Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
19:34:51 (2865860): wrapper (7.7.26015): starting
19:34:51 (2865860): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 19:34:51] Arguments: --nthreads 8
[2025-11-26 19:34:51] Threads: 8
[2025-11-26 19:34:51] Checking for CVMFS
[2025-11-26 19:34:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:34:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:34:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:34:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:34:51] 2.13.2.0 3460 3272 59584 153343 0 89 3242125 4096000 3884 130560 0 7790596 99.788 1352724 892 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-26 19:34:51] CVMFS is ok
[2025-11-26 19:34:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:34:51] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-26 19:34:51] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-26 19:34:51] Further information can be found at the LHC@home message board.
[2025-11-26 19:34:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:34:51] Checking for apptainer binary...
[2025-11-26 19:34:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:34:51] Running /usr/bin/apptainer --version
[2025-11-26 19:34:51] apptainer version 1.4.3
[2025-11-26 19:34:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:34:51] painter
[2025-11-26 19:34:51] apptainer works
[2025-11-26 19:34:51] Set ATHENA_PROC_NUMBER=8
[2025-11-26 19:34:51] Set ATHENA_CORE_NUMBER=8
[2025-11-26 19:34:51] Starting ATLAS job with PandaID=6895618328
[2025-11-26 19:34:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:47:43]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:47:43] 2025-11-27 06:47:09,591 | INFO     | executing command: lscpu
[2025-11-26 23:47:43] 2025-11-27 06:47:09,610 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 23:47:43] 2025-11-27 06:47:10,398 | INFO     | time since job start (15128s) is within the limit (172800.0s)
[2025-11-26 23:47:43] 2025-11-27 06:47:11,460 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 23:47:43] 2025-11-27 06:47:11,462 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4517.75115625
[2025-11-26 23:47:43] 2025-11-27 06:47:11,465 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6895618328/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:47:43] 2025-11-27 06:47:11,466 | INFO     | extracted standard info from prmon json
[2025-11-26 23:47:43] 2025-11-27 06:47:11,466 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:47:43] 2025-11-27 06:47:11,466 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:47:43] 2025-11-27 06:47:11,468 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:47:43] 2025-11-27 06:47:11,468 | INFO     | sum of square deviations: 4729524912.544331
[2025-11-26 23:47:43] 2025-11-27 06:47:11,468 | INFO     | sum of deviations: 91393013103.54442
[2025-11-26 23:47:43] 2025-11-27 06:47:11,469 | INFO     | mean x: 1764218454.576613
[2025-11-26 23:47:43] 2025-11-27 06:47:11,469 | INFO     | mean y: 2843088.5766129033
[2025-11-26 23:47:43] 2025-11-27 06:47:11,469 | INFO     | intersect: -34088792608.061436
[2025-11-26 23:47:43] 2025-11-27 06:47:11,469 | INFO     | chi2: 4.113001703807765
[2025-11-26 23:47:43] 2025-11-27 06:47:11,469 | INFO     | sum of square deviations: 4449190567.514394
[2025-11-26 23:47:43] 2025-11-27 06:47:11,470 | INFO     | sum of deviations: 147072793607.2553
[2025-11-26 23:47:43] 2025-11-27 06:47:11,470 | INFO     | mean x: 1764218302.0781894
[2025-11-26 23:47:43] 2025-11-27 06:47:11,470 | INFO     | mean y: 2873198.670781893
[2025-11-26 23:47:43] 2025-11-27 06:47:11,470 | INFO     | intersect: -58315265861.09169
[2025-11-26 23:47:43] 2025-11-27 06:47:11,470 | INFO     | chi2: 2.0285940867492362
[2025-11-26 23:47:43] 2025-11-27 06:47:11,470 | INFO     | current chi2=2.0285940867492362 (change=50.67850118148043 %)
[2025-11-26 23:47:43] 2025-11-27 06:47:11,470 | INFO     | sum of square deviations: 4180158759.983203
[2025-11-26 23:47:43] 2025-11-27 06:47:11,471 | INFO     | sum of deviations: 141579610075.5042
[2025-11-26 23:47:43] 2025-11-27 06:47:11,471 | INFO     | mean x: 1764218149.5798318
[2025-11-26 23:47:43] 2025-11-27 06:47:11,471 | INFO     | mean y: 2870084.6050420166
[2025-11-26 23:47:43] 2025-11-27 06:47:11,471 | INFO     | intersect: -59750199606.614975
[2025-11-26 23:47:43] 2025-11-27 06:47:11,471 | INFO     | chi2: 2.0279804349580663
[2025-11-26 23:47:43] 2025-11-27 06:47:11,471 | INFO     | current chi2=2.0279804349580663 (change=0.03025010253052939 %)
[2025-11-26 23:47:43] 2025-11-27 06:47:11,471 | INFO     | right removable region: 237
[2025-11-26 23:47:43] 2025-11-27 06:47:11,471 | INFO     | sum of square deviations: 4449178977.514394
[2025-11-26 23:47:43] 2025-11-27 06:47:11,472 | INFO     | sum of deviations: 32711908483.975304
[2025-11-26 23:47:43] 2025-11-27 06:47:11,472 | INFO     | mean x: 1764218607.0781894
[2025-11-26 23:47:43] 2025-11-27 06:47:11,472 | INFO     | mean y: 2874802.5802469137
[2025-11-26 23:47:43] 2025-11-27 06:47:11,472 | INFO     | intersect: -12968272888.293112
[2025-11-26 23:47:43] 2025-11-27 06:47:11,472 | INFO     | chi2: 2.16055980267958
[2025-11-26 23:47:43] 2025-11-27 06:47:11,472 | INFO     | current chi2=2.16055980267958 (change=47.469999813533725 %)
[2025-11-26 23:47:43] 2025-11-27 06:47:11,472 | INFO     | sum of square deviations: 4180150524.1386695
[2025-11-26 23:47:43] 2025-11-27 06:47:11,473 | INFO     | sum of deviations: 23167483850.26893
[2025-11-26 23:47:43] 2025-11-27 06:47:11,473 | INFO     | mean x: 1764218759.5756302
[2025-11-26 23:47:43] 2025-11-27 06:47:11,473 | INFO     | mean y: 2880200.87394958
[2025-11-26 23:47:43] 2025-11-27 06:47:11,473 | INFO     | intersect: -9774880045.985052
[2025-11-26 23:47:43] 2025-11-27 06:47:11,473 | INFO     | chi2: 2.1428487361023376
[2025-11-26 23:47:43] 2025-11-27 06:47:11,473 | INFO     | current chi2=2.1428487361023376 (change=0.8197443345597976 %)
[2025-11-26 23:47:43] 2025-11-27 06:47:11,473 | INFO     | left removable region: 20
[2025-11-26 23:47:43] 2025-11-27 06:47:11,473 | INFO     | sum of square deviations: 3168437612.221197
[2025-11-26 23:47:43] 2025-11-27 06:47:11,474 | INFO     | sum of deviations: 60977500812.23966
[2025-11-26 23:47:43] 2025-11-27 06:47:11,474 | INFO     | mean x: 1764218729.059908
[2025-11-26 23:47:43] 2025-11-27 06:47:11,474 | INFO     | mean y: 2917756.9815668203
[2025-11-26 23:47:43] 2025-11-27 06:47:11,474 | INFO     | intersect: -33949983372.986675
[2025-11-26 23:47:43] 2025-11-27 06:47:11,474 | INFO     | chi2: 0.009401362937221557
[2025-11-26 23:47:43] 2025-11-27 06:47:11,474 | INFO     | current memory leak: 19.25 B/s (using 217 data points, chi2=0.01)
[2025-11-26 23:47:43] 2025-11-27 06:47:11,474 | INFO     | could have reported an average CPU frequency of 4641 MHz (12 samples)
[2025-11-26 23:47:43] 2025-11-27 06:47:11,475 | INFO     | ..............................
[2025-11-26 23:47:43] 2025-11-27 06:47:11,475 | INFO     | . Timing measurements:
[2025-11-26 23:47:43] 2025-11-27 06:47:11,475 | INFO     | . get job = 0 s
[2025-11-26 23:47:43] 2025-11-27 06:47:11,475 | INFO     | . initial setup = 6 s
[2025-11-26 23:47:43] 2025-11-27 06:47:11,475 | INFO     | . payload setup = 3 s
[2025-11-26 23:47:43] 2025-11-27 06:47:11,475 | INFO     | . stage-in = 0 s
[2025-11-26 23:47:43] 2025-11-27 06:47:11,475 | INFO     | . payload execution = 15104 s
[2025-11-26 23:47:43] 2025-11-27 06:47:11,475 | INFO     | . stage-out = 3 s
[2025-11-26 23:47:43] 2025-11-27 06:47:11,475 | INFO     | . log creation = 0 s
[2025-11-26 23:47:43] 2025-11-27 06:47:11,475 | INFO     | ..............................
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | 
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | job summary report
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | --------------------------------------------------
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | PanDA job id: 6895618328
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | task id: 47556149
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | errors: (none)
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | pilot state: finished 
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | transexitcode: 0
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | exeerrorcode: 0
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | exeerrordiag: 
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | exitcode: 0
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | exitmsg: OK
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | cpuconsumptiontime: 107405 s
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | nevents: 1000
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | neventsw: 0
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | pid: 2876382
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | pgrp: 2876382
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | corecount: 8
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | event service: False
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | sizes: {0: 2284321, 2: 2284583, 11: 2284611, 15110: 2316730, 15114: 2325822, 15116: 2326012}
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | --------------------------------------------------
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | 
[2025-11-26 23:47:43] 2025-11-27 06:47:11,651 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | job 6895618328 has completed (purged errors)
[2025-11-26 23:47:43] 2025-11-27 06:47:11,665 | INFO     | overall cleanup function is called
[2025-11-26 23:47:43] 2025-11-27 06:47:12,677 | INFO     | --- collectZombieJob: --- 10, [2876382]
[2025-11-26 23:47:43] 2025-11-27 06:47:12,677 | INFO     | zombie collector waiting for pid 2876382
[2025-11-26 23:47:43] 2025-11-27 06:47:12,677 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:47:43] 2025-11-27 06:47:12,677 | INFO     | collected zombie processes
[2025-11-26 23:47:43] 2025-11-27 06:47:12,677 | INFO     | will attempt to kill all subprocesses of pid=2876382
[2025-11-26 23:47:43] 2025-11-27 06:47:12,752 | INFO     | process IDs to be killed: [2876382] (in reverse order)
[2025-11-26 23:47:43] 2025-11-27 06:47:12,786 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:47:43] 2025-11-27 06:47:12,786 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:47:43] 2025-11-27 06:47:12,789 | INFO     | did not find any defunct processes belonging to 2876382
[2025-11-26 23:47:43] 2025-11-27 06:47:12,791 | INFO     | did not find any defunct processes belonging to 2876382
[2025-11-26 23:47:43] 2025-11-27 06:47:12,791 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:47:43] 2025-11-27 06:47:12,791 | INFO     | ready for new job
[2025-11-26 23:47:43] 2025-11-27 06:47:12,791 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:47:43] 2025-11-27 06:47:12,793 | INFO     | ***************************************
[2025-11-26 23:47:43] 2025-11-27 06:47:12,793 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:47:43] 2025-11-27 06:47:12,793 | INFO     | ***************************************
[2025-11-26 23:47:43] 2025-11-27 06:47:12,793 | INFO     | 
[2025-11-26 23:47:43] 2025-11-27 06:47:12,794 | INFO     | architecture information:
[2025-11-26 23:47:43] 2025-11-27 06:47:12,794 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:47:43] 2025-11-27 06:47:12,801 | INFO     | cat /etc/os-release:
[2025-11-26 23:47:43] NAME="CentOS Linux"
[2025-11-26 23:47:43] VERSION="7 (Core)"
[2025-11-26 23:47:43] ID="centos"
[2025-11-26 23:47:43] ID_LIKE="rhel fedora"
[2025-11-26 23:47:43] VERSION_ID="7"
[2025-11-26 23:47:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:47:43] ANSI_COLOR="0;31"
[2025-11-26 23:47:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:47:43] HOME_URL="https://www.centos.org/"
[2025-11-26 23:47:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:47:43] 
[2025-11-26 23:47:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:47:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:47:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:47:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:47:43] 
[2025-11-26 23:47:43] 2025-11-27 06:47:12,801 | INFO     | ***************************************
[2025-11-26 23:47:43] 2025-11-27 06:47:13,303 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-26 23:47:43] 2025-11-27 06:47:13,312 | INFO     | sufficient remaining disk space (177570054144 B)
[2025-11-26 23:47:43] 2025-11-27 06:47:13,313 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:47:43] 2025-11-27 06:47:13,313 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:47:43] 2025-11-27 06:47:13,313 | INFO     | update_server=False
[2025-11-26 23:47:43] 2025-11-27 06:47:13,313 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:47:43] 2025-11-27 06:47:13,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:47:43] 2025-11-27 06:47:13,313 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:47:43] 2025-11-27 06:47:13,313 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:47:43] 2025-11-27 06:47:13,313 | INFO     | aborting loop
[2025-11-26 23:47:43] 2025-11-27 06:47:13,670 | INFO     | all payload control threads have been joined
[2025-11-26 23:47:43] 2025-11-27 06:47:14,153 | INFO     | all data control threads have been joined
[2025-11-26 23:47:43] 2025-11-27 06:47:14,253 | INFO     | all job control threads have been joined
[2025-11-26 23:47:43] 2025-11-27 06:47:14,318 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:14,319 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:14,319 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:14,552 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:14,675 | INFO     | [payload] control thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:14,960 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:15,074 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:15,149 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:15,158 | INFO     | [data] control thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:15,258 | INFO     | [job] control thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:15,318 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:15,546 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:15,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:47:43] 2025-11-27 06:47:15,619 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:15,765 | INFO     | [job] validate thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:15,820 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:19,600 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:47:43] 2025-11-27 06:47:27,056 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:47:43] 2025-11-27 06:47:28,906 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123605104334656)>', '<ExcThread(monitor, started 123604754736896)>']
[2025-11-26 23:47:43] 2025-11-27 06:47:33,931 | INFO     | all workflow threads have been joined
[2025-11-26 23:47:43] 2025-11-27 06:47:33,931 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:47:43] 2025-11-27 06:47:33,931 | INFO     | traces error code: 0
[2025-11-26 23:47:43] 2025-11-27 06:47:33,932 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:47:43] 2025-11-27 06:47:43,553 | INFO     | PID=2869716 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:47:43] 2025-11-27 06:47:43,553 | INFO     | .. there are 3 such processes running
[2025-11-26 23:47:43] 2025-11-27 06:47:43,554 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:47:43] 2025-11-27 06:47:43,554 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:47:43] 2025-11-27 06:47:43,554 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:47:43] 2025-11-27 06:47:43,554 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:47:43] 2025-11-27 06:47:43,554 | INFO     | [monitor] control thread has ended
[2025-11-26 23:47:43] 2025-11-27 06:47:43,607 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:47:43] 2025-11-27 06:47:43,608 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:47:43] 2025-11-27 06:47:43,610 [wrapper] pilotpid: 2869716
[2025-11-26 23:47:43] 2025-11-27 06:47:43,611 [wrapper] Pilot exit status: 0
[2025-11-26 23:47:43] 2025-11-27 06:47:43,615 [wrapper] pandaids: 6895618328
[2025-11-26 23:47:43] 2025-11-27 06:47:43,637 [wrapper] cleanup supervisor_pilot 3061465 2869717
[2025-11-26 23:47:43] 2025-11-27 06:47:43,639 [wrapper] Test setup, not cleaning
[2025-11-26 23:47:43] 2025-11-27 06:47:43,640 [wrapper] apfmon messages muted
[2025-11-26 23:47:43] 2025-11-27 06:47:43,642 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:47:43] 2025-11-27 06:47:43,643 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:47:43]  *** Error codes and diagnostics ***
[2025-11-26 23:47:43]     "exeErrorCode": 0,
[2025-11-26 23:47:43]     "exeErrorDiag": "",
[2025-11-26 23:47:43]     "pilotErrorCode": 0,
[2025-11-26 23:47:43]     "pilotErrorDiag": "",
[2025-11-26 23:47:43]  *** Listing of results directory ***
[2025-11-26 23:47:43] total 1312012
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc    576529 Nov 24 04:12 pilot3.tar.gz
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc      5112 Nov 24 04:36 queuedata.json
[2025-11-26 23:47:43] -rwx------ 1 boinc boinc     36292 Nov 24 04:39 runpilot2-wrapper.sh
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc       100 Nov 26 19:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:47:43] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 19:34 run_atlas
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc       105 Nov 26 19:34 job.xml
[2025-11-26 23:47:43] -rw-r--r-- 2 boinc boinc     15847 Nov 26 19:34 start_atlas.sh
[2025-11-26 23:47:43] drwxrwx--x 2 boinc boinc      4096 Nov 26 19:34 shared
[2025-11-26 23:47:43] -rw-r--r-- 2 boinc boinc    590104 Nov 26 19:34 input.tar.gz
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc      9935 Nov 26 19:34 init_data.xml
[2025-11-26 23:47:43] -rw-r--r-- 2 boinc boinc 409643593 Nov 26 19:34 EVNT.47483658._001330.pool.root.1
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc         0 Nov 26 19:34 boinc_lockfile
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc      2785 Nov 26 19:34 pandaJob.out
[2025-11-26 23:47:43] -rw------- 1 boinc boinc    991554 Nov 26 19:34 agis_schedconf.cvmfs.json
[2025-11-26 23:47:43] drwx------ 5 boinc boinc      4096 Nov 26 19:35 pilot3
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc       532 Nov 26 23:42 boinc_task_state.xml
[2025-11-26 23:47:43] -rw------- 1 boinc boinc 922400842 Nov 26 23:46 HITS.47556149._003166.pool.root.1
[2025-11-26 23:47:43] -rw------- 1 boinc boinc      1038 Nov 26 23:47 memory_monitor_summary.json
[2025-11-26 23:47:43] -rw------- 1 boinc boinc   1516240 Nov 26 23:47 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:47:43] -rw------- 1 boinc boinc   1557624 Nov 26 23:47 log.47556149._003166.job.log.tgz.1
[2025-11-26 23:47:43] -rw------- 1 boinc boinc      8552 Nov 26 23:47 heartbeat.json
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc      8192 Nov 26 23:47 boinc_mmap_file
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc        29 Nov 26 23:47 wrapper_checkpoint.txt
[2025-11-26 23:47:43] -rw------- 1 boinc boinc       822 Nov 26 23:47 pilotlog.txt
[2025-11-26 23:47:43] -rw------- 1 boinc boinc        95 Nov 26 23:47 pilot_heartbeat.json
[2025-11-26 23:47:43] -rw------- 1 boinc boinc   2208497 Nov 26 23:47 log.47556149._003166.job.log.1
[2025-11-26 23:47:43] -rw------- 1 boinc boinc       353 Nov 26 23:47 output.list
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc       620 Nov 26 23:47 runtime_log
[2025-11-26 23:47:43] -rw------- 1 boinc boinc   3788800 Nov 26 23:47 result.tar.gz
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc      8923 Nov 26 23:47 runtime_log.err
[2025-11-26 23:47:43] -rw------- 1 boinc boinc       662 Nov 26 23:47 2yoKDmk5jh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmj2IKDmmbbP2m.diag
[2025-11-26 23:47:43] -rw-r--r-- 1 boinc boinc     21431 Nov 26 23:47 stderr.txt
[2025-11-26 23:47:43] HITS file was successfully produced:
[2025-11-26 23:47:43] -rw------- 1 boinc boinc 922400842 Nov 26 23:46 shared/HITS.pool.root.1
[2025-11-26 23:47:43]  *** Contents of shared directory: ***
[2025-11-26 23:47:43] total 1305132
[2025-11-26 23:47:43] -rw-r--r-- 2 boinc boinc     15847 Nov 26 19:34 start_atlas.sh
[2025-11-26 23:47:43] -rw-r--r-- 2 boinc boinc    590104 Nov 26 19:34 input.tar.gz
[2025-11-26 23:47:43] -rw-r--r-- 2 boinc boinc 409643593 Nov 26 19:34 ATLAS.root_0
[2025-11-26 23:47:43] -rw------- 1 boinc boinc 922400842 Nov 26 23:46 HITS.pool.root.1
[2025-11-26 23:47:43] -rw------- 1 boinc boinc   3788800 Nov 26 23:47 result.tar.gz
23:47:44 (2865860): run_atlas exited; CPU time 107268.345019
23:47:44 (2865860): called boinc_finish(0)

</stderr_txt>
]]>

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