Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
11:05:01 (363721): wrapper (7.7.26015): starting
11:05:01 (363721): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 11:05:01] Arguments: --nthreads 12
[2025-12-01 11:05:01] Threads: 12
[2025-12-01 11:05:01] Checking for CVMFS
[2025-12-01 11:05:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 11:05:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 11:05:02] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 11:05:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 11:05:02] 2.13.3.0 16277 847 49960 153523 2 75 5394741 10240001 693 130560 27 4652902 99.995 43211 10 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-01 11:05:02] CVMFS is ok
[2025-12-01 11:05:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 11:05:02] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-01 11:05:02] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-01 11:05:02] Further information can be found at the LHC@home message board.
[2025-12-01 11:05:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 11:05:02] Checking for apptainer binary...
[2025-12-01 11:05:02] apptainer is not installed, using version from CVMFS
[2025-12-01 11:05:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 11:05:02] pots
[2025-12-01 11:05:02] apptainer works
[2025-12-01 11:05:02] Set ATHENA_PROC_NUMBER=12
[2025-12-01 11:05:02] Set ATHENA_CORE_NUMBER=12
[2025-12-01 11:05:02] Starting ATLAS job with PandaID=6895333603
[2025-12-01 11:05:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 12:43:33]  *** The last 200 lines of the pilot log: ***
[2025-12-01 12:43:33] 2025-12-01 17:42:33,210 | INFO     | job 6895333603 has finished - writing final server update
[2025-12-01 12:43:33] 2025-12-01 17:42:33,211 | INFO     | total number of processed events: 1000 (read)
[2025-12-01 12:43:33] 2025-12-01 17:42:33,212 | INFO     | executing command: lscpu
[2025-12-01 12:43:33] 2025-12-01 17:42:33,229 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-01 12:43:33] 2025-12-01 17:42:33,617 | INFO     | time since job start (5839s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:35,565 | INFO     | monitor loop #416: job 0:6895333603 is in state 'finished'
[2025-12-01 12:43:33] 2025-12-01 17:42:35,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 12:43:33] 2025-12-01 17:42:35,620 | INFO     | time since job start (5841s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:37,626 | INFO     | time since job start (5843s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:38,069 | INFO     | monitor loop #417: job 0:6895333603 is in state 'finished'
[2025-12-01 12:43:33] 2025-12-01 17:42:38,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 12:43:33] 2025-12-01 17:42:38,709 | INFO     | PID=367772 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 12:43:33] 2025-12-01 17:42:39,710 | INFO     | time since job start (5845s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:40,572 | INFO     | monitor loop #418: job 0:6895333603 is in state 'finished'
[2025-12-01 12:43:33] 2025-12-01 17:42:40,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 12:43:33] 2025-12-01 17:42:41,715 | INFO     | time since job start (5847s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:43,076 | INFO     | monitor loop #419: job 0:6895333603 is in state 'finished'
[2025-12-01 12:43:33] 2025-12-01 17:42:43,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 12:43:33] 2025-12-01 17:42:43,721 | INFO     | time since job start (5849s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:45,580 | INFO     | monitor loop #420: job 0:6895333603 is in state 'finished'
[2025-12-01 12:43:33] 2025-12-01 17:42:45,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 12:43:33] 2025-12-01 17:42:45,727 | INFO     | time since job start (5851s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:47,733 | INFO     | time since job start (5853s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:48,082 | INFO     | monitor loop #421: job 0:6895333603 is in state 'finished'
[2025-12-01 12:43:33] 2025-12-01 17:42:48,083 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 12:43:33] 2025-12-01 17:42:49,739 | INFO     | time since job start (5855s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:50,586 | INFO     | monitor loop #422: job 0:6895333603 is in state 'finished'
[2025-12-01 12:43:33] 2025-12-01 17:42:50,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 12:43:33] 2025-12-01 17:42:51,745 | INFO     | time since job start (5857s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:53,090 | INFO     | monitor loop #423: job 0:6895333603 is in state 'finished'
[2025-12-01 12:43:33] 2025-12-01 17:42:53,090 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 12:43:33] 2025-12-01 17:42:53,751 | INFO     | time since job start (5859s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:55,593 | INFO     | monitor loop #424: job 0:6895333603 is in state 'finished'
[2025-12-01 12:43:33] 2025-12-01 17:42:55,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 12:43:33] 2025-12-01 17:42:55,757 | INFO     | time since job start (5861s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:57,763 | INFO     | time since job start (5863s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:42:58,097 | INFO     | monitor loop #425: job 0:6895333603 is in state 'finished'
[2025-12-01 12:43:33] 2025-12-01 17:42:58,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 12:43:33] 2025-12-01 17:42:59,768 | INFO     | time since job start (5865s) is within the limit (172800.0s)
[2025-12-01 12:43:33] 2025-12-01 17:43:00,200 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 12:43:33] 2025-12-01 17:43:00,201 | INFO     | found 14 cores (14 cores per socket, 1 socket) , CPU MHz: 3908.5292142857143
[2025-12-01 12:43:33] 2025-12-01 17:43:00,204 | INFO     | using path: /var/lib/boinc-client/slots/15/PanDA_Pilot-6895333603/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 12:43:33] 2025-12-01 17:43:00,204 | INFO     | extracted standard info from prmon json
[2025-12-01 12:43:33] 2025-12-01 17:43:00,204 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 12:43:33] 2025-12-01 17:43:00,204 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | fitting pss+swap vs Time
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | sum of square deviations: 218571540.0
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | sum of deviations: -1644345584.999999
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | mean x: 1764608120.0
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | mean y: 3473249.179775281
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | intersect: 13278877592.202423
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | chi2: 1.9911064802556395
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | current memory leak: -7.52 B/s (using 89 data points, chi2=1.99)
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | could have reported an average CPU frequency of 3926 MHz (7 samples)
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | ..............................
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | . Timing measurements:
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | . get job = 0 s
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | . initial setup = 2 s
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | . payload setup = 2 s
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | . stage-in = 0 s
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | . payload execution = 5818 s
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | . stage-out = 0 s
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | . log creation = 0 s
[2025-12-01 12:43:33] 2025-12-01 17:43:00,205 | INFO     | ..............................
[2025-12-01 12:43:33] 2025-12-01 17:43:00,225 | INFO     | 
[2025-12-01 12:43:33] 2025-12-01 17:43:00,225 | INFO     | job summary report
[2025-12-01 12:43:33] 2025-12-01 17:43:00,225 | INFO     | --------------------------------------------------
[2025-12-01 12:43:33] 2025-12-01 17:43:00,225 | INFO     | PanDA job id: 6895333603
[2025-12-01 12:43:33] 2025-12-01 17:43:00,225 | INFO     | task id: 47556137
[2025-12-01 12:43:33] 2025-12-01 17:43:00,225 | INFO     | errors: (none)
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | pilot state: finished 
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | transexitcode: 0
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | exeerrorcode: 0
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | exeerrordiag: 
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | exitcode: 0
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | exitmsg: OK
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | cpuconsumptiontime: 60881 s
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | nevents: 1000
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | neventsw: 0
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | pid: 374220
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | pgrp: 374220
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | corecount: 12
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | event service: False
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | sizes: {0: 2284272, 1: 2284534, 11: 2284562, 5824: 2312231, 5826: 2321297, 5854: 2321487}
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | --------------------------------------------------
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | 
[2025-12-01 12:43:33] 2025-12-01 17:43:00,226 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/15
[2025-12-01 12:43:33] 2025-12-01 17:43:00,246 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,246 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,246 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,246 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,246 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,246 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,246 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,246 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | job 6895333603 has completed (purged errors)
[2025-12-01 12:43:33] 2025-12-01 17:43:00,247 | INFO     | overall cleanup function is called
[2025-12-01 12:43:33] 2025-12-01 17:43:00,856 | INFO     | PID=367772 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 12:43:33] 2025-12-01 17:43:01,257 | INFO     | --- collectZombieJob: --- 10, [374220]
[2025-12-01 12:43:33] 2025-12-01 17:43:01,257 | INFO     | zombie collector waiting for pid 374220
[2025-12-01 12:43:33] 2025-12-01 17:43:01,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 12:43:33] 2025-12-01 17:43:01,257 | INFO     | collected zombie processes
[2025-12-01 12:43:33] 2025-12-01 17:43:01,258 | INFO     | will attempt to kill all subprocesses of pid=374220
[2025-12-01 12:43:33] 2025-12-01 17:43:01,331 | INFO     | process IDs to be killed: [374220] (in reverse order)
[2025-12-01 12:43:33] 2025-12-01 17:43:01,381 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 12:43:33] 2025-12-01 17:43:01,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 12:43:33] 2025-12-01 17:43:01,383 | INFO     | did not find any defunct processes belonging to 374220
[2025-12-01 12:43:33] 2025-12-01 17:43:01,384 | INFO     | did not find any defunct processes belonging to 374220
[2025-12-01 12:43:33] 2025-12-01 17:43:01,384 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 12:43:33] 2025-12-01 17:43:01,384 | INFO     | ready for new job
[2025-12-01 12:43:33] 2025-12-01 17:43:01,384 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 12:43:33] 2025-12-01 17:43:01,385 | INFO     | ***************************************
[2025-12-01 12:43:33] 2025-12-01 17:43:01,385 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 12:43:33] 2025-12-01 17:43:01,385 | INFO     | ***************************************
[2025-12-01 12:43:33] 2025-12-01 17:43:01,385 | INFO     | 
[2025-12-01 12:43:33] 2025-12-01 17:43:01,385 | INFO     | architecture information:
[2025-12-01 12:43:33] 2025-12-01 17:43:01,386 | INFO     | executing command: cat /etc/os-release
[2025-12-01 12:43:33] 2025-12-01 17:43:01,393 | INFO     | cat /etc/os-release:
[2025-12-01 12:43:33] NAME="CentOS Linux"
[2025-12-01 12:43:33] VERSION="7 (Core)"
[2025-12-01 12:43:33] ID="centos"
[2025-12-01 12:43:33] ID_LIKE="rhel fedora"
[2025-12-01 12:43:33] VERSION_ID="7"
[2025-12-01 12:43:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 12:43:33] ANSI_COLOR="0;31"
[2025-12-01 12:43:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 12:43:33] HOME_URL="https://www.centos.org/"
[2025-12-01 12:43:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 12:43:33] 
[2025-12-01 12:43:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 12:43:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 12:43:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 12:43:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 12:43:33] 
[2025-12-01 12:43:33] 2025-12-01 17:43:01,394 | INFO     | ***************************************
[2025-12-01 12:43:33] 2025-12-01 17:43:01,895 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/15
[2025-12-01 12:43:33] 2025-12-01 17:43:01,910 | INFO     | sufficient remaining disk space (399927934976 B)
[2025-12-01 12:43:33] 2025-12-01 17:43:01,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 12:43:33] 2025-12-01 17:43:01,910 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 12:43:33] 2025-12-01 17:43:01,910 | INFO     | update_server=False
[2025-12-01 12:43:33] 2025-12-01 17:43:01,911 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 12:43:33] 2025-12-01 17:43:01,911 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 12:43:33] 2025-12-01 17:43:01,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 12:43:33] 2025-12-01 17:43:01,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 12:43:33] 2025-12-01 17:43:01,913 | INFO     | aborting loop
[2025-12-01 12:43:33] 2025-12-01 17:43:02,435 | INFO     | all data control threads have been joined
[2025-12-01 12:43:33] 2025-12-01 17:43:02,661 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 12:43:33] 2025-12-01 17:43:02,916 | INFO     | [job] retrieve thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:02,917 | INFO     | [job] queue monitor thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:02,919 | INFO     | [job] job monitor thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:03,083 | INFO     | [payload] failed_post thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:03,173 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:03,277 | INFO     | all job control threads have been joined
[2025-12-01 12:43:33] 2025-12-01 17:43:03,391 | INFO     | all payload control threads have been joined
[2025-12-01 12:43:33] 2025-12-01 17:43:03,441 | INFO     | [data] control thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:03,555 | INFO     | [data] copytool_in thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:03,651 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:03,659 | INFO     | [job] validate thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:03,745 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:03,777 | INFO     | [payload] validate_post thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:03,904 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:04,282 | INFO     | [job] control thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:04,397 | INFO     | [payload] control thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:04,666 | INFO     | [data] copytool_out thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:05,919 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 12:43:33] 2025-12-01 17:43:23,466 | INFO     | [monitor] cgroup control has ended
[2025-12-01 12:43:33] 2025-12-01 17:43:24,146 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138948834387776)>', '<ExcThread(monitor, started 138948349253376)>']
[2025-12-01 12:43:33] 2025-12-01 17:43:29,172 | INFO     | all workflow threads have been joined
[2025-12-01 12:43:33] 2025-12-01 17:43:29,172 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 12:43:33] 2025-12-01 17:43:29,172 | INFO     | traces error code: 0
[2025-12-01 12:43:33] 2025-12-01 17:43:29,173 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 12:43:33] 2025-12-01 17:43:33,009 | INFO     | PID=367772 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 12:43:33] 2025-12-01 17:43:33,009 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 12:43:33] 2025-12-01 17:43:33,009 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 12:43:33] 2025-12-01 17:43:33,009 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 12:43:33] 2025-12-01 17:43:33,009 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 12:43:33] 2025-12-01 17:43:33,009 | INFO     | [monitor] control thread has ended
[2025-12-01 12:43:33] 2025-12-01 17:43:33,059 [wrapper] ==== pilot stdout END ====
[2025-12-01 12:43:33] 2025-12-01 17:43:33,061 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 12:43:33] 2025-12-01 17:43:33,063 [wrapper] pilotpid: 367772
[2025-12-01 12:43:33] 2025-12-01 17:43:33,065 [wrapper] Pilot exit status: 0
[2025-12-01 12:43:33] 2025-12-01 17:43:33,072 [wrapper] pandaids: 6895333603
[2025-12-01 12:43:33] 2025-12-01 17:43:33,086 [wrapper] cleanup supervisor_pilot  398945 367773
[2025-12-01 12:43:33] 2025-12-01 17:43:33,087 [wrapper] Test setup, not cleaning
[2025-12-01 12:43:33] 2025-12-01 17:43:33,089 [wrapper] apfmon messages muted
[2025-12-01 12:43:33] 2025-12-01 17:43:33,092 [wrapper] ==== wrapper stdout END ====
[2025-12-01 12:43:33] 2025-12-01 17:43:33,094 [wrapper] ==== wrapper stderr END ====
[2025-12-01 12:43:33]  *** Error codes and diagnostics ***
[2025-12-01 12:43:33]     "exeErrorCode": 0,
[2025-12-01 12:43:33]     "exeErrorDiag": "",
[2025-12-01 12:43:33]     "pilotErrorCode": 0,
[2025-12-01 12:43:33]     "pilotErrorDiag": "",
[2025-12-01 12:43:33]  *** Listing of results directory ***
[2025-12-01 12:43:33] total 1320252
[2025-12-01 12:43:33] -rw-r--r-- 1 root root    576529 Nov 21 20:38 pilot3.tar.gz
[2025-12-01 12:43:33] -rw-r--r-- 1 root root      5112 Nov 21 20:47 queuedata.json
[2025-12-01 12:43:33] -rwx------ 1 4871 1028     36292 Nov 21 20:48 runpilot2-wrapper.sh
[2025-12-01 12:43:33] -rw-r--r-- 1 root root       100 Dec  1 11:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 12:43:33] -rwxr-xr-x 1 root root      7986 Dec  1 11:05 run_atlas
[2025-12-01 12:43:33] -rw-r--r-- 1 root root       105 Dec  1 11:05 job.xml
[2025-12-01 12:43:33] -rw-r--r-- 2 root root 412359497 Dec  1 11:05 EVNT.47483658._000207.pool.root.1
[2025-12-01 12:43:33] -rw-r--r-- 1 root root      9321 Dec  1 11:05 init_data.xml
[2025-12-01 12:43:33] drwxrwx--x 2 root root      4096 Dec  1 11:05 shared
[2025-12-01 12:43:33] -rw-r--r-- 2 root root    590098 Dec  1 11:05 input.tar.gz
[2025-12-01 12:43:33] -rw-r--r-- 2 root root     15847 Dec  1 11:05 start_atlas.sh
[2025-12-01 12:43:33] -rw-r--r-- 1 root root         0 Dec  1 11:05 boinc_lockfile
[2025-12-01 12:43:33] -rw-r--r-- 1 root root      2785 Dec  1 11:05 pandaJob.out
[2025-12-01 12:43:33] -rw------- 1 root root    992142 Dec  1 11:05 agis_schedconf.cvmfs.json
[2025-12-01 12:43:33] -rw------- 1 root root   1516240 Dec  1 11:05 agis_ddmendpoints.agis.ALL.json
[2025-12-01 12:43:33] drwxr-xr-x 5  320  320      4096 Dec  1 11:05 pilot3
[2025-12-01 12:43:33] -rw-r--r-- 1 root root       530 Dec  1 12:37 boinc_task_state.xml
[2025-12-01 12:43:33] -rw------- 1 root root 930271306 Dec  1 12:42 HITS.47556137._002037.pool.root.1
[2025-12-01 12:43:33] -rw------- 1 root root      1043 Dec  1 12:42 memory_monitor_summary.json
[2025-12-01 12:43:33] -rw------- 1 root root   1846882 Dec  1 12:42 log.47556137._002037.job.log.tgz.1
[2025-12-01 12:43:33] -rw------- 1 root root        95 Dec  1 12:42 pilot_heartbeat.json
[2025-12-01 12:43:33] -rw------- 1 root root      8585 Dec  1 12:43 heartbeat.json
[2025-12-01 12:43:33] -rw-r--r-- 1 root root        27 Dec  1 12:43 wrapper_checkpoint.txt
[2025-12-01 12:43:33] -rw-r--r-- 1 root root      8192 Dec  1 12:43 boinc_mmap_file
[2025-12-01 12:43:33] -rw------- 1 root root       746 Dec  1 12:43 pilotlog.txt
[2025-12-01 12:43:33] -rw------- 1 root root    844765 Dec  1 12:43 log.47556137._002037.job.log.1
[2025-12-01 12:43:33] -rw------- 1 root root       353 Dec  1 12:43 output.list
[2025-12-01 12:43:33] -rw-r--r-- 1 root root       620 Dec  1 12:43 runtime_log
[2025-12-01 12:43:33] -rw------- 1 root root   2713600 Dec  1 12:43 result.tar.gz
[2025-12-01 12:43:33] -rw------- 1 root root       648 Dec  1 12:43 TUdKDmvurg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmetHKDmpwrgwm.diag
[2025-12-01 12:43:33] -rw-r--r-- 1 root root      8877 Dec  1 12:43 runtime_log.err
[2025-12-01 12:43:33] -rw-r--r-- 1 root root     22758 Dec  1 12:43 stderr.txt
[2025-12-01 12:43:33] HITS file was successfully produced:
[2025-12-01 12:43:33] -rw------- 1 root root 930271306 Dec  1 12:42 shared/HITS.pool.root.1
[2025-12-01 12:43:33]  *** Contents of shared directory: ***
[2025-12-01 12:43:33] total 1314424
[2025-12-01 12:43:33] -rw-r--r-- 2 root root 412359497 Dec  1 11:05 ATLAS.root_0
[2025-12-01 12:43:33] -rw-r--r-- 2 root root    590098 Dec  1 11:05 input.tar.gz
[2025-12-01 12:43:33] -rw-r--r-- 2 root root     15847 Dec  1 11:05 start_atlas.sh
[2025-12-01 12:43:33] -rw------- 1 root root 930271306 Dec  1 12:42 HITS.pool.root.1
[2025-12-01 12:43:33] -rw------- 1 root root   2713600 Dec  1 12:43 result.tar.gz
12:43:34 (363721): run_atlas exited; CPU time 60832.378080
12:43:34 (363721): called boinc_finish(0)

</stderr_txt>
]]>

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