Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:54:17 (2822616): wrapper (7.7.26015): starting
17:54:17 (2822616): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:54:17] Arguments: --nthreads 8
[2025-11-26 17:54:17] Threads: 8
[2025-11-26 17:54:17] Checking for CVMFS
[2025-11-26 17:54:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:54:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:54:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:54:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:54:40] 2.13.3.0 17216 30541 479024 153337 3 1106 30936368 32934624 73920 16776704 0 541489632 99.678 428182915 47959 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 17:54:40] CVMFS is ok
[2025-11-26 17:54:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:54:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:54:40] Further information can be found at the LHC@home message board.
[2025-11-26 17:54:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:54:40] Checking for apptainer binary...
[2025-11-26 17:54:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:54:40] Running /usr/bin/apptainer --version
[2025-11-26 17:54:40] apptainer version 1.4.4-1.el9
[2025-11-26 17:54:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:54:40] c7-9-14.aglt2.org
[2025-11-26 17:54:40] apptainer works
[2025-11-26 17:54:41] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:54:41] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:54:41] Starting ATLAS job with PandaID=6891595466
[2025-11-26 17:54:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 04:18:59]  *** The last 200 lines of the pilot log: ***
[2025-11-27 04:18:59] 2025-11-27 09:18:12,131 | INFO     | time since job start (37301s) is within the limit (172800.0s)
[2025-11-27 04:18:59] 2025-11-27 09:18:13,103 | INFO     | monitor loop #2142: job 0:6891595466 is in state 'finished'
[2025-11-27 04:18:59] 2025-11-27 09:18:13,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 04:18:59] 2025-11-27 09:18:14,141 | INFO     | time since job start (37303s) is within the limit (172800.0s)
[2025-11-27 04:18:59] 2025-11-27 09:18:15,620 | INFO     | monitor loop #2143: job 0:6891595466 is in state 'finished'
[2025-11-27 04:18:59] 2025-11-27 09:18:15,620 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 04:18:59] 2025-11-27 09:18:16,154 | INFO     | time since job start (37305s) is within the limit (172800.0s)
[2025-11-27 04:18:59] 2025-11-27 09:18:18,126 | INFO     | monitor loop #2144: job 0:6891595466 is in state 'finished'
[2025-11-27 04:18:59] 2025-11-27 09:18:18,130 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 04:18:59] 2025-11-27 09:18:18,161 | INFO     | time since job start (37307s) is within the limit (172800.0s)
[2025-11-27 04:18:59] 2025-11-27 09:18:20,171 | INFO     | time since job start (37309s) is within the limit (172800.0s)
[2025-11-27 04:18:59] 2025-11-27 09:18:20,635 | INFO     | monitor loop #2145: job 0:6891595466 is in state 'finished'
[2025-11-27 04:18:59] 2025-11-27 09:18:20,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 04:18:59] 2025-11-27 09:18:23,069 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 04:18:59] 2025-11-27 09:18:23,121 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.2795703125016
[2025-11-27 04:18:59] 2025-11-27 09:18:23,158 | INFO     | monitor loop #2146: job 0:6891595466 is in state 'finished'
[2025-11-27 04:18:59] 2025-11-27 09:18:23,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 04:18:59] 2025-11-27 09:18:23,209 | INFO     | using path: /tmp/boinchome/slots/12/PanDA_Pilot-6891595466/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 04:18:59] 2025-11-27 09:18:23,209 | INFO     | extracted standard info from prmon json
[2025-11-27 04:18:59] 2025-11-27 09:18:23,209 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 04:18:59] 2025-11-27 09:18:23,209 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 04:18:59] 2025-11-27 09:18:23,291 | INFO     | fitting pss+swap vs Time
[2025-11-27 04:18:59] 2025-11-27 09:18:23,292 | INFO     | sum of square deviations: 70037722849.49109
[2025-11-27 04:18:59] 2025-11-27 09:18:23,314 | INFO     | sum of deviations: 220260745959.90826
[2025-11-27 04:18:59] 2025-11-27 09:18:23,315 | INFO     | mean x: 1764216488.8456485
[2025-11-27 04:18:59] 2025-11-27 09:18:23,315 | INFO     | mean y: 2752188.4564860426
[2025-11-27 04:18:59] 2025-11-27 09:18:23,315 | INFO     | intersect: -5545509863.166404
[2025-11-27 04:18:59] 2025-11-27 09:18:23,315 | INFO     | chi2: 31.321249070705914
[2025-11-27 04:18:59] 2025-11-27 09:18:23,315 | INFO     | sum of square deviations: 68326945515.88572
[2025-11-27 04:18:59] 2025-11-27 09:18:23,352 | INFO     | sum of deviations: 408384302914.15796
[2025-11-27 04:18:59] 2025-11-27 09:18:23,398 | INFO     | mean x: 1764216336.352649
[2025-11-27 04:18:59] 2025-11-27 09:18:23,398 | INFO     | mean y: 2768951.55794702
[2025-11-27 04:18:59] 2025-11-27 09:18:23,398 | INFO     | intersect: -10541801031.358063
[2025-11-27 04:18:59] 2025-11-27 09:18:23,399 | INFO     | chi2: 27.951575667858954
[2025-11-27 04:18:59] 2025-11-27 09:18:23,399 | INFO     | current chi2=27.951575667858954 (change=10.758425997763105 %)
[2025-11-27 04:18:59] 2025-11-27 09:18:23,399 | INFO     | right removable region: 603
[2025-11-27 04:18:59] 2025-11-27 09:18:23,399 | INFO     | sum of square deviations: 68326631365.885765
[2025-11-27 04:18:59] 2025-11-27 09:18:23,424 | INFO     | sum of deviations: -30517306238.22017
[2025-11-27 04:18:59] 2025-11-27 09:18:23,424 | INFO     | mean x: 1764216641.352649
[2025-11-27 04:18:59] 2025-11-27 09:18:23,424 | INFO     | mean y: 2774538.418874172
[2025-11-27 04:18:59] 2025-11-27 09:18:23,424 | INFO     | intersect: 790741666.8788896
[2025-11-27 04:18:59] 2025-11-27 09:18:23,424 | INFO     | chi2: 26.440378724099883
[2025-11-27 04:18:59] 2025-11-27 09:18:23,424 | INFO     | current chi2=26.440378724099883 (change=15.583255749436262 %)
[2025-11-27 04:18:59] 2025-11-27 09:18:23,424 | INFO     | left removable region: 10
[2025-11-27 04:18:59] 2025-11-27 09:18:23,425 | INFO     | sum of square deviations: 64661168929.740105
[2025-11-27 04:18:59] 2025-11-27 09:18:23,467 | INFO     | sum of deviations: -8390680185.708832
[2025-11-27 04:18:59] 2025-11-27 09:18:23,467 | INFO     | mean x: 1764216610.8684654
[2025-11-27 04:18:59] 2025-11-27 09:18:23,467 | INFO     | mean y: 2814664.913996627
[2025-11-27 04:18:59] 2025-11-27 09:18:23,467 | INFO     | intersect: 231746148.91171286
[2025-11-27 04:18:59] 2025-11-27 09:18:23,468 | INFO     | chi2: 18.9374864143711
[2025-11-27 04:18:59] 2025-11-27 09:18:23,468 | INFO     | current memory leak: -0.13 B/s (using 593 data points, chi2=18.94)
[2025-11-27 04:18:59] 2025-11-27 09:18:23,468 | INFO     | could have reported an average CPU frequency of 3799 MHz (24 samples)
[2025-11-27 04:18:59] 2025-11-27 09:18:23,469 | INFO     | ..............................
[2025-11-27 04:18:59] 2025-11-27 09:18:23,469 | INFO     | . Timing measurements:
[2025-11-27 04:18:59] 2025-11-27 09:18:23,469 | INFO     | . get job = 0 s
[2025-11-27 04:18:59] 2025-11-27 09:18:23,469 | INFO     | . initial setup = 3 s
[2025-11-27 04:18:59] 2025-11-27 09:18:23,469 | INFO     | . payload setup = 45 s
[2025-11-27 04:18:59] 2025-11-27 09:18:23,469 | INFO     | . stage-in = 0 s
[2025-11-27 04:18:59] 2025-11-27 09:18:23,469 | INFO     | . payload execution = 37127 s
[2025-11-27 04:18:59] 2025-11-27 09:18:23,469 | INFO     | . stage-out = 11 s
[2025-11-27 04:18:59] 2025-11-27 09:18:23,469 | INFO     | . log creation = 1 s
[2025-11-27 04:18:59] 2025-11-27 09:18:23,469 | INFO     | ..............................
[2025-11-27 04:18:59] 2025-11-27 09:18:23,839 | INFO     | 
[2025-11-27 04:18:59] 2025-11-27 09:18:23,839 | INFO     | job summary report
[2025-11-27 04:18:59] 2025-11-27 09:18:23,839 | INFO     | --------------------------------------------------
[2025-11-27 04:18:59] 2025-11-27 09:18:23,839 | INFO     | PanDA job id: 6891595466
[2025-11-27 04:18:59] 2025-11-27 09:18:23,839 | INFO     | task id: 47493068
[2025-11-27 04:18:59] 2025-11-27 09:18:23,839 | INFO     | errors: (none)
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | pilot state: finished 
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | transexitcode: 0
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | exeerrorcode: 0
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | exeerrordiag: 
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | exitcode: 0
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | exitmsg: OK
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | cpuconsumptiontime: 138673 s
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | nevents: 1000
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | neventsw: 0
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | pid: 2872498
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | pgrp: 2872498
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | corecount: 8
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | event service: False
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | sizes: {0: 2284305, 11: 2284305, 22: 2284333, 33: 2284361, 43: 2284707, 37177: 2326175, 37188: 2335171, 37189: 2335227, 37238: 2335473}
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | --------------------------------------------------
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | 
[2025-11-27 04:18:59] 2025-11-27 09:18:23,840 | INFO     | executing command: ls -lF /tmp/boinchome/slots/12
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,222 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 04:18:59] 2025-11-27 09:18:24,223 | INFO     | job 6891595466 has completed (purged errors)
[2025-11-27 04:18:59] 2025-11-27 09:18:24,223 | INFO     | overall cleanup function is called
[2025-11-27 04:18:59] 2025-11-27 09:18:24,223 | INFO     | PID=2847474 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 04:18:59] 2025-11-27 09:18:24,223 | INFO     | .. there are 110 such processes running
[2025-11-27 04:18:59] 2025-11-27 09:18:25,268 | INFO     | --- collectZombieJob: --- 10, [2872498]
[2025-11-27 04:18:59] 2025-11-27 09:18:25,268 | INFO     | zombie collector waiting for pid 2872498
[2025-11-27 04:18:59] 2025-11-27 09:18:25,268 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 04:18:59] 2025-11-27 09:18:25,268 | INFO     | collected zombie processes
[2025-11-27 04:18:59] 2025-11-27 09:18:25,268 | INFO     | will attempt to kill all subprocesses of pid=2872498
[2025-11-27 04:18:59] 2025-11-27 09:18:27,826 | INFO     | process IDs to be killed: [2872498] (in reverse order)
[2025-11-27 04:18:59] 2025-11-27 09:18:28,256 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 04:18:59] 2025-11-27 09:18:28,257 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 04:18:59] 2025-11-27 09:18:28,350 | INFO     | did not find any defunct processes belonging to 2872498
[2025-11-27 04:18:59] 2025-11-27 09:18:28,444 | INFO     | did not find any defunct processes belonging to 2872498
[2025-11-27 04:18:59] 2025-11-27 09:18:28,454 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 04:18:59] 2025-11-27 09:18:28,454 | INFO     | ready for new job
[2025-11-27 04:18:59] 2025-11-27 09:18:28,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 04:18:59] 2025-11-27 09:18:28,458 | INFO     | ***************************************
[2025-11-27 04:18:59] 2025-11-27 09:18:28,458 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 04:18:59] 2025-11-27 09:18:28,458 | INFO     | ***************************************
[2025-11-27 04:18:59] 2025-11-27 09:18:28,458 | INFO     | 
[2025-11-27 04:18:59] 2025-11-27 09:18:28,479 | INFO     | architecture information:
[2025-11-27 04:18:59] 2025-11-27 09:18:28,487 | INFO     | executing command: cat /etc/os-release
[2025-11-27 04:18:59] 2025-11-27 09:18:28,572 | INFO     | cat /etc/os-release:
[2025-11-27 04:18:59] NAME="CentOS Linux"
[2025-11-27 04:18:59] VERSION="7 (Core)"
[2025-11-27 04:18:59] ID="centos"
[2025-11-27 04:18:59] ID_LIKE="rhel fedora"
[2025-11-27 04:18:59] VERSION_ID="7"
[2025-11-27 04:18:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 04:18:59] ANSI_COLOR="0;31"
[2025-11-27 04:18:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 04:18:59] HOME_URL="https://www.centos.org/"
[2025-11-27 04:18:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 04:18:59] 
[2025-11-27 04:18:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 04:18:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 04:18:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 04:18:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 04:18:59] 
[2025-11-27 04:18:59] 2025-11-27 09:18:28,572 | INFO     | ***************************************
[2025-11-27 04:18:59] 2025-11-27 09:18:29,075 | INFO     | executing command: df -mP /tmp/boinchome/slots/12
[2025-11-27 04:18:59] 2025-11-27 09:18:29,261 | INFO     | sufficient remaining disk space (58902708224 B)
[2025-11-27 04:18:59] 2025-11-27 09:18:29,261 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 04:18:59] 2025-11-27 09:18:29,261 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 04:18:59] 2025-11-27 09:18:29,261 | INFO     | update_server=False
[2025-11-27 04:18:59] 2025-11-27 09:18:29,261 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 04:18:59] 2025-11-27 09:18:29,262 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:18:59] 2025-11-27 09:18:29,263 | INFO     | aborting loop
[2025-11-27 04:18:59] 2025-11-27 09:18:29,263 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:18:59] 2025-11-27 09:18:29,867 | INFO     | all job control threads have been joined
[2025-11-27 04:18:59] 2025-11-27 09:18:29,979 | INFO     | all payload control threads have been joined
[2025-11-27 04:18:59] 2025-11-27 09:18:30,033 | INFO     | all data control threads have been joined
[2025-11-27 04:18:59] 2025-11-27 09:18:30,264 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 04:18:59] 2025-11-27 09:18:30,267 | INFO     | [job] retrieve thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:30,268 | INFO     | [job] job monitor thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:30,269 | INFO     | [job] queue monitor thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:30,302 | INFO     | [data] copytool_in thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:30,377 | INFO     | [payload] validate_post thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:30,462 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:30,463 | INFO     | [job] validate thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:30,477 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 04:18:59] 2025-11-27 09:18:30,501 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:30,873 | INFO     | [job] control thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:30,985 | INFO     | [payload] control thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:31,039 | INFO     | [data] control thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:31,258 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:31,299 | INFO     | [payload] failed_post thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:31,368 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:32,283 | INFO     | [data] copytool_out thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:34,511 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 04:18:59] 2025-11-27 09:18:37,748 | INFO     | [monitor] cgroup control has ended
[2025-11-27 04:18:59] 2025-11-27 09:18:38,707 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635476092736)>', '<ExcThread(monitor, started 139635124582144)>']
[2025-11-27 04:18:59] 2025-11-27 09:18:43,733 | INFO     | all workflow threads have been joined
[2025-11-27 04:18:59] 2025-11-27 09:18:43,733 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 04:18:59] 2025-11-27 09:18:43,734 | INFO     | traces error code: 0
[2025-11-27 04:18:59] 2025-11-27 09:18:43,734 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 04:18:59] 2025-11-27 09:18:57,895 | INFO     | PID=2847474 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 04:18:59] 2025-11-27 09:18:57,895 | INFO     | .. there are 110 such processes running
[2025-11-27 04:18:59] 2025-11-27 09:18:57,896 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 04:18:59] 2025-11-27 09:18:57,896 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 04:18:59] 2025-11-27 09:18:57,896 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 04:18:59] 2025-11-27 09:18:57,896 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 04:18:59] 2025-11-27 09:18:57,896 | INFO     | [monitor] control thread has ended
[2025-11-27 04:18:59] 2025-11-27 09:18:58,228 [wrapper] ==== pilot stdout END ====
[2025-11-27 04:18:59] 2025-11-27 09:18:58,257 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 04:18:59] 2025-11-27 09:18:58,319 [wrapper] pilotpid: 2847474
[2025-11-27 04:18:59] 2025-11-27 09:18:58,375 [wrapper] Pilot exit status: 0
[2025-11-27 04:18:59] 2025-11-27 09:18:58,477 [wrapper] pandaids: 6891595466
[2025-11-27 04:18:59] 2025-11-27 09:18:58,977 [wrapper] cleanup supervisor_pilot 1456762 2847475
[2025-11-27 04:18:59] 2025-11-27 09:18:59,011 [wrapper] Test setup, not cleaning
[2025-11-27 04:18:59] 2025-11-27 09:18:59,041 [wrapper] apfmon messages muted
[2025-11-27 04:18:59] 2025-11-27 09:18:59,067 [wrapper] ==== wrapper stdout END ====
[2025-11-27 04:18:59] 2025-11-27 09:18:59,091 [wrapper] ==== wrapper stderr END ====
[2025-11-27 04:18:59]  *** Error codes and diagnostics ***
[2025-11-27 04:18:59]     "exeErrorCode": 0,
[2025-11-27 04:18:59]     "exeErrorDiag": "",
[2025-11-27 04:18:59]     "pilotErrorCode": 0,
[2025-11-27 04:18:59]     "pilotErrorDiag": "",
[2025-11-27 04:18:59]  *** Listing of results directory ***
[2025-11-27 04:18:59] total 1335632
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:36 pilot3.tar.gz
[2025-11-27 04:18:59] -rwx------. 1 boincer umatlas     36292 Nov 18 13:45 runpilot2-wrapper.sh
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 13:45 queuedata.json
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas       100 Nov 26 17:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 04:18:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 17:54 run_atlas
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas       105 Nov 26 17:54 job.xml
[2025-11-27 04:18:59] -rw-r--r--. 2 boincer umatlas 412219700 Nov 26 17:54 EVNT.47493065._000770.pool.root.1
[2025-11-27 04:18:59] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 17:54 start_atlas.sh
[2025-11-27 04:18:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 17:54 shared
[2025-11-27 04:18:59] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 17:54 input.tar.gz
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas         0 Nov 26 17:54 boinc_lockfile
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 17:54 pandaJob.out
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas    991546 Nov 26 17:56 agis_schedconf.cvmfs.json
[2025-11-27 04:18:59] drwx------. 5 boincer umatlas      4096 Nov 26 17:56 pilot3
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas       533 Nov 27 03:51 boinc_task_state.xml
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas      7173 Nov 27 04:13 init_data.xml
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas 938690995 Nov 27 04:16 HITS.47493068._006350.pool.root.1
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas      1053 Nov 27 04:17 memory_monitor_summary.json
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas   1516240 Nov 27 04:17 agis_ddmendpoints.agis.ALL.json
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas   1825045 Nov 27 04:17 log.47493068._006350.job.log.tgz.1
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas      8593 Nov 27 04:18 heartbeat.json
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas        29 Nov 27 04:18 wrapper_checkpoint.txt
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas        95 Nov 27 04:18 pilot_heartbeat.json
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas       824 Nov 27 04:18 pilotlog.txt
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas   4613473 Nov 27 04:18 log.47493068._006350.job.log.1
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas       353 Nov 27 04:18 output.list
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas       620 Nov 27 04:18 runtime_log
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas   6461440 Nov 27 04:18 result.tar.gz
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas      8713 Nov 27 04:18 runtime_log.err
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas       659 Nov 27 04:18 MJxNDm3sff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3JGKDmhr5GJm.diag
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 04:18 boinc_mmap_file
[2025-11-27 04:18:59] -rw-r--r--. 1 boincer umatlas      2145 Nov 27 04:18 stderr.txt
[2025-11-27 04:18:59] HITS file was successfully produced:
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas 938690995 Nov 27 04:16 shared/HITS.pool.root.1
[2025-11-27 04:18:59]  *** Contents of shared directory: ***
[2025-11-27 04:18:59] total 1326168
[2025-11-27 04:18:59] -rw-r--r--. 2 boincer umatlas 412219700 Nov 26 17:54 ATLAS.root_0
[2025-11-27 04:18:59] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 17:54 start_atlas.sh
[2025-11-27 04:18:59] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 17:54 input.tar.gz
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas 938690995 Nov 27 04:16 HITS.pool.root.1
[2025-11-27 04:18:59] -rw-------. 1 boincer umatlas   6461440 Nov 27 04:18 result.tar.gz
04:19:01 (2822616): run_atlas exited; CPU time 139565.855277
04:19:01 (2822616): called boinc_finish(0)

</stderr_txt>
]]>

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