Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:35:03 (1246592): wrapper (7.7.26015): starting
23:35:03 (1246592): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 23:35:03] Arguments: --nthreads 3
[2025-11-26 23:35:03] Threads: 3
[2025-11-26 23:35:03] Checking for CVMFS
[2025-11-26 23:35:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:35:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:35:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:35:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:35:04] 2.9.2.0 1204567 8 49988 153337 3 88 35765717 36864000 0 130560 0 125237 99.992 119 5409 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 23:35:04] CVMFS is ok
[2025-11-26 23:35:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:35:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:35:04] Further information can be found at the LHC@home message board.
[2025-11-26 23:35:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:35:04] Checking for apptainer binary...
[2025-11-26 23:35:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:35:04] Running /usr/bin/apptainer --version
[2025-11-26 23:35:04] apptainer version 1.4.1-1.1
[2025-11-26 23:35:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:35:04] thA335
[2025-11-26 23:35:04] apptainer works
[2025-11-26 23:35:04] Set ATHENA_PROC_NUMBER=3
[2025-11-26 23:35:04] Set ATHENA_CORE_NUMBER=3
[2025-11-26 23:35:04] Starting ATLAS job with PandaID=6897880997
[2025-11-26 23:35:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:39:23]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:39:23] 2025-11-26 22:38:31,712 | INFO     | update_server=False
[2025-11-26 23:39:23] 2025-11-26 22:38:31,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:39:23] 2025-11-26 22:38:31,713 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:39:23] 2025-11-26 22:38:31,925 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:39:23] 2025-11-26 22:38:32,010 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 23:39:23] 2025-11-26 22:38:32,010 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 23:39:23] 2025-11-26 22:38:32,011 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:39:23] 2025-11-26 22:38:32,011 | INFO     | will abort loop
[2025-11-26 23:39:23] 2025-11-26 22:38:32,153 | INFO     | all data control threads have been joined
[2025-11-26 23:39:23] 2025-11-26 22:38:32,451 | INFO     | all payload control threads have been joined
[2025-11-26 23:39:23] 2025-11-26 22:38:32,718 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:32,719 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:32,830 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:33,017 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:33,055 | INFO     | all job control threads have been joined
[2025-11-26 23:39:23] 2025-11-26 22:38:33,094 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:33,159 | INFO     | [data] control thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:33,319 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:33,333 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:33,453 | INFO     | [job] validate thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:33,456 | INFO     | [payload] control thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:33,528 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:33,584 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:33,815 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:33,931 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:34,061 | INFO     | [job] control thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:38:34,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:39:23] 2025-11-26 22:38:38,156 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:39:23] 2025-11-26 22:39:01,601 | INFO     | PID=1250336 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:39:23] 2025-11-26 22:39:01,601 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:39:23] 2025-11-26 22:39:01,601 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:39:23] 2025-11-26 22:39:01,601 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:39:23] 2025-11-26 22:39:16,728 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:39:23] 2025-11-26 22:39:18,028 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139953471153984)>', '<ExcThread(monitor, started 139952809551616)>']
[2025-11-26 23:39:23] 2025-11-26 22:39:18,687 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:39:23] 2025-11-26 22:39:18,687 | INFO     | [monitor] control thread has ended
[2025-11-26 23:39:23] 2025-11-26 22:39:23,036 | INFO     | all workflow threads have been joined
[2025-11-26 23:39:23] 2025-11-26 22:39:23,036 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:39:23] 2025-11-26 22:39:23,037 | INFO     | traces error code: 0
[2025-11-26 23:39:23] 2025-11-26 22:39:23,037 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:39:23] 2025-11-26 22:39:23,083 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:39:23] 2025-11-26 22:39:23,086 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:39:23] 2025-11-26 22:39:23,089 [wrapper] pilotpid: 1250336
[2025-11-26 23:39:23] 2025-11-26 22:39:23,092 [wrapper] Pilot exit status: 0
[2025-11-26 23:39:23] 2025-11-26 22:39:23,098 [wrapper] pandaids: 6897880997
[2025-11-26 23:39:23] 2025-11-26 22:39:23,114 [wrapper] cleanup supervisor_pilot 1250342 1250337
[2025-11-26 23:39:23] 2025-11-26 22:39:23,116 [wrapper] Test setup, not cleaning
[2025-11-26 23:39:23] 2025-11-26 22:39:23,119 [wrapper] apfmon messages muted
[2025-11-26 23:39:23] 2025-11-26 22:39:23,121 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:39:23] 2025-11-26 22:39:23,124 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:39:23]  *** Error codes and diagnostics ***
[2025-11-26 23:39:23]     "exeErrorCode": 65,
[2025-11-26 23:39:23]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 23:39:23]     "pilotErrorCode": 1305,
[2025-11-26 23:39:23]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 23:39:23]  *** Listing of results directory ***
[2025-11-26 23:39:23] total 403264
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc    576529 Nov 26 02:44 pilot3.tar.gz
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc      5112 Nov 26 02:46 queuedata.json
[2025-11-26 23:39:23] -rwx------ 1 boinc boinc     36292 Nov 26 02:49 runpilot2-wrapper.sh
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc       100 Nov 26 23:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:39:23] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 23:35 run_atlas
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc       105 Nov 26 23:35 job.xml
[2025-11-26 23:39:23] -rw-r--r-- 2 boinc boinc 408757829 Nov 26 23:35 EVNT.47483658._002356.pool.root.1
[2025-11-26 23:39:23] -rw-r--r-- 2 boinc boinc    590108 Nov 26 23:35 input.tar.gz
[2025-11-26 23:39:23] -rw-r--r-- 2 boinc boinc     15847 Nov 26 23:35 start_atlas.sh
[2025-11-26 23:39:23] drwxrwx--x 2 boinc boinc      4096 Nov 26 23:35 shared
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc         0 Nov 26 23:35 boinc_setup_complete
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc      6196 Nov 26 23:35 init_data.xml
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc         0 Nov 26 23:35 boinc_lockfile
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc      2782 Nov 26 23:35 pandaJob.out
[2025-11-26 23:39:23] -rw------- 1 boinc boinc    991546 Nov 26 23:35 agis_schedconf.cvmfs.json
[2025-11-26 23:39:23] -rw------- 1 boinc boinc   1516240 Nov 26 23:35 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:39:23] drwx------ 5 boinc boinc      4096 Nov 26 23:35 pilot3
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc       523 Nov 26 23:36 boinc_task_state.xml
[2025-11-26 23:39:23] -rw------- 1 boinc boinc       948 Nov 26 23:36 memory_monitor_summary.json
[2025-11-26 23:39:23] -rw------- 1 boinc boinc     55682 Nov 26 23:36 log.47556161._003381.job.log.tgz.1
[2025-11-26 23:39:23] -rw------- 1 boinc boinc        95 Nov 26 23:38 pilot_heartbeat.json
[2025-11-26 23:39:23] -rw------- 1 boinc boinc      8398 Nov 26 23:38 heartbeat.json
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc      8192 Nov 26 23:39 boinc_mmap_file
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc        23 Nov 26 23:39 wrapper_checkpoint.txt
[2025-11-26 23:39:23] -rw------- 1 boinc boinc      4938 Nov 26 23:39 pilotlog.txt
[2025-11-26 23:39:23] -rw------- 1 boinc boinc     93641 Nov 26 23:39 log.47556161._003381.job.log.1
[2025-11-26 23:39:23] -rw------- 1 boinc boinc       186 Nov 26 23:39 output.list
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc       620 Nov 26 23:39 runtime_log
[2025-11-26 23:39:23] -rw------- 1 boinc boinc    163840 Nov 26 23:39 result.tar.gz
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc      8744 Nov 26 23:39 runtime_log.err
[2025-11-26 23:39:23] -rw------- 1 boinc boinc       649 Nov 26 23:39 o3SKDmDqJi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFlJKDmuHBS8n.diag
[2025-11-26 23:39:23] -rw-r--r-- 1 boinc boinc      8014 Nov 26 23:39 stderr.txt
[2025-11-26 23:39:23] No HITS result produced
[2025-11-26 23:39:23]  *** Contents of shared directory: ***
[2025-11-26 23:39:23] total 399940
[2025-11-26 23:39:23] -rw-r--r-- 2 boinc boinc 408757829 Nov 26 23:35 ATLAS.root_0
[2025-11-26 23:39:23] -rw-r--r-- 2 boinc boinc    590108 Nov 26 23:35 input.tar.gz
[2025-11-26 23:39:23] -rw-r--r-- 2 boinc boinc     15847 Nov 26 23:35 start_atlas.sh
[2025-11-26 23:39:23] -rw------- 1 boinc boinc    163840 Nov 26 23:39 result.tar.gz
23:39:24 (1246592): run_atlas exited; CPU time 32.306060
23:39:24 (1246592): called boinc_finish(0)

</stderr_txt>
]]>

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