:58] 2025-12-02 07:28:58,273 | INFO     | traces error code: 0
[2025-12-02 02:28:58] 2025-12-02 07:28:58,273 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 02:28:58] 2025-12-02 07:28:58,322 [wrapper] ==== pilot stdout END ====
[2025-12-02 02:28:58] 2025-12-02 07:28:58,325 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 02:28:58] 2025-12-02 07:28:58,327 [wrapper] pilotpid: 167884
[2025-12-02 02:28:58] 2025-12-02 07:28:58,331 [wrapper] Pilot exit status: 0
[2025-12-02 02:28:58] 2025-12-02 07:28:58,339 [wrapper] pandaids: 6897881034
[2025-12-02 02:28:58] 2025-12-02 07:28:58,356 [wrapper] cleanup supervisor_pilot  167890 167885
[2025-12-02 02:28:58] 2025-12-02 07:28:58,358 [wrapper] Test setup, not cleaning
[2025-12-02 02:28:58] 2025-12-02 07:28:58,361 [wrapper] apfmon messages muted
[2025-12-02 02:28:58] 2025-12-02 07:28:58,363 [wrapper] ==== wrapper stdout END ====
[2025-12-02 02:28:58] 2025-12-02 07:28:58,366 [wrapper] ==== wrapper stderr END ====
[2025-12-02 02:28:58]  *** Error codes and diagnostics ***
[2025-12-02 02:28:58]     "exeErrorCode": 65,
[2025-12-02 02:28:58]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
[2025-12-02 02:28:58]     "pilotErrorCode": 1305,
[2025-12-02 02:28:58]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
[2025-12-02 02:28:58]  *** Listing of results directory ***
[2025-12-02 02:28:58] total 404704
[2025-12-02 02:28:58] -rw-r--r-- 1 root root    576529 Nov 25 20:44 pilot3.tar.gz
[2025-12-02 02:28:58] -rwx------ 1 4871 1028     36292 Nov 25 20:52 runpilot2-wrapper.sh
[2025-12-02 02:28:58] -rw-r--r-- 1 root root      5112 Nov 25 20:52 queuedata.json
[2025-12-02 02:28:58] -rw-r--r-- 1 root root       100 Dec  2 02:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 02:28:58] -rwxr-xr-x 1 root root      7986 Dec  2 02:22 run_atlas
[2025-12-02 02:28:58] -rw-r--r-- 1 root root       105 Dec  2 02:22 job.xml
[2025-12-02 02:28:58] -rw-r--r-- 2 root root 410151050 Dec  2 02:22 EVNT.47483658._002358.pool.root.1
[2025-12-02 02:28:58] -rw-r--r-- 1 root root      9318 Dec  2 02:22 init_data.xml
[2025-12-02 02:28:58] drwxrwx--x 2 root root      4096 Dec  2 02:22 shared
[2025-12-02 02:28:58] -rw-r--r-- 2 root root    590095 Dec  2 02:22 input.tar.gz
[2025-12-02 02:28:58] -rw-r--r-- 2 root root     15847 Dec  2 02:22 start_atlas.sh
[2025-12-02 02:28:58] -rw-r--r-- 1 root root         0 Dec  2 02:22 boinc_lockfile
[2025-12-02 02:28:58] -rw-r--r-- 1 root root      2785 Dec  2 02:22 pandaJob.out
[2025-12-02 02:28:58] -rw------- 1 root root    990249 Dec  2 02:22 agis_schedconf.cvmfs.json
[2025-12-02 02:28:58] -rw------- 1 root root   1516240 Dec  2 02:22 agis_ddmendpoints.agis.ALL.json
[2025-12-02 02:28:58] drwxr-xr-x 5  320  320      4096 Dec  2 02:22 pilot3
[2025-12-02 02:28:58] -rw------- 1 root root       999 Dec  2 02:25 memory_monitor_summary.json
[2025-12-02 02:28:58] -rw------- 1 root root     67854 Dec  2 02:25 log.47556161._003402.job.log.tgz.1
[2025-12-02 02:28:58] -rw-r--r-- 1 root root       524 Dec  2 02:25 boinc_task_state.xml
[2025-12-02 02:28:58] -rw------- 1 root root        95 Dec  2 02:27 pilot_heartbeat.json
[2025-12-02 02:28:58] -rw------- 1 root root      9134 Dec  2 02:27 heartbeat.json
[2025-12-02 02:28:58] -rw-r--r-- 1 root root      8192 Dec  2 02:28 boinc_mmap_file
[2025-12-02 02:28:58] -rw-r--r-- 1 root root        23 Dec  2 02:28 wrapper_checkpoint.txt
[2025-12-02 02:28:58] -rw------- 1 root root      4560 Dec  2 02:28 pilotlog.txt
[2025-12-02 02:28:58] -rw------- 1 root root    108730 Dec  2 02:28 log.47556161._003402.job.log.1
[2025-12-02 02:28:58] -rw------- 1 root root       186 Dec  2 02:28 output.list
[2025-12-02 02:28:58] -rw-r--r-- 1 root root       620 Dec  2 02:28 runtime_log
[2025-12-02 02:28:58] -rw------- 1 root root    194560 Dec  2 02:28 result.tar.gz
[2025-12-02 02:28:58] -rw-r--r-- 1 root root      8708 Dec  2 02:28 runtime_log.err
[2025-12-02 02:28:58] -rw------- 1 root root       624 Dec  2 02:28 AjfNDmItJi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRgMKDmxuIu0m.diag
[2025-12-02 02:28:58] -rw-r--r-- 1 root root     22606 Dec  2 02:28 stderr.txt
[2025-12-02 02:28:58] No HITS result produced
[2025-12-02 02:28:58]  *** Contents of shared directory: ***
[2025-12-02 02:28:58] total 401332
[2025-12-02 02:28:58] -rw-r--r-- 2 root root 410151050 Dec  2 02:22 ATLAS.root_0
[2025-12-02 02:28:58] -rw-r--r-- 2 root root    590095 Dec  2 02:22 input.tar.gz
[2025-12-02 02:28:58] -rw-r--r-- 2 root root     15847 Dec  2 02:22 start_atlas.sh
[2025-12-02 02:28:58] -rw------- 1 root root    194560 Dec  2 02:28 result.tar.gz
02:28:59 (164156): run_atlas exited; CPU time 24.471279
02:28:59 (164156): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN