Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:56:46 (634468): wrapper (7.7.26015): starting
17:56:46 (634468): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:56:46] Arguments: --nthreads 8
[2025-11-26 17:56:46] Threads: 8
[2025-11-26 17:56:46] Checking for CVMFS
[2025-11-26 17:56:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:56:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:56:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:56:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:56:48] 2.13.3.0 11235 28983 308976 153337 2 1251 31950440 32935937 62286 16776704 0 204891107 99.550 229077802 34150 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 17:56:48] CVMFS is ok
[2025-11-26 17:56:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:56:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:56:48] Further information can be found at the LHC@home message board.
[2025-11-26 17:56:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:56:48] Checking for apptainer binary...
[2025-11-26 17:56:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:56:48] Running /usr/bin/apptainer --version
[2025-11-26 17:56:48] apptainer version 1.4.4-1.el9
[2025-11-26 17:56:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:56:49] c7-2-37.aglt2.org
[2025-11-26 17:56:49] apptainer works
[2025-11-26 17:56:49] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:56:49] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:56:49] Starting ATLAS job with PandaID=6896923340
[2025-11-26 17:56:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:00:39]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:00:39] 2025-11-27 11:59:53,155 | INFO     | monitor loop #2629: job 0:6896923340 is in state 'finished'
[2025-11-27 07:00:39] 2025-11-27 11:59:53,155 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,052 | INFO     | time since job start (46966s) is within the limit (172800.0s)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,250 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 07:00:39] 2025-11-27 11:59:55,266 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3318.3035729166654
[2025-11-27 07:00:39] 2025-11-27 11:59:55,293 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6896923340/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,294 | INFO     | extracted standard info from prmon json
[2025-11-27 07:00:39] 2025-11-27 11:59:55,294 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:00:39] 2025-11-27 11:59:55,294 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:00:39] 2025-11-27 11:59:55,304 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:00:39] 2025-11-27 11:59:55,305 | INFO     | sum of square deviations: 141015269608.65836
[2025-11-27 07:00:39] 2025-11-27 11:59:55,316 | INFO     | sum of deviations: 3809434338768.3677
[2025-11-27 07:00:39] 2025-11-27 11:59:55,316 | INFO     | mean x: 1764221305.6423926
[2025-11-27 07:00:39] 2025-11-27 11:59:55,316 | INFO     | mean y: 3089786.234070221
[2025-11-27 07:00:39] 2025-11-27 11:59:55,316 | INFO     | intersect: -47656183153.157196
[2025-11-27 07:00:39] 2025-11-27 11:59:55,317 | INFO     | chi2: 8.778113249729667
[2025-11-27 07:00:39] 2025-11-27 11:59:55,318 | INFO     | sum of square deviations: 138282699271.58087
[2025-11-27 07:00:39] 2025-11-27 11:59:55,329 | INFO     | sum of deviations: 4097625270784.4746
[2025-11-27 07:00:39] 2025-11-27 11:59:55,329 | INFO     | mean x: 1764221153.146597
[2025-11-27 07:00:39] 2025-11-27 11:59:55,329 | INFO     | mean y: 3105874.4332460733
[2025-11-27 07:00:39] 2025-11-27 11:59:55,330 | INFO     | intersect: -52274707752.768
[2025-11-27 07:00:39] 2025-11-27 11:59:55,330 | INFO     | chi2: 5.2800777880304155
[2025-11-27 07:00:39] 2025-11-27 11:59:55,330 | INFO     | current chi2=5.2800777880304155 (change=39.849513923814754 %)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,331 | INFO     | sum of square deviations: 135585571643.07486
[2025-11-27 07:00:39] 2025-11-27 11:59:55,342 | INFO     | sum of deviations: 4116665224230.1816
[2025-11-27 07:00:39] 2025-11-27 11:59:55,342 | INFO     | mean x: 1764221000.6482213
[2025-11-27 07:00:39] 2025-11-27 11:59:55,342 | INFO     | mean y: 3106934.727272727
[2025-11-27 07:00:39] 2025-11-27 11:59:55,342 | INFO     | intersect: -53562380551.97946
[2025-11-27 07:00:39] 2025-11-27 11:59:55,343 | INFO     | chi2: 4.886342876669746
[2025-11-27 07:00:39] 2025-11-27 11:59:55,343 | INFO     | current chi2=4.886342876669746 (change=7.456990733228223 %)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,343 | INFO     | right removable region: 758
[2025-11-27 07:00:39] 2025-11-27 11:59:55,344 | INFO     | sum of square deviations: 138282397931.58072
[2025-11-27 07:00:39] 2025-11-27 11:59:55,355 | INFO     | sum of deviations: 3510721054483.8774
[2025-11-27 07:00:39] 2025-11-27 11:59:55,355 | INFO     | mean x: 1764221458.146597
[2025-11-27 07:00:39] 2025-11-27 11:59:55,356 | INFO     | mean y: 3106447.8939790577
[2025-11-27 07:00:39] 2025-11-27 11:59:55,356 | INFO     | intersect: -44787044074.025764
[2025-11-27 07:00:39] 2025-11-27 11:59:55,356 | INFO     | chi2: 5.604146637396053
[2025-11-27 07:00:39] 2025-11-27 11:59:55,356 | INFO     | current chi2=5.604146637396053 (change=36.15773141718535 %)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,357 | INFO     | sum of square deviations: 135585108408.77734
[2025-11-27 07:00:39] 2025-11-27 11:59:55,368 | INFO     | sum of deviations: 3407517572973.8115
[2025-11-27 07:00:39] 2025-11-27 11:59:55,368 | INFO     | mean x: 1764221610.6495388
[2025-11-27 07:00:39] 2025-11-27 11:59:55,368 | INFO     | mean y: 3112275.1910408433
[2025-11-27 07:00:39] 2025-11-27 11:59:55,369 | INFO     | intersect: -44335209325.614586
[2025-11-27 07:00:39] 2025-11-27 11:59:55,370 | INFO     | chi2: 5.405230966086875
[2025-11-27 07:00:39] 2025-11-27 11:59:55,370 | INFO     | current chi2=5.405230966086875 (change=3.549437303831933 %)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,370 | INFO     | left removable region: 20
[2025-11-27 07:00:39] 2025-11-27 11:59:55,371 | INFO     | sum of square deviations: 124639761251.13298
[2025-11-27 07:00:39] 2025-11-27 11:59:55,381 | INFO     | sum of deviations: 3553780169360.6304
[2025-11-27 07:00:39] 2025-11-27 11:59:55,381 | INFO     | mean x: 1764221580.1598916
[2025-11-27 07:00:39] 2025-11-27 11:59:55,381 | INFO     | mean y: 3138115.325203252
[2025-11-27 07:00:39] 2025-11-27 11:59:55,381 | INFO     | intersect: -50299073658.79521
[2025-11-27 07:00:39] 2025-11-27 11:59:55,382 | INFO     | chi2: 1.4384814193452222
[2025-11-27 07:00:39] 2025-11-27 11:59:55,382 | INFO     | current memory leak: 28.51 B/s (using 738 data points, chi2=1.44)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,383 | INFO     | could have reported an average CPU frequency of 3359 MHz (29 samples)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,383 | INFO     | ..............................
[2025-11-27 07:00:39] 2025-11-27 11:59:55,383 | INFO     | . Timing measurements:
[2025-11-27 07:00:39] 2025-11-27 11:59:55,383 | INFO     | . get job = 0 s
[2025-11-27 07:00:39] 2025-11-27 11:59:55,383 | INFO     | . initial setup = 3 s
[2025-11-27 07:00:39] 2025-11-27 11:59:55,383 | INFO     | . payload setup = 19 s
[2025-11-27 07:00:39] 2025-11-27 11:59:55,383 | INFO     | . stage-in = 0 s
[2025-11-27 07:00:39] 2025-11-27 11:59:55,384 | INFO     | . payload execution = 46904 s
[2025-11-27 07:00:39] 2025-11-27 11:59:55,384 | INFO     | . stage-out = 3 s
[2025-11-27 07:00:39] 2025-11-27 11:59:55,384 | INFO     | . log creation = 1 s
[2025-11-27 07:00:39] 2025-11-27 11:59:55,384 | INFO     | ..............................
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | 
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | job summary report
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | --------------------------------------------------
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | PanDA job id: 6896923340
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | task id: 47556161
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | errors: (none)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | pilot state: finished 
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | transexitcode: 0
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | exeerrorcode: 0
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | exeerrordiag: 
[2025-11-27 07:00:39] 2025-11-27 11:59:55,458 | INFO     | exitcode: 0
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | exitmsg: OK
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | cpuconsumptiontime: 196943 s
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | nevents: 1000
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | neventsw: 0
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | pid: 656764
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | pgrp: 656764
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | corecount: 8
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | event service: False
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | sizes: {0: 2284213, 10: 2284475, 11: 2284503, 46927: 2330825, 46931: 2339819, 46935: 2339875, 46946: 2340249}
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | --------------------------------------------------
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | 
[2025-11-27 07:00:39] 2025-11-27 11:59:55,459 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 07:00:39] 2025-11-27 11:59:55,483 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,484 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,484 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,484 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,486 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,486 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,487 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,488 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:00:39] 2025-11-27 11:59:55,488 | INFO     | job 6896923340 has completed (purged errors)
[2025-11-27 07:00:39] 2025-11-27 11:59:55,488 | INFO     | overall cleanup function is called
[2025-11-27 07:00:39] 2025-11-27 11:59:56,507 | INFO     | --- collectZombieJob: --- 10, [656764]
[2025-11-27 07:00:39] 2025-11-27 11:59:56,507 | INFO     | zombie collector waiting for pid 656764
[2025-11-27 07:00:39] 2025-11-27 11:59:56,507 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:00:39] 2025-11-27 11:59:56,507 | INFO     | collected zombie processes
[2025-11-27 07:00:39] 2025-11-27 11:59:56,507 | INFO     | will attempt to kill all subprocesses of pid=656764
[2025-11-27 07:00:39] 2025-11-27 11:59:57,388 | INFO     | process IDs to be killed: [656764] (in reverse order)
[2025-11-27 07:00:39] 2025-11-27 11:59:57,662 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:00:39] 2025-11-27 11:59:57,663 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:00:39] 2025-11-27 11:59:57,707 | INFO     | did not find any defunct processes belonging to 656764
[2025-11-27 07:00:39] 2025-11-27 11:59:57,746 | INFO     | did not find any defunct processes belonging to 656764
[2025-11-27 07:00:39] 2025-11-27 11:59:57,750 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:00:39] 2025-11-27 11:59:57,751 | INFO     | ready for new job
[2025-11-27 07:00:39] 2025-11-27 11:59:57,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:00:39] 2025-11-27 11:59:57,760 | INFO     | ***************************************
[2025-11-27 07:00:39] 2025-11-27 11:59:57,760 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:00:39] 2025-11-27 11:59:57,760 | INFO     | ***************************************
[2025-11-27 07:00:39] 2025-11-27 11:59:57,760 | INFO     | 
[2025-11-27 07:00:39] 2025-11-27 11:59:57,767 | INFO     | architecture information:
[2025-11-27 07:00:39] 2025-11-27 11:59:57,789 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:00:39] 2025-11-27 11:59:57,901 | INFO     | cat /etc/os-release:
[2025-11-27 07:00:39] NAME="CentOS Linux"
[2025-11-27 07:00:39] VERSION="7 (Core)"
[2025-11-27 07:00:39] ID="centos"
[2025-11-27 07:00:39] ID_LIKE="rhel fedora"
[2025-11-27 07:00:39] VERSION_ID="7"
[2025-11-27 07:00:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:00:39] ANSI_COLOR="0;31"
[2025-11-27 07:00:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:00:39] HOME_URL="https://www.centos.org/"
[2025-11-27 07:00:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:00:39] 
[2025-11-27 07:00:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:00:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:00:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:00:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:00:39] 
[2025-11-27 07:00:39] 2025-11-27 11:59:57,901 | INFO     | ***************************************
[2025-11-27 07:00:39] 2025-11-27 11:59:58,405 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 07:00:39] 2025-11-27 11:59:58,498 | INFO     | sufficient remaining disk space (64421363712 B)
[2025-11-27 07:00:39] 2025-11-27 11:59:58,498 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:00:39] 2025-11-27 11:59:58,499 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:00:39] 2025-11-27 11:59:58,499 | INFO     | update_server=False
[2025-11-27 07:00:39] 2025-11-27 11:59:58,499 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:00:39] 2025-11-27 11:59:58,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:00:39] 2025-11-27 11:59:58,607 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:00:39] 2025-11-27 11:59:58,996 | INFO     | all data control threads have been joined
[2025-11-27 07:00:39] 2025-11-27 11:59:58,997 | INFO     | all payload control threads have been joined
[2025-11-27 07:00:39] 2025-11-27 11:59:59,183 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:00:39] 2025-11-27 11:59:59,183 | INFO     | aborting loop
[2025-11-27 07:00:39] 2025-11-27 11:59:59,345 | INFO     | all job control threads have been joined
[2025-11-27 07:00:39] 2025-11-27 11:59:59,507 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:00:39] 2025-11-27 11:59:59,509 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:00:39] 2025-11-27 11:59:59,865 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:00,002 | INFO     | [data] control thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:00,003 | INFO     | [payload] control thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:00,189 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:00,359 | INFO     | [job] control thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:00,478 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:00:39] 2025-11-27 12:00:00,509 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:00,632 | INFO     | [job] validate thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:00,777 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:00,827 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:00,827 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:00,853 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:01,005 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:01,492 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:02,630 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:00:39] 2025-11-27 12:00:29,346 | INFO     | PID=646260 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 07:00:39] 2025-11-27 12:00:29,346 | INFO     | .. there are 90 such processes running
[2025-11-27 07:00:39] 2025-11-27 12:00:29,346 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:00:39] 2025-11-27 12:00:29,346 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:00:39] 2025-11-27 12:00:29,346 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:00:39] 2025-11-27 12:00:32,792 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:00:39] 2025-11-27 12:00:33,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140024065984320)>', '<ExcThread(monitor, started 140023399683840)>']
[2025-11-27 07:00:39] 2025-11-27 12:00:34,373 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:00:39] 2025-11-27 12:00:34,373 | INFO     | [monitor] control thread has ended
[2025-11-27 07:00:39] 2025-11-27 12:00:38,545 | INFO     | all workflow threads have been joined
[2025-11-27 07:00:39] 2025-11-27 12:00:38,549 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:00:39] 2025-11-27 12:00:38,549 | INFO     | traces error code: 0
[2025-11-27 07:00:39] 2025-11-27 12:00:38,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:00:39] 2025-11-27 12:00:38,741 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:00:39] 2025-11-27 12:00:38,747 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:00:39] 2025-11-27 12:00:38,752 [wrapper] pilotpid: 646260
[2025-11-27 07:00:39] 2025-11-27 12:00:38,756 [wrapper] Pilot exit status: 0
[2025-11-27 07:00:39] 2025-11-27 12:00:38,780 [wrapper] pandaids: 6896923340
[2025-11-27 07:00:39] 2025-11-27 12:00:38,994 [wrapper] cleanup supervisor_pilot 1456421 646261
[2025-11-27 07:00:39] 2025-11-27 12:00:39,016 [wrapper] Test setup, not cleaning
[2025-11-27 07:00:39] 2025-11-27 12:00:39,059 [wrapper] apfmon messages muted
[2025-11-27 07:00:39] 2025-11-27 12:00:39,064 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:00:39] 2025-11-27 12:00:39,079 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:00:39]  *** Error codes and diagnostics ***
[2025-11-27 07:00:39]     "exeErrorCode": 0,
[2025-11-27 07:00:39]     "exeErrorDiag": "",
[2025-11-27 07:00:39]     "pilotErrorCode": 0,
[2025-11-27 07:00:39]     "pilotErrorDiag": "",
[2025-11-27 07:00:39]  *** Listing of results directory ***
[2025-11-27 07:00:39] total 1330484
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 06:31 queuedata.json
[2025-11-27 07:00:39] -rwx------. 1 boincer umatlas     36292 Nov 25 06:31 runpilot2-wrapper.sh
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas       100 Nov 26 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:00:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 17:56 run_atlas
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas       105 Nov 26 17:56 job.xml
[2025-11-27 07:00:39] -rw-r--r--. 2 boincer umatlas 412255950 Nov 26 17:56 EVNT.47483658._002148.pool.root.1
[2025-11-27 07:00:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 17:56 start_atlas.sh
[2025-11-27 07:00:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 17:56 shared
[2025-11-27 07:00:39] -rw-r--r--. 2 boincer umatlas    611284 Nov 26 17:56 input.tar.gz
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas         0 Nov 26 17:56 boinc_lockfile
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 17:56 pandaJob.out
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas        57 Nov 26 17:56 setup.sh.local
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas    991546 Nov 26 17:57 agis_schedconf.cvmfs.json
[2025-11-27 07:00:39] drwx------. 7 boincer umatlas      4096 Nov 26 17:57 pilot3
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas       532 Nov 27 06:51 boinc_task_state.xml
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas      6946 Nov 27 06:56 init_data.xml
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas 930846983 Nov 27 06:59 HITS.47556161._001318.pool.root.1
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas        95 Nov 27 06:59 pilot_heartbeat.json
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas      1076 Nov 27 06:59 memory_monitor_summary.json
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas   1516240 Nov 27 06:59 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas   1968699 Nov 27 06:59 log.47556161._001318.job.log.tgz.1
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas      8636 Nov 27 06:59 heartbeat.json
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 07:00 boinc_mmap_file
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas        29 Nov 27 07:00 wrapper_checkpoint.txt
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas      4823 Nov 27 07:00 pilotlog.txt
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas   5701688 Nov 27 07:00 log.47556161._001318.job.log.1
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas       353 Nov 27 07:00 output.list
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas       620 Nov 27 07:00 runtime_log
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas   7690240 Nov 27 07:00 result.tar.gz
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 07:00 runtime_log.err
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas       665 Nov 27 07:00 EtkKDmbR6h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCSJKDmQ6IYRn.diag
[2025-11-27 07:00:39] -rw-r--r--. 1 boincer umatlas     21324 Nov 27 07:00 stderr.txt
[2025-11-27 07:00:39] HITS file was successfully produced:
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas 930846983 Nov 27 06:59 shared/HITS.pool.root.1
[2025-11-27 07:00:39]  *** Contents of shared directory: ***
[2025-11-27 07:00:39] total 1319764
[2025-11-27 07:00:39] -rw-r--r--. 2 boincer umatlas 412255950 Nov 26 17:56 ATLAS.root_0
[2025-11-27 07:00:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 17:56 start_atlas.sh
[2025-11-27 07:00:39] -rw-r--r--. 2 boincer umatlas    611284 Nov 26 17:56 input.tar.gz
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas 930846983 Nov 27 06:59 HITS.pool.root.1
[2025-11-27 07:00:39] -rw-------. 1 boincer umatlas   7690240 Nov 27 07:00 result.tar.gz
07:00:40 (634468): run_atlas exited; CPU time 197641.827727
07:00:40 (634468): called boinc_finish(0)

</stderr_txt>
]]>

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