Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:56:27 (28928): wrapper (7.7.26015): starting
21:56:27 (28928): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 21:56:27] Arguments: --nthreads 8
[2025-11-28 21:56:27] Threads: 8
[2025-11-28 21:56:27] Checking for CVMFS
[2025-11-28 21:56:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 21:56:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 21:56:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 21:56:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 21:56:30] 2.11.2.0 6427 175563 135500 153418 0 85 16646805 25165825 2504 130560 10 57009038 99.881 33870939 2342 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 21:56:30] CVMFS is ok
[2025-11-28 21:56:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 21:56:30] Checking for apptainer binary...
[2025-11-28 21:56:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 21:56:30] Running /usr/bin/apptainer --version
[2025-11-28 21:56:30] apptainer version 1.3.2-1.el7
[2025-11-28 21:56:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 21:56:38] cg-vwn308.simple-grid.lan
[2025-11-28 21:56:38] apptainer works
[2025-11-28 21:56:38] Set ATHENA_PROC_NUMBER=8
[2025-11-28 21:56:38] Set ATHENA_CORE_NUMBER=8
[2025-11-28 21:56:38] Starting ATLAS job with PandaID=6892537368
[2025-11-28 21:56:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 21:21:44]  *** The last 200 lines of the pilot log: ***
[2025-11-29 21:21:44] 2025-11-29 20:20:56,415 | INFO     | monitor loop #5654: job 0:6892537368 is in state 'finished'
[2025-11-29 21:21:44] 2025-11-29 20:20:56,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 21:21:44] 2025-11-29 20:20:56,509 | INFO     | time since job start (84049s) is within the limit (172800.0s)
[2025-11-29 21:21:44] 2025-11-29 20:20:57,672 | INFO     | PID=32728 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 21:21:44] 2025-11-29 20:20:57,672 | INFO     | .. there are 9 such processes running
[2025-11-29 21:21:44] 2025-11-29 20:20:58,676 | INFO     | time since job start (84051s) is within the limit (172800.0s)
[2025-11-29 21:21:44] 2025-11-29 20:20:58,925 | INFO     | monitor loop #5655: job 0:6892537368 is in state 'finished'
[2025-11-29 21:21:44] 2025-11-29 20:20:58,926 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 21:21:44] 2025-11-29 20:21:00,682 | INFO     | time since job start (84053s) is within the limit (172800.0s)
[2025-11-29 21:21:44] 2025-11-29 20:21:01,430 | INFO     | monitor loop #5656: job 0:6892537368 is in state 'finished'
[2025-11-29 21:21:44] 2025-11-29 20:21:01,431 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 21:21:44] 2025-11-29 20:21:02,690 | INFO     | time since job start (84055s) is within the limit (172800.0s)
[2025-11-29 21:21:44] 2025-11-29 20:21:03,938 | INFO     | monitor loop #5657: job 0:6892537368 is in state 'finished'
[2025-11-29 21:21:44] 2025-11-29 20:21:03,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 21:21:44] 2025-11-29 20:21:04,705 | INFO     | time since job start (84057s) is within the limit (172800.0s)
[2025-11-29 21:21:44] 2025-11-29 20:21:06,011 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 21:21:44] 2025-11-29 20:21:06,012 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-29 21:21:44] 2025-11-29 20:21:06,014 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6892537368/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 21:21:44] 2025-11-29 20:21:06,015 | INFO     | extracted standard info from prmon json
[2025-11-29 21:21:44] 2025-11-29 20:21:06,015 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 21:21:44] 2025-11-29 20:21:06,015 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 21:21:44] 2025-11-29 20:21:06,042 | INFO     | fitting pss+swap vs Time
[2025-11-29 21:21:44] 2025-11-29 20:21:06,044 | INFO     | sum of square deviations: 793846616563.787
[2025-11-29 21:21:44] 2025-11-29 20:21:06,107 | INFO     | sum of deviations: 2675769368022.7837
[2025-11-29 21:21:44] 2025-11-29 20:21:06,107 | INFO     | mean x: 1764405808.5774853
[2025-11-29 21:21:44] 2025-11-29 20:21:06,107 | INFO     | mean y: 2830424.869883041
[2025-11-29 21:21:44] 2025-11-29 20:21:06,107 | INFO     | intersect: -5944342387.667707
[2025-11-29 21:21:44] 2025-11-29 20:21:06,109 | INFO     | chi2: 24.029695736143196
[2025-11-29 21:21:44] 2025-11-29 20:21:06,111 | INFO     | sum of square deviations: 785174382587.9596
[2025-11-29 21:21:44] 2025-11-29 20:21:06,170 | INFO     | sum of deviations: 3120252118685.3
[2025-11-29 21:21:44] 2025-11-29 20:21:06,170 | INFO     | mean x: 1764405656.081438
[2025-11-29 21:21:44] 2025-11-29 20:21:06,170 | INFO     | mean y: 2838240.8620689656
[2025-11-29 21:21:44] 2025-11-29 20:21:06,171 | INFO     | intersect: -7008840449.497762
[2025-11-29 21:21:44] 2025-11-29 20:21:06,172 | INFO     | chi2: 20.89682654011456
[2025-11-29 21:21:44] 2025-11-29 20:21:06,172 | INFO     | current chi2=20.89682654011456 (change=13.037490072404331 %)
[2025-11-29 21:21:44] 2025-11-29 20:21:06,173 | INFO     | right removable region: 1362
[2025-11-29 21:21:44] 2025-11-29 20:21:06,175 | INFO     | sum of square deviations: 785173483447.9603
[2025-11-29 21:21:44] 2025-11-29 20:21:06,235 | INFO     | sum of deviations: 2096472410308.9382
[2025-11-29 21:21:44] 2025-11-29 20:21:06,236 | INFO     | mean x: 1764405961.081438
[2025-11-29 21:21:44] 2025-11-29 20:21:06,236 | INFO     | mean y: 2840610.4600146734
[2025-11-29 21:21:44] 2025-11-29 20:21:06,236 | INFO     | intersect: -4708256358.515792
[2025-11-29 21:21:44] 2025-11-29 20:21:06,238 | INFO     | chi2: 19.216262508422464
[2025-11-29 21:21:44] 2025-11-29 20:21:06,238 | INFO     | current chi2=19.216262508422464 (change=20.03118674732457 %)
[2025-11-29 21:21:44] 2025-11-29 20:21:06,238 | INFO     | left removable region: 10
[2025-11-29 21:21:44] 2025-11-29 20:21:06,240 | INFO     | sum of square deviations: 766316497924.9893
[2025-11-29 21:21:44] 2025-11-29 20:21:06,292 | INFO     | sum of deviations: 2157336477112.649
[2025-11-29 21:21:44] 2025-11-29 20:21:06,292 | INFO     | mean x: 1764405930.5902367
[2025-11-29 21:21:44] 2025-11-29 20:21:06,292 | INFO     | mean y: 2858868.9127218933
[2025-11-29 21:21:44] 2025-11-29 20:21:06,293 | INFO     | intersect: -4964301938.407907
[2025-11-29 21:21:44] 2025-11-29 20:21:06,294 | INFO     | chi2: 12.048529129666063
[2025-11-29 21:21:44] 2025-11-29 20:21:06,294 | INFO     | current memory leak: 2.82 B/s (using 1352 data points, chi2=12.05)
[2025-11-29 21:21:44] 2025-11-29 20:21:06,296 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-29 21:21:44] 2025-11-29 20:21:06,296 | INFO     | ..............................
[2025-11-29 21:21:44] 2025-11-29 20:21:06,296 | INFO     | . Timing measurements:
[2025-11-29 21:21:44] 2025-11-29 20:21:06,297 | INFO     | . get job = 0 s
[2025-11-29 21:21:44] 2025-11-29 20:21:06,297 | INFO     | . initial setup = 9 s
[2025-11-29 21:21:44] 2025-11-29 20:21:06,297 | INFO     | . payload setup = 154 s
[2025-11-29 21:21:44] 2025-11-29 20:21:06,297 | INFO     | . stage-in = 0 s
[2025-11-29 21:21:44] 2025-11-29 20:21:06,297 | INFO     | . payload execution = 83604 s
[2025-11-29 21:21:44] 2025-11-29 20:21:06,297 | INFO     | . stage-out = 5 s
[2025-11-29 21:21:44] 2025-11-29 20:21:06,297 | INFO     | . log creation = 2 s
[2025-11-29 21:21:44] 2025-11-29 20:21:06,297 | INFO     | ..............................
[2025-11-29 21:21:44] 2025-11-29 20:21:06,420 | INFO     | 
[2025-11-29 21:21:44] 2025-11-29 20:21:06,421 | INFO     | job summary report
[2025-11-29 21:21:44] 2025-11-29 20:21:06,421 | INFO     | --------------------------------------------------
[2025-11-29 21:21:44] 2025-11-29 20:21:06,421 | INFO     | PanDA job id: 6892537368
[2025-11-29 21:21:44] 2025-11-29 20:21:06,421 | INFO     | task id: 47493029
[2025-11-29 21:21:44] 2025-11-29 20:21:06,421 | INFO     | errors: (none)
[2025-11-29 21:21:44] 2025-11-29 20:21:06,421 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 21:21:44] 2025-11-29 20:21:06,421 | INFO     | pilot state: finished 
[2025-11-29 21:21:44] 2025-11-29 20:21:06,422 | INFO     | transexitcode: 0
[2025-11-29 21:21:44] 2025-11-29 20:21:06,422 | INFO     | exeerrorcode: 0
[2025-11-29 21:21:44] 2025-11-29 20:21:06,422 | INFO     | exeerrordiag: 
[2025-11-29 21:21:44] 2025-11-29 20:21:06,422 | INFO     | exitcode: 0
[2025-11-29 21:21:44] 2025-11-29 20:21:06,422 | INFO     | exitmsg: OK
[2025-11-29 21:21:44] 2025-11-29 20:21:06,422 | INFO     | cpuconsumptiontime: 314335 s
[2025-11-29 21:21:44] 2025-11-29 20:21:06,422 | INFO     | nevents: 1000
[2025-11-29 21:21:44] 2025-11-29 20:21:06,422 | INFO     | neventsw: 0
[2025-11-29 21:21:44] 2025-11-29 20:21:06,422 | INFO     | pid: 6918
[2025-11-29 21:21:44] 2025-11-29 20:21:06,423 | INFO     | pgrp: 6918
[2025-11-29 21:21:44] 2025-11-29 20:21:06,423 | INFO     | corecount: 8
[2025-11-29 21:21:44] 2025-11-29 20:21:06,423 | INFO     | event service: False
[2025-11-29 21:21:44] 2025-11-29 20:21:06,423 | INFO     | sizes: {0: 2284133, 1: 2284332, 12: 2284332, 23: 2284360, 33: 2284388, 44: 2284444, 55: 2284600, 66: 2284628, 76: 2284656, 87: 2284712, 96: 2285002, 98: 2285310, 8
[2025-11-29 21:21:44] 2025-11-29 20:21:06,423 | INFO     | --------------------------------------------------
[2025-11-29 21:21:44] 2025-11-29 20:21:06,423 | INFO     | 
[2025-11-29 21:21:44] 2025-11-29 20:21:06,423 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-29 21:21:44] 2025-11-29 20:21:06,714 | INFO     | time since job start (84059s) is within the limit (172800.0s)
[2025-11-29 21:21:44] 2025-11-29 20:21:06,949 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,949 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,949 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,949 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,949 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,950 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,950 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,950 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,950 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,950 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,950 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,950 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,950 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,951 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,951 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,951 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,951 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,951 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 21:21:44] 2025-11-29 20:21:06,951 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,951 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 21:21:44] 2025-11-29 20:21:06,951 | INFO     | job 6892537368 has completed (purged errors)
[2025-11-29 21:21:44] 2025-11-29 20:21:06,952 | INFO     | overall cleanup function is called
[2025-11-29 21:21:44] 2025-11-29 20:21:07,976 | INFO     | --- collectZombieJob: --- 10, [6918]
[2025-11-29 21:21:44] 2025-11-29 20:21:07,977 | INFO     | zombie collector waiting for pid 6918
[2025-11-29 21:21:44] 2025-11-29 20:21:07,977 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 21:21:44] 2025-11-29 20:21:07,977 | INFO     | collected zombie processes
[2025-11-29 21:21:44] 2025-11-29 20:21:07,977 | INFO     | will attempt to kill all subprocesses of pid=6918
[2025-11-29 21:21:44] 2025-11-29 20:21:08,118 | INFO     | process IDs to be killed: [6918] (in reverse order)
[2025-11-29 21:21:44] 2025-11-29 20:21:08,958 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 21:21:44] 2025-11-29 20:21:08,958 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 21:21:44] 2025-11-29 20:21:08,962 | INFO     | did not find any defunct processes belonging to 6918
[2025-11-29 21:21:44] 2025-11-29 20:21:08,965 | INFO     | did not find any defunct processes belonging to 6918
[2025-11-29 21:21:44] 2025-11-29 20:21:09,037 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 21:21:44] 2025-11-29 20:21:09,037 | INFO     | ready for new job
[2025-11-29 21:21:44] 2025-11-29 20:21:09,037 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 21:21:44] 2025-11-29 20:21:09,042 | INFO     | ***************************************
[2025-11-29 21:21:44] 2025-11-29 20:21:09,043 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 21:21:44] 2025-11-29 20:21:09,043 | INFO     | ***************************************
[2025-11-29 21:21:44] 2025-11-29 20:21:09,043 | INFO     | 
[2025-11-29 21:21:44] 2025-11-29 20:21:09,043 | INFO     | pilot is running in a VM
[2025-11-29 21:21:44] 2025-11-29 20:21:09,044 | INFO     | architecture information:
[2025-11-29 21:21:44] 2025-11-29 20:21:09,056 | INFO     | executing command: cat /etc/os-release
[2025-11-29 21:21:44] 2025-11-29 20:21:09,288 | INFO     | cat /etc/os-release:
[2025-11-29 21:21:44] NAME="CentOS Linux"
[2025-11-29 21:21:44] VERSION="7 (Core)"
[2025-11-29 21:21:44] ID="centos"
[2025-11-29 21:21:44] ID_LIKE="rhel fedora"
[2025-11-29 21:21:44] VERSION_ID="7"
[2025-11-29 21:21:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 21:21:44] ANSI_COLOR="0;31"
[2025-11-29 21:21:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 21:21:44] HOME_URL="https://www.centos.org/"
[2025-11-29 21:21:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 21:21:44] 
[2025-11-29 21:21:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 21:21:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 21:21:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 21:21:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 21:21:44] 
[2025-11-29 21:21:44] 2025-11-29 20:21:09,288 | INFO     | ***************************************
[2025-11-29 21:21:44] 2025-11-29 20:21:09,792 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-29 21:21:44] 2025-11-29 20:21:10,085 | INFO     | sufficient remaining disk space (488051310592 B)
[2025-11-29 21:21:44] 2025-11-29 20:21:10,086 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 21:21:44] 2025-11-29 20:21:10,086 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 21:21:44] 2025-11-29 20:21:10,086 | INFO     | update_server=False
[2025-11-29 21:21:44] 2025-11-29 20:21:10,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 21:21:44] 2025-11-29 20:21:10,089 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 21:21:44] 2025-11-29 20:21:10,090 | INFO     | aborting loop
[2025-11-29 21:21:44] 2025-11-29 20:21:10,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 21:21:44] 2025-11-29 20:21:10,409 | INFO     | all job control threads have been joined
[2025-11-29 21:21:44] 2025-11-29 20:21:10,452 | INFO     | all payload control threads have been joined
[2025-11-29 21:21:44] 2025-11-29 20:21:10,551 | INFO     | all data control threads have been joined
[2025-11-29 21:21:44] 2025-11-29 20:21:10,622 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 21:21:44] 2025-11-29 20:21:11,092 | INFO     | [job] retrieve thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:11,096 | INFO     | [job] job monitor thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:11,251 | INFO     | [data] copytool_in thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:11,415 | INFO     | [job] control thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:11,431 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 21:21:44] 2025-11-29 20:21:11,458 | INFO     | [payload] control thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:11,522 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:11,526 | INFO     | [payload] validate_post thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:11,557 | INFO     | [data] control thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:11,805 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:12,184 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:12,247 | INFO     | [data] copytool_out thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:12,336 | INFO     | [payload] failed_post thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:12,437 | INFO     | [job] queue monitor thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:12,440 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:12,525 | INFO     | [job] validate thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:14,631 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 21:21:44] 2025-11-29 20:21:34,093 | INFO     | [monitor] cgroup control has ended
[2025-11-29 21:21:44] 2025-11-29 20:21:34,787 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140517187725120)>', '<ExcThread(monitor, started 140516599510784)>']
[2025-11-29 21:21:44] 2025-11-29 20:21:39,819 | INFO     | all workflow threads have been joined
[2025-11-29 21:21:44] 2025-11-29 20:21:39,836 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 21:21:44] 2025-11-29 20:21:39,837 | INFO     | traces error code: 0
[2025-11-29 21:21:44] 2025-11-29 20:21:39,837 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 21:21:44] 2025-11-29 20:21:39,876 | INFO     | PID=32728 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 21:21:44] 2025-11-29 20:21:39,877 | INFO     | .. there are 9 such processes running
[2025-11-29 21:21:44] 2025-11-29 20:21:39,878 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 21:21:44] 2025-11-29 20:21:39,878 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 21:21:44] 2025-11-29 20:21:39,878 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 21:21:44] 2025-11-29 20:21:39,878 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 21:21:44] 2025-11-29 20:21:39,878 | INFO     | [monitor] control thread has ended
[2025-11-29 21:21:44] 2025-11-29 20:21:40,270 [wrapper] ==== pilot stdout END ====
[2025-11-29 21:21:44] 2025-11-29 20:21:40,361 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 21:21:44] 2025-11-29 20:21:40,465 [wrapper] pilotpid: 32728
[2025-11-29 21:21:44] 2025-11-29 20:21:40,548 [wrapper] Pilot exit status: 0
[2025-11-29 21:21:44] 2025-11-29 20:21:40,950 [wrapper] pandaids: 6892537368
[2025-11-29 21:21:44] 2025-11-29 20:21:42,120 [wrapper] cleanup supervisor_pilot 10376 32729
[2025-11-29 21:21:44] 2025-11-29 20:21:42,185 [wrapper] Test setup, not cleaning
[2025-11-29 21:21:44] 2025-11-29 20:21:42,294 [wrapper] apfmon messages muted
[2025-11-29 21:21:44] 2025-11-29 20:21:42,413 [wrapper] ==== wrapper stdout END ====
[2025-11-29 21:21:44] 2025-11-29 20:21:42,457 [wrapper] ==== wrapper stderr END ====
[2025-11-29 21:21:44]  *** Error codes and diagnostics ***
[2025-11-29 21:21:44]     "exeErrorCode": 0,
[2025-11-29 21:21:44]     "exeErrorDiag": "",
[2025-11-29 21:21:44]     "pilotErrorCode": 0,
[2025-11-29 21:21:44]     "pilotErrorDiag": "",
[2025-11-29 21:21:44]  *** Listing of results directory ***
[2025-11-29 21:21:44] total 1310564
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc    576529 Nov 19 08:27 pilot3.tar.gz
[2025-11-29 21:21:44] -rwx------. 1 boinc boinc     36292 Nov 19 08:31 runpilot2-wrapper.sh
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:31 queuedata.json
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc       100 Nov 28 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 21:21:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 21:56 run_atlas
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc       105 Nov 28 21:56 job.xml
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc      6391 Nov 28 21:56 init_data.xml
[2025-11-29 21:21:44] -rw-r--r--. 2 boinc boinc 408098322 Nov 28 21:56 EVNT.47493027._000217.pool.root.1
[2025-11-29 21:21:44] -rw-r--r--. 2 boinc boinc     15120 Nov 28 21:56 start_atlas.sh
[2025-11-29 21:21:44] drwxrwx--x. 2 boinc boinc        68 Nov 28 21:56 shared
[2025-11-29 21:21:44] -rw-r--r--. 2 boinc boinc    590096 Nov 28 21:56 input.tar.gz
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc         0 Nov 28 21:56 boinc_lockfile
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc      2773 Nov 28 21:56 pandaJob.out
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc    991802 Nov 28 21:59 agis_schedconf.cvmfs.json
[2025-11-29 21:21:44] drwx------. 5 boinc boinc      4096 Nov 28 22:00 pilot3
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc       533 Nov 29 20:54 boinc_task_state.xml
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc 902730668 Nov 29 21:17 HITS.47493029._002122.pool.root.1
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc      1029 Nov 29 21:19 memory_monitor_summary.json
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc   1516240 Nov 29 21:19 agis_ddmendpoints.agis.ALL.json
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc   2450922 Nov 29 21:19 log.47493029._002122.job.log.tgz.1
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc      8628 Nov 29 21:21 heartbeat.json
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc        29 Nov 29 21:21 wrapper_checkpoint.txt
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc      8192 Nov 29 21:21 boinc_mmap_file
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc        95 Nov 29 21:21 pilot_heartbeat.json
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc       820 Nov 29 21:21 pilotlog.txt
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc  11190864 Nov 29 21:21 log.47493029._002122.job.log.1
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc       353 Nov 29 21:21 output.list
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc       620 Nov 29 21:21 runtime_log
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc  13660160 Nov 29 21:21 result.tar.gz
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc      8703 Nov 29 21:21 runtime_log.err
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc       662 Nov 29 21:21 IY0NDm9prf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmisGKDmBsbZIo.diag
[2025-11-29 21:21:44] -rw-r--r--. 1 boinc boinc     21501 Nov 29 21:21 stderr.txt
[2025-11-29 21:21:44] HITS file was successfully produced:
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc 902730668 Nov 29 21:17 shared/HITS.pool.root.1
[2025-11-29 21:21:44]  *** Contents of shared directory: ***
[2025-11-29 21:21:44] total 1294048
[2025-11-29 21:21:44] -rw-r--r--. 2 boinc boinc 408098322 Nov 28 21:56 ATLAS.root_0
[2025-11-29 21:21:44] -rw-r--r--. 2 boinc boinc     15120 Nov 28 21:56 start_atlas.sh
[2025-11-29 21:21:44] -rw-r--r--. 2 boinc boinc    590096 Nov 28 21:56 input.tar.gz
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc 902730668 Nov 29 21:17 HITS.pool.root.1
[2025-11-29 21:21:44] -rw-------. 1 boinc boinc  13660160 Nov 29 21:21 result.tar.gz
21:21:45 (28928): run_atlas exited; CPU time 314968.770315
21:21:45 (28928): called boinc_finish(0)

</stderr_txt>
]]>

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