Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:21:55 (3112861): wrapper (7.7.26015): starting
18:21:55 (3112861): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 18:21:55] Arguments: --nthreads 9
[2025-11-26 18:21:55] Threads: 9
[2025-11-26 18:21:55] Checking for CVMFS
[2025-11-26 18:21:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 18:21:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 18:21:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 18:21:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 18:21:57] 2.13.2.0 6892 37368 182416 153340 3 602 30892515 40960000 19681 16776704 0 99874019 99.738 61870389 35371 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 18:21:57] CVMFS is ok
[2025-11-26 18:21:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 18:21:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 18:21:57] Further information can be found at the LHC@home message board.
[2025-11-26 18:21:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 18:21:57] Checking for apptainer binary...
[2025-11-26 18:21:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 18:21:57] Running /usr/bin/apptainer --version
[2025-11-26 18:21:57] apptainer version 1.4.4-1.el9
[2025-11-26 18:21:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 18:21:58] c-212-5.aglt2.org
[2025-11-26 18:21:58] apptainer works
[2025-11-26 18:21:58] Set ATHENA_PROC_NUMBER=9
[2025-11-26 18:21:58] Set ATHENA_CORE_NUMBER=9
[2025-11-26 18:21:58] Starting ATLAS job with PandaID=6897881043
[2025-11-26 18:21:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:08:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:08:59] 2025-11-28 00:08:23,069 | INFO     | sum of square deviations: 964993932108.7476
[2025-11-27 19:08:59] 2025-11-28 00:08:23,159 | INFO     | sum of deviations: 4551017317438.319
[2025-11-27 19:08:59] 2025-11-28 00:08:23,159 | INFO     | mean x: 1764243940.74863
[2025-11-27 19:08:59] 2025-11-28 00:08:23,159 | INFO     | mean y: 3112923.03630137
[2025-11-27 19:08:59] 2025-11-28 00:08:23,159 | INFO     | intersect: -8317255173.980727
[2025-11-27 19:08:59] 2025-11-28 00:08:23,161 | INFO     | chi2: 7.077905681883395
[2025-11-27 19:08:59] 2025-11-28 00:08:23,162 | INFO     | sum of square deviations: 955113800530.9248
[2025-11-27 19:08:59] 2025-11-28 00:08:23,225 | INFO     | sum of deviations: 5085840869501.39
[2025-11-27 19:08:59] 2025-11-28 00:08:23,226 | INFO     | mean x: 1764243788.2529209
[2025-11-27 19:08:59] 2025-11-28 00:08:23,226 | INFO     | mean y: 3121179.262542955
[2025-11-27 19:08:59] 2025-11-28 00:08:23,226 | INFO     | intersect: -9391218172.836622
[2025-11-27 19:08:59] 2025-11-28 00:08:23,227 | INFO     | chi2: 3.895808235551369
[2025-11-27 19:08:59] 2025-11-28 00:08:23,227 | INFO     | current chi2=3.895808235551369 (change=44.95817815822161 %)
[2025-11-27 19:08:59] 2025-11-28 00:08:23,255 | INFO     | sum of square deviations: 945301344640.5496
[2025-11-27 19:08:59] 2025-11-28 00:08:23,343 | INFO     | sum of deviations: 5382078830892.11
[2025-11-27 19:08:59] 2025-11-28 00:08:23,343 | INFO     | mean x: 1764243635.7572415
[2025-11-27 19:08:59] 2025-11-28 00:08:23,344 | INFO     | mean y: 3125778.6793103446
[2025-11-27 19:08:59] 2025-11-28 00:08:23,344 | INFO     | intersect: -10041605859.945158
[2025-11-27 19:08:59] 2025-11-28 00:08:23,345 | INFO     | chi2: 2.527608035816773
[2025-11-27 19:08:59] 2025-11-28 00:08:23,345 | INFO     | current chi2=2.527608035816773 (change=35.11980356859008 %)
[2025-11-27 19:08:59] 2025-11-28 00:08:23,346 | INFO     | sum of square deviations: 935556066895.6807
[2025-11-27 19:08:59] 2025-11-28 00:08:23,568 | INFO     | sum of deviations: 5389230880194.406
[2025-11-27 19:08:59] 2025-11-28 00:08:23,568 | INFO     | mean x: 1764243483.2595155
[2025-11-27 19:08:59] 2025-11-28 00:08:23,568 | INFO     | mean y: 3125888.734948097
[2025-11-27 19:08:59] 2025-11-28 00:08:23,569 | INFO     | intersect: -10159723561.552574
[2025-11-27 19:08:59] 2025-11-28 00:08:23,570 | INFO     | chi2: 2.45010534452349
[2025-11-27 19:08:59] 2025-11-28 00:08:23,570 | INFO     | current chi2=2.45010534452349 (change=3.066246435169239 %)
[2025-11-27 19:08:59] 2025-11-28 00:08:23,575 | INFO     | right removable region: 1444
[2025-11-27 19:08:59] 2025-11-28 00:08:23,577 | INFO     | sum of square deviations: 955112866133.9337
[2025-11-27 19:08:59] 2025-11-28 00:08:23,722 | INFO     | sum of deviations: 4141033843953.1157
[2025-11-27 19:08:59] 2025-11-28 00:08:23,722 | INFO     | mean x: 1764244093.2515464
[2025-11-27 19:08:59] 2025-11-28 00:08:23,722 | INFO     | mean y: 3119244.0625429554
[2025-11-27 19:08:59] 2025-11-28 00:08:23,722 | INFO     | intersect: -7646023342.322166
[2025-11-27 19:08:59] 2025-11-28 00:08:23,743 | INFO     | chi2: 4.900727016898348
[2025-11-27 19:08:59] 2025-11-28 00:08:23,743 | INFO     | current chi2=4.900727016898348 (change=30.76021019265279 %)
[2025-11-27 19:08:59] 2025-11-28 00:08:23,745 | INFO     | sum of square deviations: 945299919745.1239
[2025-11-27 19:08:59] 2025-11-28 00:08:24,023 | INFO     | sum of deviations: 4010379507900.369
[2025-11-27 19:08:59] 2025-11-28 00:08:24,023 | INFO     | mean x: 1764244245.7510345
[2025-11-27 19:08:59] 2025-11-28 00:08:24,023 | INFO     | mean y: 3121274.255862069
[2025-11-27 19:08:59] 2025-11-28 00:08:24,045 | INFO     | intersect: -7481581540.485478
[2025-11-27 19:08:59] 2025-11-28 00:08:24,046 | INFO     | chi2: 4.816190613846699
[2025-11-27 19:08:59] 2025-11-28 00:08:24,047 | INFO     | current chi2=4.816190613846699 (change=1.7249767791626895 %)
[2025-11-27 19:08:59] 2025-11-28 00:08:24,047 | INFO     | left removable region: 20
[2025-11-27 19:08:59] 2025-11-28 00:08:24,048 | INFO     | sum of square deviations: 895355469347.2482
[2025-11-27 19:08:59] 2025-11-28 00:08:24,141 | INFO     | time since job start (89130s) is within the limit (172800.0s)
[2025-11-27 19:08:59] 2025-11-28 00:08:24,173 | INFO     | sum of deviations: 4663023839400.032
[2025-11-27 19:08:59] 2025-11-28 00:08:24,173 | INFO     | mean x: 1764244062.7633426
[2025-11-27 19:08:59] 2025-11-28 00:08:24,174 | INFO     | mean y: 3137117.893258427
[2025-11-27 19:08:59] 2025-11-28 00:08:24,174 | INFO     | intersect: -9185070699.928028
[2025-11-27 19:08:59] 2025-11-28 00:08:24,175 | INFO     | chi2: 0.13137143878238103
[2025-11-27 19:08:59] 2025-11-28 00:08:24,175 | INFO     | current memory leak: 5.21 B/s (using 1424 data points, chi2=0.13)
[2025-11-27 19:08:59] 2025-11-28 00:08:24,177 | INFO     | could have reported an average CPU frequency of 2955 MHz (53 samples)
[2025-11-27 19:08:59] 2025-11-28 00:08:24,178 | INFO     | ..............................
[2025-11-27 19:08:59] 2025-11-28 00:08:24,178 | INFO     | . Timing measurements:
[2025-11-27 19:08:59] 2025-11-28 00:08:24,178 | INFO     | . get job = 0 s
[2025-11-27 19:08:59] 2025-11-28 00:08:24,178 | INFO     | . initial setup = 4 s
[2025-11-27 19:08:59] 2025-11-28 00:08:24,178 | INFO     | . payload setup = 12 s
[2025-11-27 19:08:59] 2025-11-28 00:08:24,178 | INFO     | . stage-in = 0 s
[2025-11-27 19:08:59] 2025-11-28 00:08:24,178 | INFO     | . payload execution = 89046 s
[2025-11-27 19:08:59] 2025-11-28 00:08:24,178 | INFO     | . stage-out = 5 s
[2025-11-27 19:08:59] 2025-11-28 00:08:24,178 | INFO     | . log creation = 1 s
[2025-11-27 19:08:59] 2025-11-28 00:08:24,178 | INFO     | ..............................
[2025-11-27 19:08:59] 2025-11-28 00:08:24,596 | INFO     | 
[2025-11-27 19:08:59] 2025-11-28 00:08:24,596 | INFO     | job summary report
[2025-11-27 19:08:59] 2025-11-28 00:08:24,596 | INFO     | --------------------------------------------------
[2025-11-27 19:08:59] 2025-11-28 00:08:24,596 | INFO     | PanDA job id: 6897881043
[2025-11-27 19:08:59] 2025-11-28 00:08:24,596 | INFO     | task id: 47556161
[2025-11-27 19:08:59] 2025-11-28 00:08:24,596 | INFO     | errors: (none)
[2025-11-27 19:08:59] 2025-11-28 00:08:24,596 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:08:59] 2025-11-28 00:08:24,596 | INFO     | pilot state: finished 
[2025-11-27 19:08:59] 2025-11-28 00:08:24,596 | INFO     | transexitcode: 0
[2025-11-27 19:08:59] 2025-11-28 00:08:24,596 | INFO     | exeerrorcode: 0
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | exeerrordiag: 
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | exitcode: 0
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | exitmsg: OK
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | cpuconsumptiontime: 220091 s
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | nevents: 1000
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | neventsw: 0
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | pid: 3128339
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | pgrp: 3128339
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | corecount: 9
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | event service: False
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | sizes: {0: 2284087, 1: 2284286, 12: 2284286, 13: 2284576, 23: 2284632, 89062: 2350914, 89068: 2359964, 89086: 2360028}
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | --------------------------------------------------
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | 
[2025-11-27 19:08:59] 2025-11-28 00:08:24,597 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 19:08:59] 2025-11-28 00:08:24,647 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,647 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:08:59] 2025-11-28 00:08:24,648 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,649 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:08:59] 2025-11-28 00:08:24,649 | INFO     | job 6897881043 has completed (purged errors)
[2025-11-27 19:08:59] 2025-11-28 00:08:24,672 | INFO     | overall cleanup function is called
[2025-11-27 19:08:59] 2025-11-28 00:08:25,692 | INFO     | --- collectZombieJob: --- 10, [3128339]
[2025-11-27 19:08:59] 2025-11-28 00:08:25,692 | INFO     | zombie collector waiting for pid 3128339
[2025-11-27 19:08:59] 2025-11-28 00:08:25,692 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:08:59] 2025-11-28 00:08:25,692 | INFO     | collected zombie processes
[2025-11-27 19:08:59] 2025-11-28 00:08:25,692 | INFO     | will attempt to kill all subprocesses of pid=3128339
[2025-11-27 19:08:59] 2025-11-28 00:08:26,615 | INFO     | process IDs to be killed: [3128339] (in reverse order)
[2025-11-27 19:08:59] 2025-11-28 00:08:26,829 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:08:59] 2025-11-28 00:08:26,829 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:08:59] 2025-11-28 00:08:26,925 | INFO     | did not find any defunct processes belonging to 3128339
[2025-11-27 19:08:59] 2025-11-28 00:08:27,078 | INFO     | did not find any defunct processes belonging to 3128339
[2025-11-27 19:08:59] 2025-11-28 00:08:27,084 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:08:59] 2025-11-28 00:08:27,084 | INFO     | ready for new job
[2025-11-27 19:08:59] 2025-11-28 00:08:27,084 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:08:59] 2025-11-28 00:08:27,095 | INFO     | ***************************************
[2025-11-27 19:08:59] 2025-11-28 00:08:27,095 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:08:59] 2025-11-28 00:08:27,095 | INFO     | ***************************************
[2025-11-27 19:08:59] 2025-11-28 00:08:27,095 | INFO     | 
[2025-11-27 19:08:59] 2025-11-28 00:08:27,138 | INFO     | architecture information:
[2025-11-27 19:08:59] 2025-11-28 00:08:27,148 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:08:59] 2025-11-28 00:08:27,270 | INFO     | cat /etc/os-release:
[2025-11-27 19:08:59] NAME="CentOS Linux"
[2025-11-27 19:08:59] VERSION="7 (Core)"
[2025-11-27 19:08:59] ID="centos"
[2025-11-27 19:08:59] ID_LIKE="rhel fedora"
[2025-11-27 19:08:59] VERSION_ID="7"
[2025-11-27 19:08:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:08:59] ANSI_COLOR="0;31"
[2025-11-27 19:08:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:08:59] HOME_URL="https://www.centos.org/"
[2025-11-27 19:08:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:08:59] 
[2025-11-27 19:08:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:08:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:08:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:08:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:08:59] 
[2025-11-27 19:08:59] 2025-11-28 00:08:27,270 | INFO     | ***************************************
[2025-11-27 19:08:59] 2025-11-28 00:08:27,774 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 19:08:59] 2025-11-28 00:08:27,836 | INFO     | sufficient remaining disk space (121762742272 B)
[2025-11-27 19:08:59] 2025-11-28 00:08:27,837 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:08:59] 2025-11-28 00:08:27,837 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:08:59] 2025-11-28 00:08:27,837 | INFO     | update_server=False
[2025-11-27 19:08:59] 2025-11-28 00:08:27,837 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:08:59] 2025-11-28 00:08:27,865 | INFO     | all payload control threads have been joined
[2025-11-27 19:08:59] 2025-11-28 00:08:27,870 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 19:08:59] 2025-11-28 00:08:27,870 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 19:08:59] 2025-11-28 00:08:27,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:08:59] 2025-11-28 00:08:27,870 | INFO     | will abort loop
[2025-11-27 19:08:59] 2025-11-28 00:08:27,983 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:08:59] 2025-11-28 00:08:28,569 | INFO     | all data control threads have been joined
[2025-11-27 19:08:59] 2025-11-28 00:08:28,843 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:28,872 | INFO     | [payload] control thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:28,876 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:29,084 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:29,247 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:29,303 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:08:59] 2025-11-28 00:08:29,323 | INFO     | all job control threads have been joined
[2025-11-27 19:08:59] 2025-11-28 00:08:29,330 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:08:59] 2025-11-28 00:08:29,483 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:29,483 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:29,566 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:29,575 | INFO     | [data] control thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:29,587 | INFO     | [job] validate thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:30,029 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:30,049 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:30,319 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:30,329 | INFO     | [job] control thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:30,517 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:08:59] 2025-11-28 00:08:31,337 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:34,530 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:08:59] 2025-11-28 00:08:36,419 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139758818998080)>', '<ExcThread(monitor, started 139758453888768)>']
[2025-11-27 19:08:59] 2025-11-28 00:08:41,447 | INFO     | all workflow threads have been joined
[2025-11-27 19:08:59] 2025-11-28 00:08:41,447 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:08:59] 2025-11-28 00:08:41,448 | INFO     | traces error code: 0
[2025-11-27 19:08:59] 2025-11-28 00:08:41,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:08:59] 2025-11-28 00:08:57,901 | INFO     | PID=3117064 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:08:59] 2025-11-28 00:08:57,905 | INFO     | .. there are 18 such processes running
[2025-11-27 19:08:59] 2025-11-28 00:08:57,907 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:08:59] 2025-11-28 00:08:57,907 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:08:59] 2025-11-28 00:08:57,907 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:08:59] 2025-11-28 00:08:57,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:08:59] 2025-11-28 00:08:57,907 | INFO     | [monitor] control thread has ended
[2025-11-27 19:08:59] 2025-11-28 00:08:58,255 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:08:59] 2025-11-28 00:08:58,258 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:08:59] 2025-11-28 00:08:58,260 [wrapper] pilotpid: 3117064
[2025-11-27 19:08:59] 2025-11-28 00:08:58,279 [wrapper] Pilot exit status: 0
[2025-11-27 19:08:59] 2025-11-28 00:08:58,297 [wrapper] pandaids: 6897881043
[2025-11-27 19:08:59] 2025-11-28 00:08:58,393 [wrapper] cleanup supervisor_pilot 2426496 3117065
[2025-11-27 19:08:59] 2025-11-28 00:08:58,399 [wrapper] Test setup, not cleaning
[2025-11-27 19:08:59] 2025-11-28 00:08:58,433 [wrapper] apfmon messages muted
[2025-11-27 19:08:59] 2025-11-28 00:08:58,475 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:08:59] 2025-11-28 00:08:58,516 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:08:59]  *** Error codes and diagnostics ***
[2025-11-27 19:08:59]     "exeErrorCode": 0,
[2025-11-27 19:08:59]     "exeErrorDiag": "",
[2025-11-27 19:08:59]     "pilotErrorCode": 0,
[2025-11-27 19:08:59]     "pilotErrorDiag": "",
[2025-11-27 19:08:59]  *** Listing of results directory ***
[2025-11-27 19:08:59] total 1338768
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 20:46 queuedata.json
[2025-11-27 19:08:59] -rwx------. 1 boincer umatlas     36292 Nov 25 20:49 runpilot2-wrapper.sh
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas       100 Nov 26 18:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:08:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 18:21 run_atlas
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas       105 Nov 26 18:21 job.xml
[2025-11-27 19:08:59] -rw-r--r--. 2 boincer umatlas 409350121 Nov 26 18:21 EVNT.47483658._002359.pool.root.1
[2025-11-27 19:08:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:21 start_atlas.sh
[2025-11-27 19:08:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 18:21 shared
[2025-11-27 19:08:59] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 18:21 input.tar.gz
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas         0 Nov 26 18:21 boinc_lockfile
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 18:21 pandaJob.out
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas        57 Nov 26 18:21 setup.sh.local
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas    991538 Nov 26 18:22 agis_schedconf.cvmfs.json
[2025-11-27 19:08:59] drwx------. 5 boincer umatlas      4096 Nov 26 18:22 pilot3
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:55 boinc_task_state.xml
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 19:02 init_data.xml
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas 928935119 Nov 27 19:07 HITS.47556161._003411.pool.root.1
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas      1069 Nov 27 19:07 memory_monitor_summary.json
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:08 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas   2602095 Nov 27 19:08 log.47556161._003411.job.log.tgz.1
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas      8610 Nov 27 19:08 heartbeat.json
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:08 boinc_mmap_file
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:08 wrapper_checkpoint.txt
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas       823 Nov 27 19:08 pilotlog.txt
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas        95 Nov 27 19:08 pilot_heartbeat.json
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas  11744699 Nov 27 19:08 log.47556161._003411.job.log.1
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas       353 Nov 27 19:08 output.list
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:08 runtime_log
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas  14366720 Nov 27 19:08 result.tar.gz
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 19:08 runtime_log.err
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas       664 Nov 27 19:08 ojeKDmDqJi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKlJKDm3Bi2Xn.diag
[2025-11-27 19:08:59] -rw-r--r--. 1 boincer umatlas     21173 Nov 27 19:08 stderr.txt
[2025-11-27 19:08:59] HITS file was successfully produced:
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas 928935119 Nov 27 19:07 shared/HITS.pool.root.1
[2025-11-27 19:08:59]  *** Contents of shared directory: ***
[2025-11-27 19:08:59] total 1321556
[2025-11-27 19:08:59] -rw-r--r--. 2 boincer umatlas 409350121 Nov 26 18:21 ATLAS.root_0
[2025-11-27 19:08:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 18:21 start_atlas.sh
[2025-11-27 19:08:59] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 18:21 input.tar.gz
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas 928935119 Nov 27 19:07 HITS.pool.root.1
[2025-11-27 19:08:59] -rw-------. 1 boincer umatlas  14366720 Nov 27 19:08 result.tar.gz
19:09:00 (3112861): run_atlas exited; CPU time 221469.810940
19:09:00 (3112861): called boinc_finish(0)

</stderr_txt>
]]>

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