Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:42:57 (658): wrapper (7.7.26015): starting
17:42:57 (658): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:42:57] Arguments: --nthreads 8
[2025-11-26 17:42:57] Threads: 8
[2025-11-26 17:42:57] Checking for CVMFS
[2025-11-26 17:42:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:42:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:42:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:42:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:42:58] 2.11.2.0 21766 118313 142512 153337 0 81 16842106 18432000 1904 130560 0 86346274 99.975 4910613 27109 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 17:42:58] CVMFS is ok
[2025-11-26 17:42:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:42:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:42:58] Further information can be found at the LHC@home message board.
[2025-11-26 17:42:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:42:58] Checking for apptainer binary...
[2025-11-26 17:42:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:42:58] Running /usr/bin/apptainer --version
[2025-11-26 17:42:58] apptainer version 1.3.2-1.el7
[2025-11-26 17:42:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:42:58] c-206-18.aglt2.org
[2025-11-26 17:42:58] apptainer works
[2025-11-26 17:42:58] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:42:58] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:42:58] Starting ATLAS job with PandaID=6897881110
[2025-11-26 17:42:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:04:12]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:04:12] 2025-11-27 18:03:07,805 | INFO     | time since job start (69597s) is within the limit (172800.0s)
[2025-11-27 13:04:12] 2025-11-27 18:03:08,626 | INFO     | monitor loop #4984: job 0:6897881110 is in state 'finished'
[2025-11-27 13:04:12] 2025-11-27 18:03:08,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:04:12] 2025-11-27 18:03:08,874 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 13:04:12] 2025-11-27 18:03:08,877 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.125
[2025-11-27 13:04:12] 2025-11-27 18:03:08,880 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897881110/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:04:12] 2025-11-27 18:03:08,880 | INFO     | extracted standard info from prmon json
[2025-11-27 13:04:12] 2025-11-27 18:03:08,880 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:04:12] 2025-11-27 18:03:08,880 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:04:12] 2025-11-27 18:03:08,896 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:04:12] 2025-11-27 18:03:08,897 | INFO     | sum of square deviations: 460610267793.25635
[2025-11-27 13:04:12] 2025-11-27 18:03:08,923 | INFO     | sum of deviations: 2209389679362.9307
[2025-11-27 13:04:12] 2025-11-27 18:03:08,924 | INFO     | mean x: 1764231785.5836985
[2025-11-27 13:04:12] 2025-11-27 18:03:08,924 | INFO     | mean y: 2872079.7703768625
[2025-11-27 13:04:12] 2025-11-27 18:03:08,924 | INFO     | intersect: -8459543484.144513
[2025-11-27 13:04:12] 2025-11-27 18:03:08,926 | INFO     | chi2: 5.5513766941034755
[2025-11-27 13:04:12] 2025-11-27 18:03:08,927 | INFO     | sum of square deviations: 454581595091.5458
[2025-11-27 13:04:12] 2025-11-27 18:03:08,972 | INFO     | sum of deviations: 2556088280575.514
[2025-11-27 13:04:12] 2025-11-27 18:03:08,973 | INFO     | mean x: 1764231633.0862677
[2025-11-27 13:04:12] 2025-11-27 18:03:08,973 | INFO     | mean y: 2880845.045774648
[2025-11-27 13:04:12] 2025-11-27 18:03:08,973 | INFO     | intersect: -9917300372.683155
[2025-11-27 13:04:12] 2025-11-27 18:03:08,975 | INFO     | chi2: 2.8486027068652433
[2025-11-27 13:04:12] 2025-11-27 18:03:08,975 | INFO     | current chi2=2.8486027068652433 (change=48.68655355542791 %)
[2025-11-27 13:04:12] 2025-11-27 18:03:08,976 | INFO     | sum of square deviations: 448605760589.8198
[2025-11-27 13:04:12] 2025-11-27 18:03:09,021 | INFO     | sum of deviations: 2684824236824.302
[2025-11-27 13:04:12] 2025-11-27 18:03:09,021 | INFO     | mean x: 1764231480.5888593
[2025-11-27 13:04:12] 2025-11-27 18:03:09,021 | INFO     | mean y: 2884128.57913351
[2025-11-27 13:04:12] 2025-11-27 18:03:09,022 | INFO     | intersect: -10555721789.066055
[2025-11-27 13:04:12] 2025-11-27 18:03:09,023 | INFO     | chi2: 2.3633219494488036
[2025-11-27 13:04:12] 2025-11-27 18:03:09,023 | INFO     | current chi2=2.3633219494488036 (change=17.035747254150053 %)
[2025-11-27 13:04:12] 2025-11-27 18:03:09,024 | INFO     | right removable region: 1130
[2025-11-27 13:04:12] 2025-11-27 18:03:09,025 | INFO     | sum of square deviations: 454581188831.5458
[2025-11-27 13:04:12] 2025-11-27 18:03:09,071 | INFO     | sum of deviations: 1913416462095.021
[2025-11-27 13:04:12] 2025-11-27 18:03:09,071 | INFO     | mean x: 1764231938.0862677
[2025-11-27 13:04:12] 2025-11-27 18:03:09,071 | INFO     | mean y: 2879557.693661972
[2025-11-27 13:04:12] 2025-11-27 18:03:09,071 | INFO     | intersect: -7423099598.999965
[2025-11-27 13:04:12] 2025-11-27 18:03:09,073 | INFO     | chi2: 3.519428934584133
[2025-11-27 13:04:12] 2025-11-27 18:03:09,073 | INFO     | current chi2=3.519428934584133 (change=36.602591960254166 %)
[2025-11-27 13:04:12] 2025-11-27 18:03:09,075 | INFO     | sum of square deviations: 448605086662.1711
[2025-11-27 13:04:12] 2025-11-27 18:03:09,120 | INFO     | sum of deviations: 1839739362916.1108
[2025-11-27 13:04:12] 2025-11-27 18:03:09,120 | INFO     | mean x: 1764232090.587091
[2025-11-27 13:04:12] 2025-11-27 18:03:09,120 | INFO     | mean y: 2881437.445623342
[2025-11-27 13:04:12] 2025-11-27 18:03:09,120 | INFO     | intersect: -7232273309.734267
[2025-11-27 13:04:12] 2025-11-27 18:03:09,122 | INFO     | chi2: 3.4717285000306224
[2025-11-27 13:04:12] 2025-11-27 18:03:09,122 | INFO     | current chi2=3.4717285000306224 (change=1.3553458654833512 %)
[2025-11-27 13:04:12] 2025-11-27 18:03:09,122 | INFO     | left removable region: 20
[2025-11-27 13:04:12] 2025-11-27 18:03:09,124 | INFO     | sum of square deviations: 424077992088.627
[2025-11-27 13:04:12] 2025-11-27 18:03:09,161 | INFO     | sum of deviations: 2228709560053.5195
[2025-11-27 13:04:12] 2025-11-27 18:03:09,161 | INFO     | mean x: 1764232060.091892
[2025-11-27 13:04:12] 2025-11-27 18:03:09,161 | INFO     | mean y: 2896697.0243243244
[2025-11-27 13:04:12] 2025-11-27 18:03:09,161 | INFO     | intersect: -9268890407.78253
[2025-11-27 13:04:12] 2025-11-27 18:03:09,162 | INFO     | chi2: 0.214108333925378
[2025-11-27 13:04:12] 2025-11-27 18:03:09,163 | INFO     | current memory leak: 5.26 B/s (using 1110 data points, chi2=0.21)
[2025-11-27 13:04:12] 2025-11-27 18:03:09,163 | INFO     | could have reported an average CPU frequency of 2631 MHz (41 samples)
[2025-11-27 13:04:12] 2025-11-27 18:03:09,163 | INFO     | ..............................
[2025-11-27 13:04:12] 2025-11-27 18:03:09,164 | INFO     | . Timing measurements:
[2025-11-27 13:04:12] 2025-11-27 18:03:09,164 | INFO     | . get job = 0 s
[2025-11-27 13:04:12] 2025-11-27 18:03:09,164 | INFO     | . initial setup = 2 s
[2025-11-27 13:04:12] 2025-11-27 18:03:09,164 | INFO     | . payload setup = 5 s
[2025-11-27 13:04:12] 2025-11-27 18:03:09,164 | INFO     | . stage-in = 0 s
[2025-11-27 13:04:12] 2025-11-27 18:03:09,164 | INFO     | . payload execution = 69568 s
[2025-11-27 13:04:12] 2025-11-27 18:03:09,164 | INFO     | . stage-out = 4 s
[2025-11-27 13:04:12] 2025-11-27 18:03:09,164 | INFO     | . log creation = 0 s
[2025-11-27 13:04:12] 2025-11-27 18:03:09,164 | INFO     | ..............................
[2025-11-27 13:04:12] 2025-11-27 18:03:09,308 | INFO     | 
[2025-11-27 13:04:12] 2025-11-27 18:03:09,308 | INFO     | job summary report
[2025-11-27 13:04:12] 2025-11-27 18:03:09,308 | INFO     | --------------------------------------------------
[2025-11-27 13:04:12] 2025-11-27 18:03:09,308 | INFO     | PanDA job id: 6897881110
[2025-11-27 13:04:12] 2025-11-27 18:03:09,308 | INFO     | task id: 47556161
[2025-11-27 13:04:12] 2025-11-27 18:03:09,308 | INFO     | errors: (none)
[2025-11-27 13:04:12] 2025-11-27 18:03:09,309 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:04:12] 2025-11-27 18:03:09,309 | INFO     | pilot state: finished 
[2025-11-27 13:04:12] 2025-11-27 18:03:09,309 | INFO     | transexitcode: 0
[2025-11-27 13:04:12] 2025-11-27 18:03:09,309 | INFO     | exeerrorcode: 0
[2025-11-27 13:04:12] 2025-11-27 18:03:09,309 | INFO     | exeerrordiag: 
[2025-11-27 13:04:12] 2025-11-27 18:03:09,309 | INFO     | exitcode: 0
[2025-11-27 13:04:12] 2025-11-27 18:03:09,309 | INFO     | exitmsg: OK
[2025-11-27 13:04:12] 2025-11-27 18:03:09,309 | INFO     | cpuconsumptiontime: 536363 s
[2025-11-27 13:04:12] 2025-11-27 18:03:09,309 | INFO     | nevents: 1000
[2025-11-27 13:04:12] 2025-11-27 18:03:09,309 | INFO     | neventsw: 0
[2025-11-27 13:04:12] 2025-11-27 18:03:09,310 | INFO     | pid: 11104
[2025-11-27 13:04:12] 2025-11-27 18:03:09,310 | INFO     | pgrp: 11104
[2025-11-27 13:04:12] 2025-11-27 18:03:09,310 | INFO     | corecount: 8
[2025-11-27 13:04:12] 2025-11-27 18:03:09,310 | INFO     | event service: False
[2025-11-27 13:04:12] 2025-11-27 18:03:09,310 | INFO     | sizes: {0: 2284037, 1: 2284292, 4: 2284554, 12: 2284582, 69574: 2340953, 69575: 2340952, 69580: 2350186, 69584: 2350472}
[2025-11-27 13:04:12] 2025-11-27 18:03:09,310 | INFO     | --------------------------------------------------
[2025-11-27 13:04:12] 2025-11-27 18:03:09,310 | INFO     | 
[2025-11-27 13:04:12] 2025-11-27 18:03:09,310 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 13:04:12] 2025-11-27 18:03:09,329 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,330 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,330 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,330 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,331 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,331 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,331 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:04:12] 2025-11-27 18:03:09,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:04:12] 2025-11-27 18:03:09,333 | INFO     | job 6897881110 has completed (purged errors)
[2025-11-27 13:04:12] 2025-11-27 18:03:09,333 | INFO     | overall cleanup function is called
[2025-11-27 13:04:12] 2025-11-27 18:03:10,350 | INFO     | --- collectZombieJob: --- 10, [11104]
[2025-11-27 13:04:12] 2025-11-27 18:03:10,350 | INFO     | zombie collector waiting for pid 11104
[2025-11-27 13:04:12] 2025-11-27 18:03:10,350 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:04:12] 2025-11-27 18:03:10,351 | INFO     | collected zombie processes
[2025-11-27 13:04:12] 2025-11-27 18:03:10,351 | INFO     | will attempt to kill all subprocesses of pid=11104
[2025-11-27 13:04:12] 2025-11-27 18:03:10,520 | INFO     | process IDs to be killed: [11104] (in reverse order)
[2025-11-27 13:04:12] 2025-11-27 18:03:10,581 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:04:12] 2025-11-27 18:03:10,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:04:12] 2025-11-27 18:03:10,587 | INFO     | did not find any defunct processes belonging to 11104
[2025-11-27 13:04:12] 2025-11-27 18:03:10,589 | INFO     | did not find any defunct processes belonging to 11104
[2025-11-27 13:04:12] 2025-11-27 18:03:10,591 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:04:12] 2025-11-27 18:03:10,591 | INFO     | ready for new job
[2025-11-27 13:04:12] 2025-11-27 18:03:10,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:04:12] 2025-11-27 18:03:10,594 | INFO     | ***************************************
[2025-11-27 13:04:12] 2025-11-27 18:03:10,595 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:04:12] 2025-11-27 18:03:10,595 | INFO     | ***************************************
[2025-11-27 13:04:12] 2025-11-27 18:03:10,595 | INFO     | 
[2025-11-27 13:04:12] 2025-11-27 18:03:10,596 | INFO     | architecture information:
[2025-11-27 13:04:12] 2025-11-27 18:03:10,596 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:04:12] 2025-11-27 18:03:10,619 | INFO     | cat /etc/os-release:
[2025-11-27 13:04:12] NAME="CentOS Linux"
[2025-11-27 13:04:12] VERSION="7 (Core)"
[2025-11-27 13:04:12] ID="centos"
[2025-11-27 13:04:12] ID_LIKE="rhel fedora"
[2025-11-27 13:04:12] VERSION_ID="7"
[2025-11-27 13:04:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:04:12] ANSI_COLOR="0;31"
[2025-11-27 13:04:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:04:12] HOME_URL="https://www.centos.org/"
[2025-11-27 13:04:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:04:12] 
[2025-11-27 13:04:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:04:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:04:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:04:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:04:12] 
[2025-11-27 13:04:12] 2025-11-27 18:03:10,620 | INFO     | ***************************************
[2025-11-27 13:04:12] 2025-11-27 18:03:11,123 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 13:04:12] 2025-11-27 18:03:11,144 | INFO     | sufficient remaining disk space (26482835456 B)
[2025-11-27 13:04:12] 2025-11-27 18:03:11,145 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:04:12] 2025-11-27 18:03:11,145 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:04:12] 2025-11-27 18:03:11,145 | INFO     | update_server=False
[2025-11-27 13:04:12] 2025-11-27 18:03:11,145 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:04:12] 2025-11-27 18:03:11,146 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:04:12] 2025-11-27 18:03:11,146 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:04:12] 2025-11-27 18:03:11,146 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:04:12] 2025-11-27 18:03:11,702 | INFO     | all job control threads have been joined
[2025-11-27 13:04:12] 2025-11-27 18:03:11,781 | INFO     | all data control threads have been joined
[2025-11-27 13:04:12] 2025-11-27 18:03:11,995 | INFO     | all payload control threads have been joined
[2025-11-27 13:04:12] 2025-11-27 18:03:12,135 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:04:12] 2025-11-27 18:03:12,135 | INFO     | aborting loop
[2025-11-27 13:04:12] 2025-11-27 18:03:12,150 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:12,151 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:12,229 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:12,316 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:12,361 | INFO     | [job] validate thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:12,484 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:12,629 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:12,707 | INFO     | [job] control thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:12,786 | INFO     | [data] control thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:13,001 | INFO     | [payload] control thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:13,020 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:13,140 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:13,151 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:13,319 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:13,590 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:15,154 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:04:12] 2025-11-27 18:03:40,991 | INFO     | PID=4640 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 13:04:12] 2025-11-27 18:03:40,991 | INFO     | .. there are 3 such processes running
[2025-11-27 13:04:12] 2025-11-27 18:03:40,991 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:04:12] 2025-11-27 18:03:40,991 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:04:12] 2025-11-27 18:03:40,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:04:12] 2025-11-27 18:04:05,426 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:04:12] 2025-11-27 18:04:06,932 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140114222839616)>', '<ExcThread(monitor, started 140114004244224)>']
[2025-11-27 13:04:12] 2025-11-27 18:04:07,111 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:04:12] 2025-11-27 18:04:07,111 | INFO     | [monitor] control thread has ended
[2025-11-27 13:04:12] 2025-11-27 18:04:11,934 | INFO     | all workflow threads have been joined
[2025-11-27 13:04:12] 2025-11-27 18:04:11,934 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:04:12] 2025-11-27 18:04:11,934 | INFO     | traces error code: 0
[2025-11-27 13:04:12] 2025-11-27 18:04:11,935 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:04:12] 2025-11-27 18:04:12,055 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:04:12] 2025-11-27 18:04:12,057 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:04:12] 2025-11-27 18:04:12,059 [wrapper] pilotpid: 4640
[2025-11-27 13:04:12] 2025-11-27 18:04:12,060 [wrapper] Pilot exit status: 0
[2025-11-27 13:04:12] 2025-11-27 18:04:12,070 [wrapper] pandaids: 6897881110
[2025-11-27 13:04:12] 2025-11-27 18:04:12,099 [wrapper] cleanup supervisor_pilot 15589 4641
[2025-11-27 13:04:12] 2025-11-27 18:04:12,101 [wrapper] Test setup, not cleaning
[2025-11-27 13:04:12] 2025-11-27 18:04:12,109 [wrapper] apfmon messages muted
[2025-11-27 13:04:12] 2025-11-27 18:04:12,111 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:04:12] 2025-11-27 18:04:12,113 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:04:12]  *** Error codes and diagnostics ***
[2025-11-27 13:04:12]     "exeErrorCode": 0,
[2025-11-27 13:04:12]     "exeErrorDiag": "",
[2025-11-27 13:04:12]     "pilotErrorCode": 0,
[2025-11-27 13:04:12]     "pilotErrorDiag": "",
[2025-11-27 13:04:12]  *** Listing of results directory ***
[2025-11-27 13:04:12] total 1331204
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 21:00 queuedata.json
[2025-11-27 13:04:12] -rwx------ 1 boincer umatlas     36292 Nov 25 21:03 runpilot2-wrapper.sh
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas       100 Nov 26 17:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:04:12] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 17:42 run_atlas
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas       105 Nov 26 17:42 job.xml
[2025-11-27 13:04:12] -rw-r--r-- 2 boincer umatlas 410781549 Nov 26 17:42 EVNT.47483658._002361.pool.root.1
[2025-11-27 13:04:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 17:42 start_atlas.sh
[2025-11-27 13:04:12] drwxrwx--x 2 boincer umatlas      4096 Nov 26 17:42 shared
[2025-11-27 13:04:12] -rw-r--r-- 2 boincer umatlas    590108 Nov 26 17:42 input.tar.gz
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas         0 Nov 26 17:42 boinc_lockfile
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas      2785 Nov 26 17:42 pandaJob.out
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas        57 Nov 26 17:42 setup.sh.local
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas    991546 Nov 26 17:43 agis_schedconf.cvmfs.json
[2025-11-27 13:04:12] drwx------ 5 boincer umatlas      4096 Nov 26 17:43 pilot3
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas       533 Nov 27 12:51 boinc_task_state.xml
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas      5954 Nov 27 13:01 init_data.xml
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas 924550754 Nov 27 13:02 HITS.47556161._003434.pool.root.1
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas        95 Nov 27 13:02 pilot_heartbeat.json
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas      1068 Nov 27 13:02 memory_monitor_summary.json
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas   1516240 Nov 27 13:03 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas   2320280 Nov 27 13:03 log.47556161._003434.job.log.tgz.1
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas      8663 Nov 27 13:03 heartbeat.json
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 13:03 boinc_mmap_file
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas        29 Nov 27 13:03 wrapper_checkpoint.txt
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas      4820 Nov 27 13:04 pilotlog.txt
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas   9629055 Nov 27 13:04 log.47556161._003434.job.log.1
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas       353 Nov 27 13:04 output.list
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas       620 Nov 27 13:04 runtime_log
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas  11970560 Nov 27 13:04 result.tar.gz
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas       668 Nov 27 13:04 zysKDm53Ji8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKhMKDmAr29Wm.diag
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 13:04 runtime_log.err
[2025-11-27 13:04:12] -rw-r--r-- 1 boincer umatlas     21291 Nov 27 13:04 stderr.txt
[2025-11-27 13:04:12] HITS file was successfully produced:
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas 924550754 Nov 27 13:02 shared/HITS.pool.root.1
[2025-11-27 13:04:12]  *** Contents of shared directory: ***
[2025-11-27 13:04:12] total 1316332
[2025-11-27 13:04:12] -rw-r--r-- 2 boincer umatlas 410781549 Nov 26 17:42 ATLAS.root_0
[2025-11-27 13:04:12] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 17:42 start_atlas.sh
[2025-11-27 13:04:12] -rw-r--r-- 2 boincer umatlas    590108 Nov 26 17:42 input.tar.gz
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas 924550754 Nov 27 13:02 HITS.pool.root.1
[2025-11-27 13:04:12] -rw------- 1 boincer umatlas  11970560 Nov 27 13:04 result.tar.gz
13:04:13 (658): run_atlas exited; CPU time 535077.914463
13:04:13 (658): called boinc_finish(0)

</stderr_txt>
]]>

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