Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:57:03 (3019531): wrapper (7.7.26015): starting
17:57:03 (3019531): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:57:03] Arguments: --nthreads 8
[2025-11-26 17:57:03] Threads: 8
[2025-11-26 17:57:03] Checking for CVMFS
[2025-11-26 17:57:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:57:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:57:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:57:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:57:03] 2.13.3.0 11772 30633 377396 153337 2 950 17128687 32935936 51337 16776704 0 175929055 99.511 225398178 38925 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 17:57:03] CVMFS is ok
[2025-11-26 17:57:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:57:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:57:03] Further information can be found at the LHC@home message board.
[2025-11-26 17:57:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:57:03] Checking for apptainer binary...
[2025-11-26 17:57:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:57:03] Running /usr/bin/apptainer --version
[2025-11-26 17:57:03] apptainer version 1.4.4-1.el9
[2025-11-26 17:57:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:57:03] c7-3-28.aglt2.org
[2025-11-26 17:57:03] apptainer works
[2025-11-26 17:57:03] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:57:03] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:57:03] Starting ATLAS job with PandaID=6892540434
[2025-11-26 17:57:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:59:55]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:59:55] 2025-11-27 12:59:05,183 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:59:55] 2025-11-27 12:59:05,184 | INFO     | sum of square deviations: 176023425958.9988
[2025-11-27 07:59:55] 2025-11-27 12:59:05,198 | INFO     | sum of deviations: 765773321154.0852
[2025-11-27 07:59:55] 2025-11-27 12:59:05,198 | INFO     | mean x: 1764223090.9987922
[2025-11-27 07:59:55] 2025-11-27 12:59:05,198 | INFO     | mean y: 2900431.084541063
[2025-11-27 07:59:55] 2025-11-27 12:59:05,198 | INFO     | intersect: -7672185815.478791
[2025-11-27 07:59:55] 2025-11-27 12:59:05,199 | INFO     | chi2: 6.018849473494399
[2025-11-27 07:59:55] 2025-11-27 12:59:05,200 | INFO     | sum of square deviations: 172853948307.74734
[2025-11-27 07:59:55] 2025-11-27 12:59:05,215 | INFO     | sum of deviations: 1055055770607.4001
[2025-11-27 07:59:55] 2025-11-27 12:59:05,215 | INFO     | mean x: 1764222938.5018227
[2025-11-27 07:59:55] 2025-11-27 12:59:05,215 | INFO     | mean y: 2914348.39854192
[2025-11-27 07:59:55] 2025-11-27 12:59:05,215 | INFO     | intersect: -10765445935.685673
[2025-11-27 07:59:55] 2025-11-27 12:59:05,216 | INFO     | chi2: 2.7114447915813926
[2025-11-27 07:59:55] 2025-11-27 12:59:05,216 | INFO     | current chi2=2.7114447915813926 (change=54.95077915601711 %)
[2025-11-27 07:59:55] 2025-11-27 12:59:05,217 | INFO     | sum of square deviations: 169722700484.9892
[2025-11-27 07:59:55] 2025-11-27 12:59:05,231 | INFO     | sum of deviations: 1146306391638.812
[2025-11-27 07:59:55] 2025-11-27 12:59:05,231 | INFO     | mean x: 1764222786.0036676
[2025-11-27 07:59:55] 2025-11-27 12:59:05,231 | INFO     | mean y: 2918777.729828851
[2025-11-27 07:59:55] 2025-11-27 12:59:05,231 | INFO     | intersect: -11912634357.424877
[2025-11-27 07:59:55] 2025-11-27 12:59:05,232 | INFO     | chi2: 1.9341247734120972
[2025-11-27 07:59:55] 2025-11-27 12:59:05,232 | INFO     | current chi2=1.9341247734120972 (change=28.668111575893086 %)
[2025-11-27 07:59:55] 2025-11-27 12:59:05,233 | INFO     | sum of square deviations: 166629499643.22543
[2025-11-27 07:59:55] 2025-11-27 12:59:05,246 | INFO     | sum of deviations: 1130554387320.6416
[2025-11-27 07:59:55] 2025-11-27 12:59:05,247 | INFO     | mean x: 1764222633.5055351
[2025-11-27 07:59:55] 2025-11-27 12:59:05,247 | INFO     | mean y: 2918001.1906519067
[2025-11-27 07:59:55] 2025-11-27 12:59:05,247 | INFO     | intersect: -11967049158.22973
[2025-11-27 07:59:55] 2025-11-27 12:59:05,248 | INFO     | chi2: 1.933652134225611
[2025-11-27 07:59:55] 2025-11-27 12:59:05,248 | INFO     | current chi2=1.933652134225611 (change=0.024436850868333748 %)
[2025-11-27 07:59:55] 2025-11-27 12:59:05,248 | INFO     | right removable region: 812
[2025-11-27 07:59:55] 2025-11-27 12:59:05,249 | INFO     | sum of square deviations: 172853696377.74734
[2025-11-27 07:59:55] 2025-11-27 12:59:05,262 | INFO     | sum of deviations: 581411157463.6653
[2025-11-27 07:59:55] 2025-11-27 12:59:05,263 | INFO     | mean x: 1764223243.5018227
[2025-11-27 07:59:55] 2025-11-27 12:59:05,263 | INFO     | mean y: 2909281.8894289187
[2025-11-27 07:59:55] 2025-11-27 12:59:05,263 | INFO     | intersect: -5931236759.090156
[2025-11-27 07:59:55] 2025-11-27 12:59:05,264 | INFO     | chi2: 4.286387998280166
[2025-11-27 07:59:55] 2025-11-27 12:59:05,264 | INFO     | current chi2=4.286387998280166 (change=28.7839309297165 %)
[2025-11-27 07:59:55] 2025-11-27 12:59:05,264 | INFO     | sum of square deviations: 169722246583.98068
[2025-11-27 07:59:55] 2025-11-27 12:59:05,278 | INFO     | sum of deviations: 545175914164.1904
[2025-11-27 07:59:55] 2025-11-27 12:59:05,278 | INFO     | mean x: 1764223396.00489
[2025-11-27 07:59:55] 2025-11-27 12:59:05,278 | INFO     | mean y: 2911046.4523227382
[2025-11-27 07:59:55] 2025-11-27 12:59:05,279 | INFO     | intersect: -5664066159.337266
[2025-11-27 07:59:55] 2025-11-27 12:59:05,279 | INFO     | chi2: 4.266255734215202
[2025-11-27 07:59:55] 2025-11-27 12:59:05,279 | INFO     | current chi2=4.266255734215202 (change=0.4696789948329837 %)
[2025-11-27 07:59:55] 2025-11-27 12:59:05,280 | INFO     | left removable region: 20
[2025-11-27 07:59:55] 2025-11-27 12:59:05,280 | INFO     | sum of square deviations: 154047635733.874
[2025-11-27 07:59:55] 2025-11-27 12:59:05,293 | INFO     | sum of deviations: 826862357499.2751
[2025-11-27 07:59:55] 2025-11-27 12:59:05,293 | INFO     | mean x: 1764223213.0126262
[2025-11-27 07:59:55] 2025-11-27 12:59:05,293 | INFO     | mean y: 2933018.3724747472
[2025-11-27 07:59:55] 2025-11-27 12:59:05,293 | INFO     | intersect: -9466668758.487465
[2025-11-27 07:59:55] 2025-11-27 12:59:05,294 | INFO     | chi2: 0.10947125138947753
[2025-11-27 07:59:55] 2025-11-27 12:59:05,294 | INFO     | current memory leak: 5.37 B/s (using 792 data points, chi2=0.11)
[2025-11-27 07:59:55] 2025-11-27 12:59:05,295 | INFO     | could have reported an average CPU frequency of 3149 MHz (31 samples)
[2025-11-27 07:59:55] 2025-11-27 12:59:05,295 | INFO     | ..............................
[2025-11-27 07:59:55] 2025-11-27 12:59:05,295 | INFO     | . Timing measurements:
[2025-11-27 07:59:55] 2025-11-27 12:59:05,295 | INFO     | . get job = 0 s
[2025-11-27 07:59:55] 2025-11-27 12:59:05,296 | INFO     | . initial setup = 2 s
[2025-11-27 07:59:55] 2025-11-27 12:59:05,296 | INFO     | . payload setup = 7 s
[2025-11-27 07:59:55] 2025-11-27 12:59:05,296 | INFO     | . stage-in = 0 s
[2025-11-27 07:59:55] 2025-11-27 12:59:05,296 | INFO     | . payload execution = 50461 s
[2025-11-27 07:59:55] 2025-11-27 12:59:05,296 | INFO     | . stage-out = 3 s
[2025-11-27 07:59:55] 2025-11-27 12:59:05,296 | INFO     | . log creation = 0 s
[2025-11-27 07:59:55] 2025-11-27 12:59:05,296 | INFO     | ..............................
[2025-11-27 07:59:55] 2025-11-27 12:59:05,855 | INFO     | 
[2025-11-27 07:59:55] 2025-11-27 12:59:05,855 | INFO     | job summary report
[2025-11-27 07:59:55] 2025-11-27 12:59:05,858 | INFO     | --------------------------------------------------
[2025-11-27 07:59:55] 2025-11-27 12:59:05,859 | INFO     | PanDA job id: 6892540434
[2025-11-27 07:59:55] 2025-11-27 12:59:05,859 | INFO     | task id: 47493029
[2025-11-27 07:59:55] 2025-11-27 12:59:05,859 | INFO     | errors: (none)
[2025-11-27 07:59:55] 2025-11-27 12:59:05,859 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:59:55] 2025-11-27 12:59:05,859 | INFO     | pilot state: finished 
[2025-11-27 07:59:55] 2025-11-27 12:59:05,859 | INFO     | transexitcode: 0
[2025-11-27 07:59:55] 2025-11-27 12:59:05,860 | INFO     | exeerrorcode: 0
[2025-11-27 07:59:55] 2025-11-27 12:59:05,860 | INFO     | exeerrordiag: 
[2025-11-27 07:59:55] 2025-11-27 12:59:05,860 | INFO     | exitcode: 0
[2025-11-27 07:59:55] 2025-11-27 12:59:05,860 | INFO     | exitmsg: OK
[2025-11-27 07:59:55] 2025-11-27 12:59:05,860 | INFO     | cpuconsumptiontime: 202411 s
[2025-11-27 07:59:55] 2025-11-27 12:59:05,860 | INFO     | nevents: 1000
[2025-11-27 07:59:55] 2025-11-27 12:59:05,860 | INFO     | neventsw: 0
[2025-11-27 07:59:55] 2025-11-27 12:59:05,860 | INFO     | pid: 3033745
[2025-11-27 07:59:55] 2025-11-27 12:59:05,861 | INFO     | pgrp: 3033745
[2025-11-27 07:59:55] 2025-11-27 12:59:05,861 | INFO     | corecount: 8
[2025-11-27 07:59:55] 2025-11-27 12:59:05,861 | INFO     | event service: False
[2025-11-27 07:59:55] 2025-11-27 12:59:05,861 | INFO     | sizes: {0: 2283476, 1: 2284332, 6: 2284594, 12: 2284622, 50472: 2332850, 50477: 2341844, 50479: 2342028, 50491: 2342274}
[2025-11-27 07:59:55] 2025-11-27 12:59:05,861 | INFO     | --------------------------------------------------
[2025-11-27 07:59:55] 2025-11-27 12:59:05,861 | INFO     | 
[2025-11-27 07:59:55] 2025-11-27 12:59:05,861 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 07:59:55] 2025-11-27 12:59:05,881 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,881 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,881 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,882 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,882 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,882 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,882 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,882 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,882 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,882 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,882 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,883 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,883 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,883 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,883 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,883 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,883 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,883 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:59:55] 2025-11-27 12:59:05,884 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,884 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:59:55] 2025-11-27 12:59:05,884 | INFO     | job 6892540434 has completed (purged errors)
[2025-11-27 07:59:55] 2025-11-27 12:59:05,884 | INFO     | overall cleanup function is called
[2025-11-27 07:59:55] 2025-11-27 12:59:06,484 | INFO     | PID=3023413 has CPU usage=19.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 07:59:55] 2025-11-27 12:59:06,484 | INFO     | .. there are 73 such processes running
[2025-11-27 07:59:55] 2025-11-27 12:59:06,906 | INFO     | --- collectZombieJob: --- 10, [3033745]
[2025-11-27 07:59:55] 2025-11-27 12:59:06,906 | INFO     | zombie collector waiting for pid 3033745
[2025-11-27 07:59:55] 2025-11-27 12:59:06,906 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:59:55] 2025-11-27 12:59:06,906 | INFO     | collected zombie processes
[2025-11-27 07:59:55] 2025-11-27 12:59:06,906 | INFO     | will attempt to kill all subprocesses of pid=3033745
[2025-11-27 07:59:55] 2025-11-27 12:59:07,711 | INFO     | process IDs to be killed: [3033745] (in reverse order)
[2025-11-27 07:59:55] 2025-11-27 12:59:08,236 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:59:55] 2025-11-27 12:59:08,237 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:59:55] 2025-11-27 12:59:08,268 | INFO     | did not find any defunct processes belonging to 3033745
[2025-11-27 07:59:55] 2025-11-27 12:59:08,299 | INFO     | did not find any defunct processes belonging to 3033745
[2025-11-27 07:59:55] 2025-11-27 12:59:08,306 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:59:55] 2025-11-27 12:59:08,306 | INFO     | ready for new job
[2025-11-27 07:59:55] 2025-11-27 12:59:08,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:59:55] 2025-11-27 12:59:08,310 | INFO     | ***************************************
[2025-11-27 07:59:55] 2025-11-27 12:59:08,310 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:59:55] 2025-11-27 12:59:08,310 | INFO     | ***************************************
[2025-11-27 07:59:55] 2025-11-27 12:59:08,310 | INFO     | 
[2025-11-27 07:59:55] 2025-11-27 12:59:08,315 | INFO     | architecture information:
[2025-11-27 07:59:55] 2025-11-27 12:59:08,316 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:59:55] 2025-11-27 12:59:08,345 | INFO     | cat /etc/os-release:
[2025-11-27 07:59:55] NAME="CentOS Linux"
[2025-11-27 07:59:55] VERSION="7 (Core)"
[2025-11-27 07:59:55] ID="centos"
[2025-11-27 07:59:55] ID_LIKE="rhel fedora"
[2025-11-27 07:59:55] VERSION_ID="7"
[2025-11-27 07:59:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:59:55] ANSI_COLOR="0;31"
[2025-11-27 07:59:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:59:55] HOME_URL="https://www.centos.org/"
[2025-11-27 07:59:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:59:55] 
[2025-11-27 07:59:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:59:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:59:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:59:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:59:55] 
[2025-11-27 07:59:55] 2025-11-27 12:59:08,345 | INFO     | ***************************************
[2025-11-27 07:59:55] 2025-11-27 12:59:08,863 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 07:59:55] 2025-11-27 12:59:08,911 | INFO     | sufficient remaining disk space (69102206976 B)
[2025-11-27 07:59:55] 2025-11-27 12:59:08,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:59:55] 2025-11-27 12:59:08,912 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:59:55] 2025-11-27 12:59:08,912 | INFO     | update_server=False
[2025-11-27 07:59:55] 2025-11-27 12:59:08,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:59:55] 2025-11-27 12:59:08,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:59:55] 2025-11-27 12:59:08,912 | INFO     | aborting loop
[2025-11-27 07:59:55] 2025-11-27 12:59:08,913 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:59:55] 2025-11-27 12:59:09,149 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:59:55] 2025-11-27 12:59:09,242 | INFO     | all data control threads have been joined
[2025-11-27 07:59:55] 2025-11-27 12:59:09,295 | INFO     | all payload control threads have been joined
[2025-11-27 07:59:55] 2025-11-27 12:59:09,830 | INFO     | all job control threads have been joined
[2025-11-27 07:59:55] 2025-11-27 12:59:09,918 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:09,918 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:10,063 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:10,107 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:10,249 | INFO     | [data] control thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:10,301 | INFO     | [payload] control thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:10,430 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:59:55] 2025-11-27 12:59:10,620 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:10,722 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:10,836 | INFO     | [job] control thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:11,055 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:11,088 | INFO     | [job] validate thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:11,156 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:11,180 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:11,282 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:11,436 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:12,928 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:59:55] 2025-11-27 12:59:39,356 | INFO     | PID=3023413 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 07:59:55] 2025-11-27 12:59:39,357 | INFO     | .. there are 73 such processes running
[2025-11-27 07:59:55] 2025-11-27 12:59:39,358 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:59:55] 2025-11-27 12:59:39,359 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:59:55] 2025-11-27 12:59:39,359 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:59:55] 2025-11-27 12:59:47,794 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:59:55] 2025-11-27 12:59:49,610 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139919105857344)>', '<ExcThread(monitor, started 139918584030976)>']
[2025-11-27 07:59:55] 2025-11-27 12:59:50,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:59:55] 2025-11-27 12:59:50,422 | INFO     | [monitor] control thread has ended
[2025-11-27 07:59:55] 2025-11-27 12:59:54,636 | INFO     | all workflow threads have been joined
[2025-11-27 07:59:55] 2025-11-27 12:59:54,636 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:59:55] 2025-11-27 12:59:54,636 | INFO     | traces error code: 0
[2025-11-27 07:59:55] 2025-11-27 12:59:54,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:59:55] 2025-11-27 12:59:54,938 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:59:55] 2025-11-27 12:59:54,975 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:59:55] 2025-11-27 12:59:55,005 [wrapper] pilotpid: 3023413
[2025-11-27 07:59:55] 2025-11-27 12:59:55,050 [wrapper] Pilot exit status: 0
[2025-11-27 07:59:55] 2025-11-27 12:59:55,214 [wrapper] pandaids: 6892540434
[2025-11-27 07:59:55] 2025-11-27 12:59:55,382 [wrapper] cleanup supervisor_pilot 3767188 3023414
[2025-11-27 07:59:55] 2025-11-27 12:59:55,413 [wrapper] Test setup, not cleaning
[2025-11-27 07:59:55] 2025-11-27 12:59:55,427 [wrapper] apfmon messages muted
[2025-11-27 07:59:55] 2025-11-27 12:59:55,436 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:59:55] 2025-11-27 12:59:55,463 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:59:55]  *** Error codes and diagnostics ***
[2025-11-27 07:59:55]     "exeErrorCode": 0,
[2025-11-27 07:59:55]     "exeErrorDiag": "",
[2025-11-27 07:59:55]     "pilotErrorCode": 0,
[2025-11-27 07:59:55]     "pilotErrorDiag": "",
[2025-11-27 07:59:55]  *** Listing of results directory ***
[2025-11-27 07:59:55] total 1334388
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 02:37 pilot3.tar.gz
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 02:38 queuedata.json
[2025-11-27 07:59:55] -rwx------. 1 boincer umatlas     36292 Nov 19 02:39 runpilot2-wrapper.sh
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas       100 Nov 26 17:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:59:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 17:57 run_atlas
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas       105 Nov 26 17:57 job.xml
[2025-11-27 07:59:55] -rw-r--r--. 2 boincer umatlas 410368350 Nov 26 17:57 EVNT.47493027._000237.pool.root.1
[2025-11-27 07:59:55] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 17:57 start_atlas.sh
[2025-11-27 07:59:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 17:57 shared
[2025-11-27 07:59:55] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 17:57 input.tar.gz
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas         0 Nov 26 17:57 boinc_lockfile
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 17:57 pandaJob.out
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas    991546 Nov 26 17:57 agis_schedconf.cvmfs.json
[2025-11-27 07:59:55] drwx------. 5 boincer umatlas      4096 Nov 26 17:57 pilot3
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas       533 Nov 27 07:49 boinc_task_state.xml
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 07:54 init_data.xml
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas 936085724 Nov 27 07:58 HITS.47493029._002326.pool.root.1
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas      1069 Nov 27 07:58 memory_monitor_summary.json
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas   1516240 Nov 27 07:58 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas   1978712 Nov 27 07:58 log.47493029._002326.job.log.tgz.1
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas      8620 Nov 27 07:59 heartbeat.json
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas        95 Nov 27 07:59 pilot_heartbeat.json
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas      4824 Nov 27 07:59 pilotlog.txt
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas        29 Nov 27 07:59 wrapper_checkpoint.txt
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas   6039579 Nov 27 07:59 log.47493029._002326.job.log.1
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 07:59 boinc_mmap_file
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas       353 Nov 27 07:59 output.list
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas       620 Nov 27 07:59 runtime_log
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas   8038400 Nov 27 07:59 result.tar.gz
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas      8699 Nov 27 07:59 runtime_log.err
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas       663 Nov 27 07:59 ESCMDmtxrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfvGKDmL1TZRn.diag
[2025-11-27 07:59:55] -rw-r--r--. 1 boincer umatlas     21245 Nov 27 07:59 stderr.txt
[2025-11-27 07:59:55] HITS file was successfully produced:
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas 936085724 Nov 27 07:58 shared/HITS.pool.root.1
[2025-11-27 07:59:55]  *** Contents of shared directory: ***
[2025-11-27 07:59:55] total 1323356
[2025-11-27 07:59:55] -rw-r--r--. 2 boincer umatlas 410368350 Nov 26 17:57 ATLAS.root_0
[2025-11-27 07:59:55] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 17:57 start_atlas.sh
[2025-11-27 07:59:55] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 17:57 input.tar.gz
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas 936085724 Nov 27 07:58 HITS.pool.root.1
[2025-11-27 07:59:55] -rw-------. 1 boincer umatlas   8038400 Nov 27 07:59 result.tar.gz
08:00:17 (3019531): run_atlas exited; CPU time 204016.324539
08:00:17 (3019531): called boinc_finish(0)

</stderr_txt>
]]>

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