Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:57:49 (2977576): wrapper (7.7.26015): starting
16:57:49 (2977576): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:57:49] Arguments: --nthreads 8
[2025-11-26 16:57:49] Threads: 8
[2025-11-26 16:57:49] Checking for CVMFS
[2025-11-26 16:57:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:57:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:57:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:57:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:57:50] 2.13.3.0 12846 30573 277268 153335 2 944 30696965 32935434 37332 16776704 0 161944926 99.494 202885601 38217 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:57:50] CVMFS is ok
[2025-11-26 16:57:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:57:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:57:50] Further information can be found at the LHC@home message board.
[2025-11-26 16:57:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:57:50] Checking for apptainer binary...
[2025-11-26 16:57:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:57:50] Running /usr/bin/apptainer --version
[2025-11-26 16:57:50] apptainer version 1.4.4-1.el9
[2025-11-26 16:57:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:57:50] c7-16-9.aglt2.org
[2025-11-26 16:57:50] apptainer works
[2025-11-26 16:57:50] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:57:50] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:57:50] Starting ATLAS job with PandaID=6895346079
[2025-11-26 16:57:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:12:28]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:12:28] 2025-11-27 10:11:23,211 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 05:12:28] 2025-11-27 10:11:23,232 | INFO     | executing command: lscpu
[2025-11-27 05:12:28] 2025-11-27 10:11:23,380 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 05:12:28] 2025-11-27 10:11:23,713 | INFO     | monitor loop #2850: job 0:6895346079 is in state 'finished'
[2025-11-27 05:12:28] 2025-11-27 10:11:23,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:12:28] 2025-11-27 10:11:25,123 | INFO     | time since job start (44000s) is within the limit (172800.0s)
[2025-11-27 05:12:28] 2025-11-27 10:11:26,218 | INFO     | monitor loop #2851: job 0:6895346079 is in state 'finished'
[2025-11-27 05:12:28] 2025-11-27 10:11:26,218 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:12:28] 2025-11-27 10:11:27,130 | INFO     | time since job start (44002s) is within the limit (172800.0s)
[2025-11-27 05:12:28] 2025-11-27 10:11:28,755 | INFO     | monitor loop #2852: job 0:6895346079 is in state 'finished'
[2025-11-27 05:12:28] 2025-11-27 10:11:28,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:12:28] 2025-11-27 10:11:29,137 | INFO     | time since job start (44004s) is within the limit (172800.0s)
[2025-11-27 05:12:28] 2025-11-27 10:11:31,144 | INFO     | time since job start (44006s) is within the limit (172800.0s)
[2025-11-27 05:12:28] 2025-11-27 10:11:31,265 | INFO     | monitor loop #2853: job 0:6895346079 is in state 'finished'
[2025-11-27 05:12:28] 2025-11-27 10:11:31,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:12:28] 2025-11-27 10:11:32,902 | INFO     | PID=2984917 has CPU usage=17.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 05:12:28] 2025-11-27 10:11:32,902 | INFO     | .. there are 54 such processes running
[2025-11-27 05:12:28] 2025-11-27 10:11:33,312 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:12:28] 2025-11-27 10:11:33,317 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3081.991062500001
[2025-11-27 05:12:28] 2025-11-27 10:11:33,338 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895346079/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:12:28] 2025-11-27 10:11:33,338 | INFO     | extracted standard info from prmon json
[2025-11-27 05:12:28] 2025-11-27 10:11:33,339 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:12:28] 2025-11-27 10:11:33,339 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:12:28] 2025-11-27 10:11:33,385 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:12:28] 2025-11-27 10:11:33,385 | INFO     | sum of square deviations: 116218215272.47986
[2025-11-27 05:12:28] 2025-11-27 10:11:33,397 | INFO     | sum of deviations: 11659985040241.68
[2025-11-27 05:12:28] 2025-11-27 10:11:33,407 | INFO     | mean x: 1764216296.3037448
[2025-11-27 05:12:28] 2025-11-27 10:11:33,407 | INFO     | mean y: 4241388.563106796
[2025-11-27 05:12:28] 2025-11-27 10:11:33,407 | INFO     | intersect: -176996718180.66663
[2025-11-27 05:12:28] 2025-11-27 10:11:33,408 | INFO     | chi2: 42.10788260888134
[2025-11-27 05:12:28] 2025-11-27 10:11:33,409 | INFO     | sum of square deviations: 113817322058.92148
[2025-11-27 05:12:28] 2025-11-27 10:11:33,461 | INFO     | sum of deviations: 12053049738276.291
[2025-11-27 05:12:28] 2025-11-27 10:11:33,461 | INFO     | mean x: 1764216143.812849
[2025-11-27 05:12:28] 2025-11-27 10:11:33,461 | INFO     | mean y: 4266349.643854748
[2025-11-27 05:12:28] 2025-11-27 10:11:33,461 | INFO     | intersect: -186823050844.11447
[2025-11-27 05:12:28] 2025-11-27 10:11:33,462 | INFO     | chi2: 37.344959100886136
[2025-11-27 05:12:28] 2025-11-27 10:11:33,462 | INFO     | current chi2=37.344959100886136 (change=11.311239637090216 %)
[2025-11-27 05:12:28] 2025-11-27 10:11:33,462 | INFO     | right removable region: 715
[2025-11-27 05:12:28] 2025-11-27 10:11:33,463 | INFO     | sum of square deviations: 113816748658.92117
[2025-11-27 05:12:28] 2025-11-27 10:11:33,495 | INFO     | sum of deviations: 11277270967573.303
[2025-11-27 05:12:28] 2025-11-27 10:11:33,495 | INFO     | mean x: 1764216448.812849
[2025-11-27 05:12:28] 2025-11-27 10:11:33,495 | INFO     | mean y: 4265680.793296089
[2025-11-27 05:12:28] 2025-11-27 10:11:33,495 | INFO     | intersect: -174799066633.1013
[2025-11-27 05:12:28] 2025-11-27 10:11:33,496 | INFO     | chi2: 39.74841352822459
[2025-11-27 05:12:28] 2025-11-27 10:11:33,496 | INFO     | current chi2=39.74841352822459 (change=5.603390468650863 %)
[2025-11-27 05:12:28] 2025-11-27 10:11:33,496 | INFO     | left removable region: 10
[2025-11-27 05:12:28] 2025-11-27 10:11:33,497 | INFO     | sum of square deviations: 108651498061.55179
[2025-11-27 05:12:28] 2025-11-27 10:11:33,505 | INFO     | sum of deviations: 11537886628749.475
[2025-11-27 05:12:28] 2025-11-27 10:11:33,505 | INFO     | mean x: 1764216418.3205674
[2025-11-27 05:12:28] 2025-11-27 10:11:33,505 | INFO     | mean y: 4309588.312056738
[2025-11-27 05:12:28] 2025-11-27 10:11:33,506 | INFO     | intersect: -187340820357.61597
[2025-11-27 05:12:28] 2025-11-27 10:11:33,506 | INFO     | chi2: 33.955044216932315
[2025-11-27 05:12:28] 2025-11-27 10:11:33,506 | INFO     | current memory leak: 106.19 B/s (using 705 data points, chi2=33.96)
[2025-11-27 05:12:28] 2025-11-27 10:11:33,507 | INFO     | could have reported an average CPU frequency of 3101 MHz (28 samples)
[2025-11-27 05:12:28] 2025-11-27 10:11:33,507 | INFO     | ..............................
[2025-11-27 05:12:28] 2025-11-27 10:11:33,507 | INFO     | . Timing measurements:
[2025-11-27 05:12:28] 2025-11-27 10:11:33,507 | INFO     | . get job = 0 s
[2025-11-27 05:12:28] 2025-11-27 10:11:33,507 | INFO     | . initial setup = 2 s
[2025-11-27 05:12:28] 2025-11-27 10:11:33,507 | INFO     | . payload setup = 14 s
[2025-11-27 05:12:28] 2025-11-27 10:11:33,507 | INFO     | . stage-in = 0 s
[2025-11-27 05:12:28] 2025-11-27 10:11:33,508 | INFO     | . payload execution = 43944 s
[2025-11-27 05:12:28] 2025-11-27 10:11:33,508 | INFO     | . stage-out = 5 s
[2025-11-27 05:12:28] 2025-11-27 10:11:33,508 | INFO     | . log creation = 1 s
[2025-11-27 05:12:28] 2025-11-27 10:11:33,508 | INFO     | ..............................
[2025-11-27 05:12:28] 2025-11-27 10:11:33,652 | INFO     | 
[2025-11-27 05:12:28] 2025-11-27 10:11:33,672 | INFO     | job summary report
[2025-11-27 05:12:28] 2025-11-27 10:11:33,672 | INFO     | --------------------------------------------------
[2025-11-27 05:12:28] 2025-11-27 10:11:33,672 | INFO     | PanDA job id: 6895346079
[2025-11-27 05:12:28] 2025-11-27 10:11:33,672 | INFO     | task id: 47556137
[2025-11-27 05:12:28] 2025-11-27 10:11:33,672 | INFO     | errors: (none)
[2025-11-27 05:12:28] 2025-11-27 10:11:33,672 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | pilot state: finished 
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | transexitcode: 0
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | exeerrorcode: 0
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | exeerrordiag: 
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | exitcode: 0
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | exitmsg: OK
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | cpuconsumptiontime: 208736 s
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | nevents: 1000
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | neventsw: 0
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | pid: 3003637
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | pgrp: 3003637
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | corecount: 8
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | event service: False
[2025-11-27 05:12:28] 2025-11-27 10:11:33,673 | INFO     | sizes: {0: 2284264, 1: 2284264, 8: 2284554, 11: 2284582, 43963: 2330937, 43970: 2339931, 43973: 2340115, 43985: 2340361}
[2025-11-27 05:12:28] 2025-11-27 10:11:33,674 | INFO     | --------------------------------------------------
[2025-11-27 05:12:28] 2025-11-27 10:11:33,674 | INFO     | 
[2025-11-27 05:12:28] 2025-11-27 10:11:33,674 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 05:12:28] 2025-11-27 10:11:33,700 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,700 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:12:28] 2025-11-27 10:11:33,701 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:12:28] 2025-11-27 10:11:33,702 | INFO     | job 6895346079 has completed (purged errors)
[2025-11-27 05:12:28] 2025-11-27 10:11:33,702 | INFO     | overall cleanup function is called
[2025-11-27 05:12:28] 2025-11-27 10:11:34,723 | INFO     | --- collectZombieJob: --- 10, [3003637]
[2025-11-27 05:12:28] 2025-11-27 10:11:34,723 | INFO     | zombie collector waiting for pid 3003637
[2025-11-27 05:12:28] 2025-11-27 10:11:34,723 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:12:28] 2025-11-27 10:11:34,723 | INFO     | collected zombie processes
[2025-11-27 05:12:28] 2025-11-27 10:11:34,723 | INFO     | will attempt to kill all subprocesses of pid=3003637
[2025-11-27 05:12:28] 2025-11-27 10:11:36,420 | INFO     | process IDs to be killed: [3003637] (in reverse order)
[2025-11-27 05:12:28] 2025-11-27 10:11:36,945 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:12:28] 2025-11-27 10:11:36,946 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:12:28] 2025-11-27 10:11:36,975 | INFO     | did not find any defunct processes belonging to 3003637
[2025-11-27 05:12:28] 2025-11-27 10:11:36,999 | INFO     | did not find any defunct processes belonging to 3003637
[2025-11-27 05:12:28] 2025-11-27 10:11:37,001 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:12:28] 2025-11-27 10:11:37,001 | INFO     | ready for new job
[2025-11-27 05:12:28] 2025-11-27 10:11:37,001 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:12:28] 2025-11-27 10:11:37,004 | INFO     | ***************************************
[2025-11-27 05:12:28] 2025-11-27 10:11:37,004 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:12:28] 2025-11-27 10:11:37,004 | INFO     | ***************************************
[2025-11-27 05:12:28] 2025-11-27 10:11:37,004 | INFO     | 
[2025-11-27 05:12:28] 2025-11-27 10:11:37,009 | INFO     | architecture information:
[2025-11-27 05:12:28] 2025-11-27 10:11:37,010 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:12:28] 2025-11-27 10:11:37,060 | INFO     | cat /etc/os-release:
[2025-11-27 05:12:28] NAME="CentOS Linux"
[2025-11-27 05:12:28] VERSION="7 (Core)"
[2025-11-27 05:12:28] ID="centos"
[2025-11-27 05:12:28] ID_LIKE="rhel fedora"
[2025-11-27 05:12:28] VERSION_ID="7"
[2025-11-27 05:12:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:12:28] ANSI_COLOR="0;31"
[2025-11-27 05:12:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:12:28] HOME_URL="https://www.centos.org/"
[2025-11-27 05:12:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:12:28] 
[2025-11-27 05:12:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:12:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:12:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:12:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:12:28] 
[2025-11-27 05:12:28] 2025-11-27 10:11:37,060 | INFO     | ***************************************
[2025-11-27 05:12:28] 2025-11-27 10:11:37,566 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 05:12:28] 2025-11-27 10:11:37,621 | INFO     | sufficient remaining disk space (67534585856 B)
[2025-11-27 05:12:28] 2025-11-27 10:11:37,621 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:12:28] 2025-11-27 10:11:37,622 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:12:28] 2025-11-27 10:11:37,622 | INFO     | update_server=False
[2025-11-27 05:12:28] 2025-11-27 10:11:37,622 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:12:28] 2025-11-27 10:11:37,623 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:12:28] 2025-11-27 10:11:37,623 | INFO     | aborting loop
[2025-11-27 05:12:28] 2025-11-27 10:11:37,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:12:28] 2025-11-27 10:11:37,629 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:12:28] 2025-11-27 10:11:37,797 | INFO     | all data control threads have been joined
[2025-11-27 05:12:28] 2025-11-27 10:11:38,217 | INFO     | all payload control threads have been joined
[2025-11-27 05:12:28] 2025-11-27 10:11:38,501 | INFO     | all job control threads have been joined
[2025-11-27 05:12:28] 2025-11-27 10:11:38,629 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:38,632 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:38,675 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:12:28] 2025-11-27 10:11:38,782 | INFO     | [job] validate thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:38,847 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:38,866 | INFO     | [data] control thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:38,948 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:39,091 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:39,230 | INFO     | [payload] control thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:39,361 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:39,507 | INFO     | [job] control thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:39,596 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:39,635 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:39,684 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:39,866 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:39,966 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:11:41,637 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:12:28] 2025-11-27 10:12:05,846 | INFO     | PID=2984917 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:12:28] 2025-11-27 10:12:05,846 | INFO     | .. there are 54 such processes running
[2025-11-27 05:12:28] 2025-11-27 10:12:05,847 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:12:28] 2025-11-27 10:12:05,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:12:28] 2025-11-27 10:12:05,847 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:12:28] 2025-11-27 10:12:21,018 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:12:28] 2025-11-27 10:12:22,028 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781297583936)>', '<ExcThread(monitor, started 139780935358208)>']
[2025-11-27 05:12:28] 2025-11-27 10:12:22,948 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:12:28] 2025-11-27 10:12:22,948 | INFO     | [monitor] control thread has ended
[2025-11-27 05:12:28] 2025-11-27 10:12:27,064 | INFO     | all workflow threads have been joined
[2025-11-27 05:12:28] 2025-11-27 10:12:27,064 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:12:28] 2025-11-27 10:12:27,092 | INFO     | traces error code: 0
[2025-11-27 05:12:28] 2025-11-27 10:12:27,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:12:28] 2025-11-27 10:12:27,666 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:12:28] 2025-11-27 10:12:27,690 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:12:28] 2025-11-27 10:12:27,724 [wrapper] pilotpid: 2984917
[2025-11-27 05:12:28] 2025-11-27 10:12:27,744 [wrapper] Pilot exit status: 0
[2025-11-27 05:12:28] 2025-11-27 10:12:27,807 [wrapper] pandaids: 6895346079
[2025-11-27 05:12:28] 2025-11-27 10:12:28,003 [wrapper] cleanup supervisor_pilot 2842137 2984918
[2025-11-27 05:12:28] 2025-11-27 10:12:28,006 [wrapper] Test setup, not cleaning
[2025-11-27 05:12:28] 2025-11-27 10:12:28,010 [wrapper] apfmon messages muted
[2025-11-27 05:12:28] 2025-11-27 10:12:28,018 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:12:28] 2025-11-27 10:12:28,021 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:12:28]  *** Error codes and diagnostics ***
[2025-11-27 05:12:28]     "exeErrorCode": 0,
[2025-11-27 05:12:28]     "exeErrorDiag": "",
[2025-11-27 05:12:28]     "pilotErrorCode": 0,
[2025-11-27 05:12:28]     "pilotErrorDiag": "",
[2025-11-27 05:12:28]  *** Listing of results directory ***
[2025-11-27 05:12:28] total 1324460
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 12:43 pilot3.tar.gz
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 12:49 queuedata.json
[2025-11-27 05:12:28] -rwx------. 1 boincer umatlas     36292 Nov 22 12:49 runpilot2-wrapper.sh
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:12:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:57 run_atlas
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:57 job.xml
[2025-11-27 05:12:28] -rw-r--r--. 2 boincer umatlas 410614716 Nov 26 16:57 EVNT.47483658._000454.pool.root.1
[2025-11-27 05:12:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:57 start_atlas.sh
[2025-11-27 05:12:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:57 shared
[2025-11-27 05:12:28] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 16:57 input.tar.gz
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:57 boinc_lockfile
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 16:57 pandaJob.out
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas        57 Nov 26 16:57 setup.sh.local
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas    991538 Nov 26 16:58 agis_schedconf.cvmfs.json
[2025-11-27 05:12:28] drwx------. 5 boincer umatlas      4096 Nov 26 16:58 pilot3
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas       532 Nov 27 04:41 boinc_task_state.xml
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 05:09 init_data.xml
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas 926099754 Nov 27 05:10 HITS.47556137._004493.pool.root.1
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas      1074 Nov 27 05:11 memory_monitor_summary.json
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas   1516240 Nov 27 05:11 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas   1963386 Nov 27 05:11 log.47556137._004493.job.log.tgz.1
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas        95 Nov 27 05:11 pilot_heartbeat.json
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas      8641 Nov 27 05:11 heartbeat.json
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 05:12 boinc_mmap_file
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas        29 Nov 27 05:12 wrapper_checkpoint.txt
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas      4824 Nov 27 05:12 pilotlog.txt
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas   5842751 Nov 27 05:12 log.47556137._004493.job.log.1
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas       353 Nov 27 05:12 output.list
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas       620 Nov 27 05:12 runtime_log
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas   7823360 Nov 27 05:12 result.tar.gz
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 05:12 runtime_log.err
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas       665 Nov 27 05:12 pvNODmou6g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzJKKDmGV4NQm.diag
[2025-11-27 05:12:28] -rw-r--r--. 1 boincer umatlas     21889 Nov 27 05:12 stderr.txt
[2025-11-27 05:12:28] HITS file was successfully produced:
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas 926099754 Nov 27 05:10 shared/HITS.pool.root.1
[2025-11-27 05:12:28]  *** Contents of shared directory: ***
[2025-11-27 05:12:28] total 1313632
[2025-11-27 05:12:28] -rw-r--r--. 2 boincer umatlas 410614716 Nov 26 16:57 ATLAS.root_0
[2025-11-27 05:12:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:57 start_atlas.sh
[2025-11-27 05:12:28] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 16:57 input.tar.gz
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas 926099754 Nov 27 05:10 HITS.pool.root.1
[2025-11-27 05:12:28] -rw-------. 1 boincer umatlas   7823360 Nov 27 05:12 result.tar.gz
05:12:29 (2977576): run_atlas exited; CPU time 209374.151825
05:12:29 (2977576): called boinc_finish(0)

</stderr_txt>
]]>

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