Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:31:09 (556980): wrapper (7.7.26015): starting
20:31:09 (556980): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 20:31:09] Arguments: --nthreads 8
[2025-11-26 20:31:09] Threads: 8
[2025-11-26 20:31:09] Checking for CVMFS
[2025-11-26 20:31:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:31:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:31:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:31:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:31:11] 2.13.2.0 2325231 31413 154856 153342 2 459 32871564 40960001 31756 16776704 0 225329555 99.712 185877526 51661 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 20:31:11] CVMFS is ok
[2025-11-26 20:31:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:31:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 20:31:11] Further information can be found at the LHC@home message board.
[2025-11-26 20:31:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:31:11] Checking for apptainer binary...
[2025-11-26 20:31:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:31:11] Running /usr/bin/apptainer --version
[2025-11-26 20:31:11] apptainer version 1.4.4-1.el9
[2025-11-26 20:31:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:31:12] c-208-37.aglt2.org
[2025-11-26 20:31:12] apptainer works
[2025-11-26 20:31:12] Set ATHENA_PROC_NUMBER=8
[2025-11-26 20:31:12] Set ATHENA_CORE_NUMBER=8
[2025-11-26 20:31:12] Starting ATLAS job with PandaID=6896297921
[2025-11-26 20:31:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:36:04]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:36:04] 2025-11-27 15:34:53,004 | INFO     | time since job start (50545s) is within the limit (172800.0s)
[2025-11-27 10:36:04] 2025-11-27 15:34:53,828 | INFO     | monitor loop #2963: job 0:6896297921 is in state 'finished'
[2025-11-27 10:36:04] 2025-11-27 15:34:53,829 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:36:04] 2025-11-27 15:34:55,014 | INFO     | time since job start (50547s) is within the limit (172800.0s)
[2025-11-27 10:36:04] 2025-11-27 15:34:56,353 | INFO     | monitor loop #2964: job 0:6896297921 is in state 'finished'
[2025-11-27 10:36:04] 2025-11-27 15:34:56,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:36:04] 2025-11-27 15:34:57,021 | INFO     | time since job start (50549s) is within the limit (172800.0s)
[2025-11-27 10:36:04] 2025-11-27 15:34:58,862 | INFO     | monitor loop #2965: job 0:6896297921 is in state 'finished'
[2025-11-27 10:36:04] 2025-11-27 15:34:58,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:36:04] 2025-11-27 15:34:59,050 | INFO     | time since job start (50551s) is within the limit (172800.0s)
[2025-11-27 10:36:04] 2025-11-27 15:35:01,056 | INFO     | time since job start (50553s) is within the limit (172800.0s)
[2025-11-27 10:36:04] 2025-11-27 15:35:01,368 | INFO     | monitor loop #2966: job 0:6896297921 is in state 'finished'
[2025-11-27 10:36:04] 2025-11-27 15:35:01,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:36:04] 2025-11-27 15:35:03,267 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 10:36:04] 2025-11-27 15:35:03,271 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3784.97690625
[2025-11-27 10:36:04] 2025-11-27 15:35:03,294 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6896297921/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:36:04] 2025-11-27 15:35:03,295 | INFO     | extracted standard info from prmon json
[2025-11-27 10:36:04] 2025-11-27 15:35:03,295 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:36:04] 2025-11-27 15:35:03,295 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:36:04] 2025-11-27 15:35:03,303 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:36:04] 2025-11-27 15:35:03,303 | INFO     | sum of square deviations: 174729305726.7754
[2025-11-27 10:36:04] 2025-11-27 15:35:03,319 | INFO     | sum of deviations: -383547751119.1122
[2025-11-27 10:36:04] 2025-11-27 15:35:03,319 | INFO     | mean x: 1764232462.6464891
[2025-11-27 10:36:04] 2025-11-27 15:35:03,319 | INFO     | mean y: 2685825.5133171915
[2025-11-27 10:36:04] 2025-11-27 15:35:03,319 | INFO     | intersect: 3875346972.3360505
[2025-11-27 10:36:04] 2025-11-27 15:35:03,320 | INFO     | chi2: 44.68132130488707
[2025-11-27 10:36:04] 2025-11-27 15:35:03,321 | INFO     | sum of square deviations: 171575582676.09756
[2025-11-27 10:36:04] 2025-11-27 15:35:03,335 | INFO     | sum of deviations: -133673754727.97986
[2025-11-27 10:36:04] 2025-11-27 15:35:03,335 | INFO     | mean x: 1764232310.1595614
[2025-11-27 10:36:04] 2025-11-27 15:35:03,335 | INFO     | mean y: 2697902.831912302
[2025-11-27 10:36:04] 2025-11-27 15:35:03,335 | INFO     | intersect: 1377203257.4583461
[2025-11-27 10:36:04] 2025-11-27 15:35:03,335 | INFO     | chi2: 41.09443400651088
[2025-11-27 10:36:04] 2025-11-27 15:35:03,335 | INFO     | current chi2=41.09443400651088 (change=8.027710894896634 %)
[2025-11-27 10:36:04] 2025-11-27 15:35:03,335 | INFO     | right removable region: 820
[2025-11-27 10:36:04] 2025-11-27 15:35:03,336 | INFO     | sum of square deviations: 171574501146.0975
[2025-11-27 10:36:04] 2025-11-27 15:35:03,344 | INFO     | sum of deviations: -702040255830.0217
[2025-11-27 10:36:04] 2025-11-27 15:35:03,344 | INFO     | mean x: 1764232615.1595614
[2025-11-27 10:36:04] 2025-11-27 15:35:03,344 | INFO     | mean y: 2701219.9390986604
[2025-11-27 10:36:04] 2025-11-27 15:35:03,344 | INFO     | intersect: 7221503012.844431
[2025-11-27 10:36:04] 2025-11-27 15:35:03,345 | INFO     | chi2: 40.41356102140534
[2025-11-27 10:36:04] 2025-11-27 15:35:03,345 | INFO     | current chi2=40.41356102140534 (change=9.55155344301543 %)
[2025-11-27 10:36:04] 2025-11-27 15:35:03,345 | INFO     | left removable region: 10
[2025-11-27 10:36:04] 2025-11-27 15:35:03,346 | INFO     | sum of square deviations: 164769318859.60004
[2025-11-27 10:36:04] 2025-11-27 15:35:03,361 | INFO     | sum of deviations: -679764005838.7997
[2025-11-27 10:36:04] 2025-11-27 15:35:03,361 | INFO     | mean x: 1764232584.6888888
[2025-11-27 10:36:04] 2025-11-27 15:35:03,361 | INFO     | mean y: 2729272.711111111
[2025-11-27 10:36:04] 2025-11-27 15:35:03,361 | INFO     | intersect: 7281158395.922755
[2025-11-27 10:36:04] 2025-11-27 15:35:03,362 | INFO     | chi2: 33.12956677189317
[2025-11-27 10:36:04] 2025-11-27 15:35:03,362 | INFO     | current memory leak: -4.13 B/s (using 810 data points, chi2=33.13)
[2025-11-27 10:36:04] 2025-11-27 15:35:03,362 | INFO     | could have reported an average CPU frequency of 3736 MHz (31 samples)
[2025-11-27 10:36:04] 2025-11-27 15:35:03,363 | INFO     | ..............................
[2025-11-27 10:36:04] 2025-11-27 15:35:03,363 | INFO     | . Timing measurements:
[2025-11-27 10:36:04] 2025-11-27 15:35:03,363 | INFO     | . get job = 0 s
[2025-11-27 10:36:04] 2025-11-27 15:35:03,363 | INFO     | . initial setup = 7 s
[2025-11-27 10:36:04] 2025-11-27 15:35:03,363 | INFO     | . payload setup = 53 s
[2025-11-27 10:36:04] 2025-11-27 15:35:03,363 | INFO     | . stage-in = 0 s
[2025-11-27 10:36:04] 2025-11-27 15:35:03,363 | INFO     | . payload execution = 50399 s
[2025-11-27 10:36:04] 2025-11-27 15:35:03,363 | INFO     | . stage-out = 4 s
[2025-11-27 10:36:04] 2025-11-27 15:35:03,363 | INFO     | . log creation = 1 s
[2025-11-27 10:36:04] 2025-11-27 15:35:03,363 | INFO     | ..............................
[2025-11-27 10:36:04] 2025-11-27 15:35:03,387 | INFO     | PID=563150 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 10:36:04] 2025-11-27 15:35:03,387 | INFO     | .. there are 32 such processes running
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | 
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | job summary report
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | --------------------------------------------------
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | PanDA job id: 6896297921
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | task id: 47556149
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | errors: (none)
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | pilot state: finished 
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | transexitcode: 0
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | exeerrorcode: 0
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | exeerrordiag: 
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | exitcode: 0
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | exitmsg: OK
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | cpuconsumptiontime: 146853 s
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | nevents: 1000
[2025-11-27 10:36:04] 2025-11-27 15:35:03,417 | INFO     | neventsw: 0
[2025-11-27 10:36:04] 2025-11-27 15:35:03,418 | INFO     | pid: 575100
[2025-11-27 10:36:04] 2025-11-27 15:35:03,418 | INFO     | pgrp: 575100
[2025-11-27 10:36:04] 2025-11-27 15:35:03,418 | INFO     | corecount: 8
[2025-11-27 10:36:04] 2025-11-27 15:35:03,418 | INFO     | event service: False
[2025-11-27 10:36:04] 2025-11-27 15:35:03,418 | INFO     | sizes: {0: 2283486, 1: 2284342, 2: 2284342, 12: 2284370, 23: 2284398, 32: 2284688, 34: 2284844, 50457: 2332914, 50462: 2341908, 50463: 2341964, 50493: 2342210}
[2025-11-27 10:36:04] 2025-11-27 15:35:03,418 | INFO     | --------------------------------------------------
[2025-11-27 10:36:04] 2025-11-27 15:35:03,418 | INFO     | 
[2025-11-27 10:36:04] 2025-11-27 15:35:03,418 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,510 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,511 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,511 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,511 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:36:04] 2025-11-27 15:35:03,511 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,511 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:36:04] 2025-11-27 15:35:03,511 | INFO     | job 6896297921 has completed (purged errors)
[2025-11-27 10:36:04] 2025-11-27 15:35:03,511 | INFO     | overall cleanup function is called
[2025-11-27 10:36:04] 2025-11-27 15:35:04,563 | INFO     | --- collectZombieJob: --- 10, [575100]
[2025-11-27 10:36:04] 2025-11-27 15:35:04,564 | INFO     | zombie collector waiting for pid 575100
[2025-11-27 10:36:04] 2025-11-27 15:35:04,564 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:36:04] 2025-11-27 15:35:04,564 | INFO     | collected zombie processes
[2025-11-27 10:36:04] 2025-11-27 15:35:04,564 | INFO     | will attempt to kill all subprocesses of pid=575100
[2025-11-27 10:36:04] 2025-11-27 15:35:05,558 | INFO     | process IDs to be killed: [575100] (in reverse order)
[2025-11-27 10:36:04] 2025-11-27 15:35:05,705 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:36:04] 2025-11-27 15:35:05,706 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:36:04] 2025-11-27 15:35:05,728 | INFO     | did not find any defunct processes belonging to 575100
[2025-11-27 10:36:04] 2025-11-27 15:35:05,757 | INFO     | did not find any defunct processes belonging to 575100
[2025-11-27 10:36:04] 2025-11-27 15:35:05,764 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:36:04] 2025-11-27 15:35:05,764 | INFO     | ready for new job
[2025-11-27 10:36:04] 2025-11-27 15:35:05,764 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:36:04] 2025-11-27 15:35:05,767 | INFO     | ***************************************
[2025-11-27 10:36:04] 2025-11-27 15:35:05,767 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:36:04] 2025-11-27 15:35:05,767 | INFO     | ***************************************
[2025-11-27 10:36:04] 2025-11-27 15:35:05,767 | INFO     | 
[2025-11-27 10:36:04] 2025-11-27 15:35:05,780 | INFO     | architecture information:
[2025-11-27 10:36:04] 2025-11-27 15:35:05,793 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:36:04] 2025-11-27 15:35:05,863 | INFO     | cat /etc/os-release:
[2025-11-27 10:36:04] NAME="CentOS Linux"
[2025-11-27 10:36:04] VERSION="7 (Core)"
[2025-11-27 10:36:04] ID="centos"
[2025-11-27 10:36:04] ID_LIKE="rhel fedora"
[2025-11-27 10:36:04] VERSION_ID="7"
[2025-11-27 10:36:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:36:04] ANSI_COLOR="0;31"
[2025-11-27 10:36:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:36:04] HOME_URL="https://www.centos.org/"
[2025-11-27 10:36:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:36:04] 
[2025-11-27 10:36:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:36:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:36:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:36:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:36:04] 
[2025-11-27 10:36:04] 2025-11-27 15:35:05,863 | INFO     | ***************************************
[2025-11-27 10:36:04] 2025-11-27 15:35:06,366 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-27 10:36:04] 2025-11-27 15:35:06,399 | INFO     | sufficient remaining disk space (160496091136 B)
[2025-11-27 10:36:04] 2025-11-27 15:35:06,399 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:36:04] 2025-11-27 15:35:06,399 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:36:04] 2025-11-27 15:35:06,399 | INFO     | update_server=False
[2025-11-27 10:36:04] 2025-11-27 15:35:06,399 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:36:04] 2025-11-27 15:35:06,410 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 10:36:04] 2025-11-27 15:35:06,410 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 10:36:04] 2025-11-27 15:35:06,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:36:04] 2025-11-27 15:35:06,410 | INFO     | will abort loop
[2025-11-27 10:36:04] 2025-11-27 15:35:06,413 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:36:04] 2025-11-27 15:35:06,508 | INFO     | all data control threads have been joined
[2025-11-27 10:36:04] 2025-11-27 15:35:06,525 | INFO     | all payload control threads have been joined
[2025-11-27 10:36:04] 2025-11-27 15:35:07,000 | INFO     | all job control threads have been joined
[2025-11-27 10:36:04] 2025-11-27 15:35:07,073 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:36:04] 2025-11-27 15:35:07,404 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:07,416 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:07,479 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:07,495 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:07,520 | INFO     | [data] control thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:07,532 | INFO     | [payload] control thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:07,544 | INFO     | [job] validate thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:07,597 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:07,703 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:07,730 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:07,951 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:08,006 | INFO     | [job] control thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:08,075 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:08,426 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:08,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:36:04] 2025-11-27 15:35:09,453 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:11,084 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:36:04] 2025-11-27 15:35:36,413 | INFO     | PID=563150 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 10:36:04] 2025-11-27 15:35:36,413 | INFO     | .. there are 32 such processes running
[2025-11-27 10:36:04] 2025-11-27 15:35:36,413 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:36:04] 2025-11-27 15:35:36,413 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:36:04] 2025-11-27 15:35:36,413 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:36:04] 2025-11-27 15:35:57,369 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:36:04] 2025-11-27 15:35:57,372 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140508589315904)>', '<ExcThread(monitor, started 140507967645440)>']
[2025-11-27 10:36:04] 2025-11-27 15:35:57,555 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:36:04] 2025-11-27 15:35:57,556 | INFO     | [monitor] control thread has ended
[2025-11-27 10:36:04] 2025-11-27 15:36:02,397 | INFO     | all workflow threads have been joined
[2025-11-27 10:36:04] 2025-11-27 15:36:02,398 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:36:04] 2025-11-27 15:36:02,398 | INFO     | traces error code: 0
[2025-11-27 10:36:04] 2025-11-27 15:36:02,398 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:36:04] 2025-11-27 15:36:03,068 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:36:04] 2025-11-27 15:36:03,090 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:36:04] 2025-11-27 15:36:03,133 [wrapper] pilotpid: 563150
[2025-11-27 10:36:04] 2025-11-27 15:36:03,176 [wrapper] Pilot exit status: 0
[2025-11-27 10:36:04] 2025-11-27 15:36:03,333 [wrapper] pandaids: 6896297921
[2025-11-27 10:36:04] 2025-11-27 15:36:03,642 [wrapper] cleanup supervisor_pilot 3981502 563151
[2025-11-27 10:36:04] 2025-11-27 15:36:03,664 [wrapper] Test setup, not cleaning
[2025-11-27 10:36:04] 2025-11-27 15:36:03,707 [wrapper] apfmon messages muted
[2025-11-27 10:36:04] 2025-11-27 15:36:03,725 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:36:04] 2025-11-27 15:36:03,761 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:36:04]  *** Error codes and diagnostics ***
[2025-11-27 10:36:04]     "exeErrorCode": 0,
[2025-11-27 10:36:04]     "exeErrorDiag": "",
[2025-11-27 10:36:04]     "pilotErrorCode": 0,
[2025-11-27 10:36:04]     "pilotErrorDiag": "",
[2025-11-27 10:36:04]  *** Listing of results directory ***
[2025-11-27 10:36:04] total 1328552
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 20:13 pilot3.tar.gz
[2025-11-27 10:36:04] -rwx------. 1 boincer umatlas     36292 Nov 24 20:53 runpilot2-wrapper.sh
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 20:53 queuedata.json
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas       100 Nov 26 20:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:36:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 20:31 run_atlas
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas       105 Nov 26 20:31 job.xml
[2025-11-27 10:36:04] -rw-r--r--. 2 boincer umatlas 412154698 Nov 26 20:31 EVNT.47483658._001476.pool.root.1
[2025-11-27 10:36:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 20:31 shared
[2025-11-27 10:36:04] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 20:31 input.tar.gz
[2025-11-27 10:36:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 20:31 start_atlas.sh
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas         0 Nov 26 20:31 boinc_lockfile
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 20:31 pandaJob.out
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas        57 Nov 26 20:31 setup.sh.local
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas    991530 Nov 26 20:32 agis_schedconf.cvmfs.json
[2025-11-27 10:36:04] drwx------. 5 boincer umatlas      4096 Nov 26 20:32 pilot3
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas       533 Nov 27 09:39 boinc_task_state.xml
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 10:30 init_data.xml
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas 927792401 Nov 27 10:33 HITS.47556149._004625.pool.root.1
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas      1068 Nov 27 10:34 memory_monitor_summary.json
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:34 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas   1996794 Nov 27 10:34 log.47556149._004625.job.log.tgz.1
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas        95 Nov 27 10:34 pilot_heartbeat.json
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas      8618 Nov 27 10:35 heartbeat.json
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:36 boinc_mmap_file
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas        29 Nov 27 10:36 wrapper_checkpoint.txt
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas      5010 Nov 27 10:36 pilotlog.txt
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas   6291260 Nov 27 10:36 log.47556149._004625.job.log.1
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas       353 Nov 27 10:36 output.list
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:36 runtime_log
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas   8304640 Nov 27 10:36 result.tar.gz
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 10:36 runtime_log.err
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas       665 Nov 27 10:36 G2nMDm7Pxh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNHJKDmxA885n.diag
[2025-11-27 10:36:04] -rw-r--r--. 1 boincer umatlas     21848 Nov 27 10:36 stderr.txt
[2025-11-27 10:36:04] HITS file was successfully produced:
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas 927792401 Nov 27 10:33 shared/HITS.pool.root.1
[2025-11-27 10:36:04]  *** Contents of shared directory: ***
[2025-11-27 10:36:04] total 1317256
[2025-11-27 10:36:04] -rw-r--r--. 2 boincer umatlas 412154698 Nov 26 20:31 ATLAS.root_0
[2025-11-27 10:36:04] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 20:31 input.tar.gz
[2025-11-27 10:36:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 20:31 start_atlas.sh
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas 927792401 Nov 27 10:33 HITS.pool.root.1
[2025-11-27 10:36:04] -rw-------. 1 boincer umatlas   8304640 Nov 27 10:36 result.tar.gz
10:36:06 (556980): run_atlas exited; CPU time 147376.349621
10:36:06 (556980): called boinc_finish(0)

</stderr_txt>
]]>

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