Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:48:41 (14232): wrapper (7.7.26015): starting
16:48:41 (14232): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:48:41] Arguments: --nthreads 8
[2025-11-26 16:48:41] Threads: 8
[2025-11-26 16:48:41] Checking for CVMFS
[2025-11-26 16:48:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:48:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:48:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:48:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:48:42] 2.11.2.0 2857 68196 88456 153335 3 82 10248913 20275201 1 130560 0 18229839 99.856 3822853 29713 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 16:48:42] CVMFS is ok
[2025-11-26 16:48:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:48:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:48:42] Further information can be found at the LHC@home message board.
[2025-11-26 16:48:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:48:42] Checking for apptainer binary...
[2025-11-26 16:48:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:48:42] Running /usr/bin/apptainer --version
[2025-11-26 16:48:42] apptainer version 1.3.2-1.el7
[2025-11-26 16:48:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:48:43] c-204-10.aglt2.org
[2025-11-26 16:48:43] apptainer works
[2025-11-26 16:48:43] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:48:43] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:48:43] Starting ATLAS job with PandaID=6896556859
[2025-11-26 16:48:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:20:41]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:20:41] 2025-11-27 10:20:07,026 | INFO     | PID=17999 has CPU usage=13.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 05:20:41] 2025-11-27 10:20:07,783 | INFO     | monitor loop #3315: job 0:6896556859 is in state 'finished'
[2025-11-27 05:20:41] 2025-11-27 10:20:07,784 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,027 | INFO     | time since job start (45066s) is within the limit (172800.0s)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,728 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 05:20:41] 2025-11-27 10:20:08,731 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.125
[2025-11-27 05:20:41] 2025-11-27 10:20:08,732 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896556859/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,733 | INFO     | extracted standard info from prmon json
[2025-11-27 05:20:41] 2025-11-27 10:20:08,733 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:20:41] 2025-11-27 10:20:08,733 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:20:41] 2025-11-27 10:20:08,744 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:20:41] 2025-11-27 10:20:08,745 | INFO     | sum of square deviations: 124637101944.54912
[2025-11-27 05:20:41] 2025-11-27 10:20:08,757 | INFO     | sum of deviations: 831162770229.199
[2025-11-27 05:20:41] 2025-11-27 10:20:08,757 | INFO     | mean x: 1764216254.0934958
[2025-11-27 05:20:41] 2025-11-27 10:20:08,757 | INFO     | mean y: 2867700.8956639566
[2025-11-27 05:20:41] 2025-11-27 10:20:08,757 | INFO     | intersect: -11762095108.397734
[2025-11-27 05:20:41] 2025-11-27 10:20:08,758 | INFO     | chi2: 5.468185800681404
[2025-11-27 05:20:41] 2025-11-27 10:20:08,759 | INFO     | sum of square deviations: 122121086030.27551
[2025-11-27 05:20:41] 2025-11-27 10:20:08,769 | INFO     | sum of deviations: 1059346812830.1641
[2025-11-27 05:20:41] 2025-11-27 10:20:08,770 | INFO     | mean x: 1764216101.5975444
[2025-11-27 05:20:41] 2025-11-27 10:20:08,770 | INFO     | mean y: 2881525.4242837653
[2025-11-27 05:20:41] 2025-11-27 10:20:08,770 | INFO     | intersect: -15300918703.699827
[2025-11-27 05:20:41] 2025-11-27 10:20:08,771 | INFO     | chi2: 2.6102069930438794
[2025-11-27 05:20:41] 2025-11-27 10:20:08,771 | INFO     | current chi2=2.6102069930438794 (change=52.26557603952274 %)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,772 | INFO     | sum of square deviations: 119639163778.47803
[2025-11-27 05:20:41] 2025-11-27 10:20:08,782 | INFO     | sum of deviations: 1112412968920.4397
[2025-11-27 05:20:41] 2025-11-27 10:20:08,782 | INFO     | mean x: 1764215949.1016483
[2025-11-27 05:20:41] 2025-11-27 10:20:08,783 | INFO     | mean y: 2884778.467032967
[2025-11-27 05:20:41] 2025-11-27 10:20:08,783 | INFO     | intersect: -16400913440.908335
[2025-11-27 05:20:41] 2025-11-27 10:20:08,784 | INFO     | chi2: 2.3306915934409247
[2025-11-27 05:20:41] 2025-11-27 10:20:08,784 | INFO     | current chi2=2.3306915934409247 (change=10.708553013146258 %)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,784 | INFO     | right removable region: 727
[2025-11-27 05:20:41] 2025-11-27 10:20:08,785 | INFO     | sum of square deviations: 122120818850.27538
[2025-11-27 05:20:41] 2025-11-27 10:20:08,796 | INFO     | sum of deviations: 632971334150.1953
[2025-11-27 05:20:41] 2025-11-27 10:20:08,796 | INFO     | mean x: 1764216406.5975444
[2025-11-27 05:20:41] 2025-11-27 10:20:08,796 | INFO     | mean y: 2879692.997271487
[2025-11-27 05:20:41] 2025-11-27 10:20:08,796 | INFO     | intersect: -9141330304.340076
[2025-11-27 05:20:41] 2025-11-27 10:20:08,797 | INFO     | chi2: 3.3146383713664984
[2025-11-27 05:20:41] 2025-11-27 10:20:08,797 | INFO     | current chi2=3.3146383713664984 (change=39.38321607591583 %)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,798 | INFO     | sum of square deviations: 119638673887.67987
[2025-11-27 05:20:41] 2025-11-27 10:20:08,809 | INFO     | sum of deviations: 589785529145.9946
[2025-11-27 05:20:41] 2025-11-27 10:20:08,809 | INFO     | mean x: 1764216559.1002748
[2025-11-27 05:20:41] 2025-11-27 10:20:08,809 | INFO     | mean y: 2882345.0274725277
[2025-11-27 05:20:41] 2025-11-27 10:20:08,809 | INFO     | intersect: -8694216703.512138
[2025-11-27 05:20:41] 2025-11-27 10:20:08,810 | INFO     | chi2: 3.2721615121767016
[2025-11-27 05:20:41] 2025-11-27 10:20:08,810 | INFO     | current chi2=3.2721615121767016 (change=1.2814930146447694 %)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,810 | INFO     | left removable region: 20
[2025-11-27 05:20:41] 2025-11-27 10:20:08,811 | INFO     | sum of square deviations: 109581382390.25458
[2025-11-27 05:20:41] 2025-11-27 10:20:08,821 | INFO     | sum of deviations: 823500122768.5529
[2025-11-27 05:20:41] 2025-11-27 10:20:08,821 | INFO     | mean x: 1764216528.6096182
[2025-11-27 05:20:41] 2025-11-27 10:20:08,822 | INFO     | mean y: 2903062.4186704387
[2025-11-27 05:20:41] 2025-11-27 10:20:08,822 | INFO     | intersect: -13255120300.768393
[2025-11-27 05:20:41] 2025-11-27 10:20:08,822 | INFO     | chi2: 0.10396173294332217
[2025-11-27 05:20:41] 2025-11-27 10:20:08,823 | INFO     | current memory leak: 7.51 B/s (using 707 data points, chi2=0.10)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,823 | INFO     | could have reported an average CPU frequency of 2171 MHz (28 samples)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,823 | INFO     | ..............................
[2025-11-27 05:20:41] 2025-11-27 10:20:08,823 | INFO     | . Timing measurements:
[2025-11-27 05:20:41] 2025-11-27 10:20:08,824 | INFO     | . get job = 0 s
[2025-11-27 05:20:41] 2025-11-27 10:20:08,824 | INFO     | . initial setup = 3 s
[2025-11-27 05:20:41] 2025-11-27 10:20:08,824 | INFO     | . payload setup = 9 s
[2025-11-27 05:20:41] 2025-11-27 10:20:08,824 | INFO     | . stage-in = 0 s
[2025-11-27 05:20:41] 2025-11-27 10:20:08,824 | INFO     | . payload execution = 45022 s
[2025-11-27 05:20:41] 2025-11-27 10:20:08,824 | INFO     | . stage-out = 3 s
[2025-11-27 05:20:41] 2025-11-27 10:20:08,824 | INFO     | . log creation = 0 s
[2025-11-27 05:20:41] 2025-11-27 10:20:08,824 | INFO     | ..............................
[2025-11-27 05:20:41] 2025-11-27 10:20:08,913 | INFO     | 
[2025-11-27 05:20:41] 2025-11-27 10:20:08,913 | INFO     | job summary report
[2025-11-27 05:20:41] 2025-11-27 10:20:08,913 | INFO     | --------------------------------------------------
[2025-11-27 05:20:41] 2025-11-27 10:20:08,914 | INFO     | PanDA job id: 6896556859
[2025-11-27 05:20:41] 2025-11-27 10:20:08,914 | INFO     | task id: 47556161
[2025-11-27 05:20:41] 2025-11-27 10:20:08,914 | INFO     | errors: (none)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,914 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:20:41] 2025-11-27 10:20:08,914 | INFO     | pilot state: finished 
[2025-11-27 05:20:41] 2025-11-27 10:20:08,914 | INFO     | transexitcode: 0
[2025-11-27 05:20:41] 2025-11-27 10:20:08,915 | INFO     | exeerrorcode: 0
[2025-11-27 05:20:41] 2025-11-27 10:20:08,915 | INFO     | exeerrordiag: 
[2025-11-27 05:20:41] 2025-11-27 10:20:08,915 | INFO     | exitcode: 0
[2025-11-27 05:20:41] 2025-11-27 10:20:08,915 | INFO     | exitmsg: OK
[2025-11-27 05:20:41] 2025-11-27 10:20:08,915 | INFO     | cpuconsumptiontime: 348674 s
[2025-11-27 05:20:41] 2025-11-27 10:20:08,915 | INFO     | nevents: 1000
[2025-11-27 05:20:41] 2025-11-27 10:20:08,916 | INFO     | neventsw: 0
[2025-11-27 05:20:41] 2025-11-27 10:20:08,916 | INFO     | pid: 25246
[2025-11-27 05:20:41] 2025-11-27 10:20:08,916 | INFO     | pgrp: 25246
[2025-11-27 05:20:41] 2025-11-27 10:20:08,916 | INFO     | corecount: 8
[2025-11-27 05:20:41] 2025-11-27 10:20:08,916 | INFO     | event service: False
[2025-11-27 05:20:41] 2025-11-27 10:20:08,917 | INFO     | sizes: {0: 2284091, 1: 2284290, 7: 2284552, 12: 2284580, 45034: 2330561, 45039: 2339739, 45048: 2339929}
[2025-11-27 05:20:41] 2025-11-27 10:20:08,917 | INFO     | --------------------------------------------------
[2025-11-27 05:20:41] 2025-11-27 10:20:08,917 | INFO     | 
[2025-11-27 05:20:41] 2025-11-27 10:20:08,917 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 05:20:41] 2025-11-27 10:20:08,945 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,945 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,946 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,946 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,947 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,947 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,947 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,947 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,947 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,948 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,948 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,948 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,948 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:20:41] 2025-11-27 10:20:08,949 | INFO     | job 6896556859 has completed (purged errors)
[2025-11-27 05:20:41] 2025-11-27 10:20:08,949 | INFO     | overall cleanup function is called
[2025-11-27 05:20:41] 2025-11-27 10:20:09,964 | INFO     | --- collectZombieJob: --- 10, [25246]
[2025-11-27 05:20:41] 2025-11-27 10:20:09,965 | INFO     | zombie collector waiting for pid 25246
[2025-11-27 05:20:41] 2025-11-27 10:20:09,965 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:20:41] 2025-11-27 10:20:09,965 | INFO     | collected zombie processes
[2025-11-27 05:20:41] 2025-11-27 10:20:09,965 | INFO     | will attempt to kill all subprocesses of pid=25246
[2025-11-27 05:20:41] 2025-11-27 10:20:10,062 | INFO     | process IDs to be killed: [25246] (in reverse order)
[2025-11-27 05:20:41] 2025-11-27 10:20:10,123 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:20:41] 2025-11-27 10:20:10,124 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:20:41] 2025-11-27 10:20:10,127 | INFO     | did not find any defunct processes belonging to 25246
[2025-11-27 05:20:41] 2025-11-27 10:20:10,131 | INFO     | did not find any defunct processes belonging to 25246
[2025-11-27 05:20:41] 2025-11-27 10:20:10,133 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:20:41] 2025-11-27 10:20:10,134 | INFO     | ready for new job
[2025-11-27 05:20:41] 2025-11-27 10:20:10,134 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:20:41] 2025-11-27 10:20:10,137 | INFO     | ***************************************
[2025-11-27 05:20:41] 2025-11-27 10:20:10,138 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:20:41] 2025-11-27 10:20:10,138 | INFO     | ***************************************
[2025-11-27 05:20:41] 2025-11-27 10:20:10,138 | INFO     | 
[2025-11-27 05:20:41] 2025-11-27 10:20:10,139 | INFO     | architecture information:
[2025-11-27 05:20:41] 2025-11-27 10:20:10,139 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:20:41] 2025-11-27 10:20:10,160 | INFO     | cat /etc/os-release:
[2025-11-27 05:20:41] NAME="CentOS Linux"
[2025-11-27 05:20:41] VERSION="7 (Core)"
[2025-11-27 05:20:41] ID="centos"
[2025-11-27 05:20:41] ID_LIKE="rhel fedora"
[2025-11-27 05:20:41] VERSION_ID="7"
[2025-11-27 05:20:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:20:41] ANSI_COLOR="0;31"
[2025-11-27 05:20:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:20:41] HOME_URL="https://www.centos.org/"
[2025-11-27 05:20:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:20:41] 
[2025-11-27 05:20:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:20:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:20:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:20:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:20:41] 
[2025-11-27 05:20:41] 2025-11-27 10:20:10,161 | INFO     | ***************************************
[2025-11-27 05:20:41] 2025-11-27 10:20:10,664 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 05:20:41] 2025-11-27 10:20:10,686 | INFO     | sufficient remaining disk space (17476616192 B)
[2025-11-27 05:20:41] 2025-11-27 10:20:10,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:20:41] 2025-11-27 10:20:10,687 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:20:41] 2025-11-27 10:20:10,687 | INFO     | update_server=False
[2025-11-27 05:20:41] 2025-11-27 10:20:10,687 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:20:41] 2025-11-27 10:20:10,687 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:20:41] 2025-11-27 10:20:10,688 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:20:41] 2025-11-27 10:20:10,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:20:41] 2025-11-27 10:20:11,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:20:41] 2025-11-27 10:20:11,293 | INFO     | aborting loop
[2025-11-27 05:20:41] 2025-11-27 10:20:11,488 | INFO     | all data control threads have been joined
[2025-11-27 05:20:41] 2025-11-27 10:20:11,574 | INFO     | all job control threads have been joined
[2025-11-27 05:20:41] 2025-11-27 10:20:11,693 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:11,694 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:11,967 | INFO     | all payload control threads have been joined
[2025-11-27 05:20:41] 2025-11-27 10:20:12,083 | INFO     | [job] validate thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:12,108 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:12,119 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:12,298 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:12,371 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:12,494 | INFO     | [data] control thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:12,575 | INFO     | [job] control thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:12,693 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:12,828 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:12,899 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:12,972 | INFO     | [payload] control thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:13,037 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:13,142 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:14,695 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:20:41] 2025-11-27 10:20:16,967 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:20:41] 2025-11-27 10:20:18,897 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140323523794752)>', '<ExcThread(monitor, started 140322931721984)>']
[2025-11-27 05:20:41] 2025-11-27 10:20:23,922 | INFO     | all workflow threads have been joined
[2025-11-27 05:20:41] 2025-11-27 10:20:23,923 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:20:41] 2025-11-27 10:20:23,923 | INFO     | traces error code: 0
[2025-11-27 05:20:41] 2025-11-27 10:20:23,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:20:41] 2025-11-27 10:20:41,257 | INFO     | PID=17999 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 05:20:41] 2025-11-27 10:20:41,258 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:20:41] 2025-11-27 10:20:41,258 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:20:41] 2025-11-27 10:20:41,258 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:20:41] 2025-11-27 10:20:41,258 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:20:41] 2025-11-27 10:20:41,258 | INFO     | [monitor] control thread has ended
[2025-11-27 05:20:41] 2025-11-27 10:20:41,393 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:20:41] 2025-11-27 10:20:41,397 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:20:41] 2025-11-27 10:20:41,402 [wrapper] pilotpid: 17999
[2025-11-27 05:20:41] 2025-11-27 10:20:41,407 [wrapper] Pilot exit status: 0
[2025-11-27 05:20:41] 2025-11-27 10:20:41,425 [wrapper] pandaids: 6896556859
[2025-11-27 05:20:41] 2025-11-27 10:20:41,470 [wrapper] cleanup supervisor_pilot 20411 18000
[2025-11-27 05:20:41] 2025-11-27 10:20:41,476 [wrapper] Test setup, not cleaning
[2025-11-27 05:20:41] 2025-11-27 10:20:41,481 [wrapper] apfmon messages muted
[2025-11-27 05:20:41] 2025-11-27 10:20:41,486 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:20:41] 2025-11-27 10:20:41,492 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:20:41]  *** Error codes and diagnostics ***
[2025-11-27 05:20:41]     "exeErrorCode": 0,
[2025-11-27 05:20:41]     "exeErrorDiag": "",
[2025-11-27 05:20:41]     "pilotErrorCode": 0,
[2025-11-27 05:20:41]     "pilotErrorDiag": "",
[2025-11-27 05:20:41]  *** Listing of results directory ***
[2025-11-27 05:20:41] total 1309044
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-27 05:20:41] -rwx------ 1 boincer umatlas     36292 Nov 24 23:38 runpilot2-wrapper.sh
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 23:38 queuedata.json
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas       100 Nov 26 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:20:41] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 16:48 run_atlas
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas       105 Nov 26 16:48 job.xml
[2025-11-27 05:20:41] -rw-r--r-- 2 boincer umatlas 409696181 Nov 26 16:48 EVNT.47483658._002082.pool.root.1
[2025-11-27 05:20:41] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 16:48 start_atlas.sh
[2025-11-27 05:20:41] drwxrwx--x 2 boincer umatlas      4096 Nov 26 16:48 shared
[2025-11-27 05:20:41] -rw-r--r-- 2 boincer umatlas    590098 Nov 26 16:48 input.tar.gz
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas         0 Nov 26 16:48 boinc_lockfile
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas      2784 Nov 26 16:48 pandaJob.out
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas        57 Nov 26 16:48 setup.sh.local
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas    991538 Nov 26 16:48 agis_schedconf.cvmfs.json
[2025-11-27 05:20:41] drwx------ 5 boincer umatlas      4096 Nov 26 16:49 pilot3
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas       532 Nov 27 05:08 boinc_task_state.xml
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas 910479400 Nov 27 05:19 HITS.47556161._000652.pool.root.1
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas      1062 Nov 27 05:19 memory_monitor_summary.json
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas   1516240 Nov 27 05:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas   1978908 Nov 27 05:19 log.47556161._000652.job.log.tgz.1
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas      8657 Nov 27 05:20 heartbeat.json
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas        95 Nov 27 05:20 pilot_heartbeat.json
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas      5913 Nov 27 05:20 init_data.xml
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 05:20 boinc_mmap_file
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas        29 Nov 27 05:20 wrapper_checkpoint.txt
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas       745 Nov 27 05:20 pilotlog.txt
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas   6204938 Nov 27 05:20 log.47556161._000652.job.log.1
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas       353 Nov 27 05:20 output.list
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas       620 Nov 27 05:20 runtime_log
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas   8202240 Nov 27 05:20 result.tar.gz
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas       668 Nov 27 05:20 34SMDmbzzh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPKJKDmzFG8Ym.diag
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 05:20 runtime_log.err
[2025-11-27 05:20:41] -rw-r--r-- 1 boincer umatlas     21411 Nov 27 05:20 stderr.txt
[2025-11-27 05:20:41] HITS file was successfully produced:
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas 910479400 Nov 27 05:19 shared/HITS.pool.root.1
[2025-11-27 05:20:41]  *** Contents of shared directory: ***
[2025-11-27 05:20:41] total 1297852
[2025-11-27 05:20:41] -rw-r--r-- 2 boincer umatlas 409696181 Nov 26 16:48 ATLAS.root_0
[2025-11-27 05:20:41] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 16:48 start_atlas.sh
[2025-11-27 05:20:41] -rw-r--r-- 2 boincer umatlas    590098 Nov 26 16:48 input.tar.gz
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas 910479400 Nov 27 05:19 HITS.pool.root.1
[2025-11-27 05:20:41] -rw------- 1 boincer umatlas   8202240 Nov 27 05:20 result.tar.gz
05:20:43 (14232): run_atlas exited; CPU time 344757.933158
05:20:43 (14232): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN