Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:48:23 (1160372): wrapper (7.7.26015): starting
16:48:23 (1160372): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:48:23] Arguments: --nthreads 8
[2025-11-26 16:48:23] Threads: 8
[2025-11-26 16:48:23] Checking for CVMFS
[2025-11-26 16:48:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:48:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:48:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:48:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:48:25] 2.13.3.0 10121 30562 443300 153335 2 1008 30934067 32935936 63658 16776704 0 344407014 99.785 178872580 27441 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:48:25] CVMFS is ok
[2025-11-26 16:48:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:48:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:48:25] Further information can be found at the LHC@home message board.
[2025-11-26 16:48:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:48:25] Checking for apptainer binary...
[2025-11-26 16:48:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:48:25] Running /usr/bin/apptainer --version
[2025-11-26 16:48:25] apptainer version 1.4.4-1.el9
[2025-11-26 16:48:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:48:26] lc-10-11.aglt2.org
[2025-11-26 16:48:26] apptainer works
[2025-11-26 16:48:26] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:48:26] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:48:26] Starting ATLAS job with PandaID=6896577498
[2025-11-26 16:48:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:53:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:53:05] 2025-11-27 20:51:49,622 | INFO     | monitor loop #4288: job 0:6896577498 is in state 'finished'
[2025-11-27 15:53:05] 2025-11-27 20:51:49,623 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:53:05] 2025-11-27 20:51:52,234 | INFO     | monitor loop #4289: job 0:6896577498 is in state 'finished'
[2025-11-27 15:53:05] 2025-11-27 20:51:52,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:53:05] 2025-11-27 20:51:53,450 | INFO     | PID=1165569 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:53:05] 2025-11-27 20:51:53,450 | INFO     | .. there are 95 such processes running
[2025-11-27 15:53:05] 2025-11-27 20:51:54,451 | INFO     | time since job start (82948s) is within the limit (172800.0s)
[2025-11-27 15:53:05] 2025-11-27 20:51:54,752 | INFO     | monitor loop #4290: job 0:6896577498 is in state 'finished'
[2025-11-27 15:53:05] 2025-11-27 20:51:54,753 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:53:05] 2025-11-27 20:51:56,458 | INFO     | time since job start (82950s) is within the limit (172800.0s)
[2025-11-27 15:53:05] 2025-11-27 20:51:57,296 | INFO     | monitor loop #4291: job 0:6896577498 is in state 'finished'
[2025-11-27 15:53:05] 2025-11-27 20:51:57,297 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:53:05] 2025-11-27 20:51:58,465 | INFO     | time since job start (82952s) is within the limit (172800.0s)
[2025-11-27 15:53:05] 2025-11-27 20:51:59,801 | INFO     | monitor loop #4292: job 0:6896577498 is in state 'finished'
[2025-11-27 15:53:05] 2025-11-27 20:51:59,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:53:05] 2025-11-27 20:52:00,478 | INFO     | time since job start (82954s) is within the limit (172800.0s)
[2025-11-27 15:53:05] 2025-11-27 20:52:00,478 | INFO     | 82961s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 15:53:05] 2025-11-27 20:52:01,357 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 15:53:05] 2025-11-27 20:52:01,379 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2718.057958333334
[2025-11-27 15:53:05] 2025-11-27 20:52:01,413 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896577498/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:53:05] 2025-11-27 20:52:01,414 | INFO     | extracted standard info from prmon json
[2025-11-27 15:53:05] 2025-11-27 20:52:01,414 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:53:05] 2025-11-27 20:52:01,414 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:53:05] 2025-11-27 20:52:01,449 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:53:05] 2025-11-27 20:52:01,451 | INFO     | sum of square deviations: 773149463851.4391
[2025-11-27 15:53:05] 2025-11-27 20:52:01,487 | INFO     | sum of deviations: 4528358071927.375
[2025-11-27 15:53:05] 2025-11-27 20:52:01,487 | INFO     | mean x: 1764235289.4660766
[2025-11-27 15:53:05] 2025-11-27 20:52:01,487 | INFO     | mean y: 2911386.366519174
[2025-11-27 15:53:05] 2025-11-27 20:52:01,487 | INFO     | intersect: -10330264134.489746
[2025-11-27 15:53:05] 2025-11-27 20:52:01,489 | INFO     | chi2: 19.543774798536983
[2025-11-27 15:53:05] 2025-11-27 20:52:01,491 | INFO     | sum of square deviations: 764629354407.0415
[2025-11-27 15:53:05] 2025-11-27 20:52:01,552 | INFO     | sum of deviations: 4980993950715.622
[2025-11-27 15:53:05] 2025-11-27 20:52:01,552 | INFO     | mean x: 1764235136.9733531
[2025-11-27 15:53:05] 2025-11-27 20:52:01,552 | INFO     | mean y: 2919486.2672094745
[2025-11-27 15:53:05] 2025-11-27 20:52:01,552 | INFO     | intersect: -11489765818.391155
[2025-11-27 15:53:05] 2025-11-27 20:52:01,554 | INFO     | chi2: 16.46229176980031
[2025-11-27 15:53:05] 2025-11-27 20:52:01,554 | INFO     | current chi2=16.46229176980031 (change=15.76708215532318 %)
[2025-11-27 15:53:05] 2025-11-27 20:52:01,554 | INFO     | right removable region: 1350
[2025-11-27 15:53:05] 2025-11-27 20:52:01,556 | INFO     | sum of square deviations: 764627728147.041
[2025-11-27 15:53:05] 2025-11-27 20:52:01,628 | INFO     | sum of deviations: 3959341685895.5728
[2025-11-27 15:53:05] 2025-11-27 20:52:01,629 | INFO     | mean x: 1764235441.9733531
[2025-11-27 15:53:05] 2025-11-27 20:52:01,629 | INFO     | mean y: 2921568.5714285714
[2025-11-27 15:53:05] 2025-11-27 20:52:01,629 | INFO     | intersect: -9132518688.175594
[2025-11-27 15:53:05] 2025-11-27 20:52:01,634 | INFO     | chi2: 15.018737241690696
[2025-11-27 15:53:05] 2025-11-27 20:52:01,635 | INFO     | current chi2=15.018737241690696 (change=23.153344752954403 %)
[2025-11-27 15:53:05] 2025-11-27 20:52:01,635 | INFO     | left removable region: 10
[2025-11-27 15:53:05] 2025-11-27 20:52:01,636 | INFO     | sum of square deviations: 746102724784.853
[2025-11-27 15:53:05] 2025-11-27 20:52:01,769 | INFO     | sum of deviations: 3997007047666.4507
[2025-11-27 15:53:05] 2025-11-27 20:52:01,769 | INFO     | mean x: 1764235411.4895523
[2025-11-27 15:53:05] 2025-11-27 20:52:01,769 | INFO     | mean y: 2940640.7828358207
[2025-11-27 15:53:05] 2025-11-27 20:52:01,769 | INFO     | intersect: -9448387090.931166
[2025-11-27 15:53:05] 2025-11-27 20:52:01,771 | INFO     | chi2: 7.753974817345366
[2025-11-27 15:53:05] 2025-11-27 20:52:01,771 | INFO     | current memory leak: 5.36 B/s (using 1340 data points, chi2=7.75)
[2025-11-27 15:53:05] 2025-11-27 20:52:01,790 | INFO     | could have reported an average CPU frequency of 2710 MHz (48 samples)
[2025-11-27 15:53:05] 2025-11-27 20:52:01,790 | INFO     | ..............................
[2025-11-27 15:53:05] 2025-11-27 20:52:01,790 | INFO     | . Timing measurements:
[2025-11-27 15:53:05] 2025-11-27 20:52:01,790 | INFO     | . get job = 0 s
[2025-11-27 15:53:05] 2025-11-27 20:52:01,790 | INFO     | . initial setup = 6 s
[2025-11-27 15:53:05] 2025-11-27 20:52:01,791 | INFO     | . payload setup = 78 s
[2025-11-27 15:53:05] 2025-11-27 20:52:01,791 | INFO     | . stage-in = 0 s
[2025-11-27 15:53:05] 2025-11-27 20:52:01,792 | INFO     | . payload execution = 82736 s
[2025-11-27 15:53:05] 2025-11-27 20:52:01,792 | INFO     | . stage-out = 11 s
[2025-11-27 15:53:05] 2025-11-27 20:52:01,792 | INFO     | . log creation = 3 s
[2025-11-27 15:53:05] 2025-11-27 20:52:01,792 | INFO     | ..............................
[2025-11-27 15:53:05] 2025-11-27 20:52:02,064 | INFO     | 
[2025-11-27 15:53:05] 2025-11-27 20:52:02,065 | INFO     | job summary report
[2025-11-27 15:53:05] 2025-11-27 20:52:02,065 | INFO     | --------------------------------------------------
[2025-11-27 15:53:05] 2025-11-27 20:52:02,065 | INFO     | PanDA job id: 6896577498
[2025-11-27 15:53:05] 2025-11-27 20:52:02,065 | INFO     | task id: 47556161
[2025-11-27 15:53:05] 2025-11-27 20:52:02,065 | INFO     | errors: (none)
[2025-11-27 15:53:05] 2025-11-27 20:52:02,065 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:53:05] 2025-11-27 20:52:02,065 | INFO     | pilot state: finished 
[2025-11-27 15:53:05] 2025-11-27 20:52:02,065 | INFO     | transexitcode: 0
[2025-11-27 15:53:05] 2025-11-27 20:52:02,065 | INFO     | exeerrorcode: 0
[2025-11-27 15:53:05] 2025-11-27 20:52:02,066 | INFO     | exeerrordiag: 
[2025-11-27 15:53:05] 2025-11-27 20:52:02,066 | INFO     | exitcode: 0
[2025-11-27 15:53:05] 2025-11-27 20:52:02,066 | INFO     | exitmsg: OK
[2025-11-27 15:53:05] 2025-11-27 20:52:02,066 | INFO     | cpuconsumptiontime: 260468 s
[2025-11-27 15:53:05] 2025-11-27 20:52:02,068 | INFO     | nevents: 1000
[2025-11-27 15:53:05] 2025-11-27 20:52:02,068 | INFO     | neventsw: 0
[2025-11-27 15:53:05] 2025-11-27 20:52:02,068 | INFO     | pid: 1192226
[2025-11-27 15:53:05] 2025-11-27 20:52:02,068 | INFO     | pgrp: 1192226
[2025-11-27 15:53:05] 2025-11-27 20:52:02,068 | INFO     | corecount: 8
[2025-11-27 15:53:05] 2025-11-27 20:52:02,069 | INFO     | event service: False
[2025-11-27 15:53:05] 2025-11-27 20:52:02,069 | INFO     | sizes: {0: 2283984, 1: 2284068, 2: 2284267, 13: 2284267, 24: 2284323, 35: 2284351, 42: 2284769, 47: 2284825, 82819: 2347459, 82820: 2347458, 82833: 2356508, 82835:
[2025-11-27 15:53:05] 2025-11-27 20:52:02,069 | INFO     | --------------------------------------------------
[2025-11-27 15:53:05] 2025-11-27 20:52:02,069 | INFO     | 
[2025-11-27 15:53:05] 2025-11-27 20:52:02,069 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 15:53:05] 2025-11-27 20:52:02,126 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,126 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,126 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,126 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,126 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,127 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:53:05] 2025-11-27 20:52:02,128 | INFO     | job 6896577498 has completed (purged errors)
[2025-11-27 15:53:05] 2025-11-27 20:52:02,128 | INFO     | overall cleanup function is called
[2025-11-27 15:53:05] 2025-11-27 20:52:03,149 | INFO     | --- collectZombieJob: --- 10, [1192226]
[2025-11-27 15:53:05] 2025-11-27 20:52:03,150 | INFO     | zombie collector waiting for pid 1192226
[2025-11-27 15:53:05] 2025-11-27 20:52:03,150 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:53:05] 2025-11-27 20:52:03,150 | INFO     | collected zombie processes
[2025-11-27 15:53:05] 2025-11-27 20:52:03,150 | INFO     | will attempt to kill all subprocesses of pid=1192226
[2025-11-27 15:53:05] 2025-11-27 20:52:04,924 | INFO     | process IDs to be killed: [1192226] (in reverse order)
[2025-11-27 15:53:05] 2025-11-27 20:52:05,315 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:53:05] 2025-11-27 20:52:05,316 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:53:05] 2025-11-27 20:52:05,623 | INFO     | did not find any defunct processes belonging to 1192226
[2025-11-27 15:53:05] 2025-11-27 20:52:05,773 | INFO     | did not find any defunct processes belonging to 1192226
[2025-11-27 15:53:05] 2025-11-27 20:52:05,811 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:53:05] 2025-11-27 20:52:05,811 | INFO     | ready for new job
[2025-11-27 15:53:05] 2025-11-27 20:52:05,811 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:53:05] 2025-11-27 20:52:05,821 | INFO     | ***************************************
[2025-11-27 15:53:05] 2025-11-27 20:52:05,821 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:53:05] 2025-11-27 20:52:05,821 | INFO     | ***************************************
[2025-11-27 15:53:05] 2025-11-27 20:52:05,821 | INFO     | 
[2025-11-27 15:53:05] 2025-11-27 20:52:05,835 | INFO     | architecture information:
[2025-11-27 15:53:05] 2025-11-27 20:52:05,840 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:53:05] 2025-11-27 20:52:05,891 | INFO     | cat /etc/os-release:
[2025-11-27 15:53:05] NAME="CentOS Linux"
[2025-11-27 15:53:05] VERSION="7 (Core)"
[2025-11-27 15:53:05] ID="centos"
[2025-11-27 15:53:05] ID_LIKE="rhel fedora"
[2025-11-27 15:53:05] VERSION_ID="7"
[2025-11-27 15:53:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:53:05] ANSI_COLOR="0;31"
[2025-11-27 15:53:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:53:05] HOME_URL="https://www.centos.org/"
[2025-11-27 15:53:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:53:05] 
[2025-11-27 15:53:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:53:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:53:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:53:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:53:05] 
[2025-11-27 15:53:05] 2025-11-27 20:52:05,891 | INFO     | ***************************************
[2025-11-27 15:53:05] 2025-11-27 20:52:06,395 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 15:53:05] 2025-11-27 20:52:06,436 | INFO     | sufficient remaining disk space (87091576832 B)
[2025-11-27 15:53:05] 2025-11-27 20:52:06,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:53:05] 2025-11-27 20:52:06,437 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:53:05] 2025-11-27 20:52:06,437 | INFO     | update_server=False
[2025-11-27 15:53:05] 2025-11-27 20:52:06,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:53:05] 2025-11-27 20:52:06,437 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:53:05] 2025-11-27 20:52:06,437 | INFO     | aborting loop
[2025-11-27 15:53:05] 2025-11-27 20:52:06,795 | INFO     | all payload control threads have been joined
[2025-11-27 15:53:05] 2025-11-27 20:52:06,833 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:53:05] 2025-11-27 20:52:06,834 | INFO     | all data control threads have been joined
[2025-11-27 15:53:05] 2025-11-27 20:52:06,942 | INFO     | all job control threads have been joined
[2025-11-27 15:53:05] 2025-11-27 20:52:07,081 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:53:05] 2025-11-27 20:52:07,446 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:07,446 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:07,548 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:07,681 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:07,682 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:07,801 | INFO     | [payload] control thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:07,841 | INFO     | [data] control thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:07,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:53:05] 2025-11-27 20:52:07,949 | INFO     | [job] control thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:08,087 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:08,454 | INFO     | [job] validate thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:08,533 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:08,553 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:08,616 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:08,617 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:09,872 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:10,848 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:53:05] 2025-11-27 20:52:36,612 | INFO     | PID=1165569 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:53:05] 2025-11-27 20:52:36,614 | INFO     | .. there are 95 such processes running
[2025-11-27 15:53:05] 2025-11-27 20:52:36,639 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:53:05] 2025-11-27 20:52:36,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:53:05] 2025-11-27 20:52:36,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:53:05] 2025-11-27 20:52:58,471 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:53:05] 2025-11-27 20:52:59,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140408935393088)>', '<ExcThread(monitor, started 140408420022016)>']
[2025-11-27 15:53:05] 2025-11-27 20:52:59,850 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:53:05] 2025-11-27 20:52:59,851 | INFO     | [monitor] control thread has ended
[2025-11-27 15:53:05] 2025-11-27 20:53:04,154 | INFO     | all workflow threads have been joined
[2025-11-27 15:53:05] 2025-11-27 20:53:04,159 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:53:05] 2025-11-27 20:53:04,159 | INFO     | traces error code: 0
[2025-11-27 15:53:05] 2025-11-27 20:53:04,160 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:53:05] 2025-11-27 20:53:04,694 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:53:05] 2025-11-27 20:53:04,726 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:53:05] 2025-11-27 20:53:04,750 [wrapper] pilotpid: 1165569
[2025-11-27 15:53:05] 2025-11-27 20:53:04,763 [wrapper] Pilot exit status: 0
[2025-11-27 15:53:05] 2025-11-27 20:53:04,825 [wrapper] pandaids: 6896577498
[2025-11-27 15:53:05] 2025-11-27 20:53:05,023 [wrapper] cleanup supervisor_pilot 3135089 1165570
[2025-11-27 15:53:05] 2025-11-27 20:53:05,040 [wrapper] Test setup, not cleaning
[2025-11-27 15:53:05] 2025-11-27 20:53:05,053 [wrapper] apfmon messages muted
[2025-11-27 15:53:05] 2025-11-27 20:53:05,073 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:53:05] 2025-11-27 20:53:05,093 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:53:05]  *** Error codes and diagnostics ***
[2025-11-27 15:53:05]     "exeErrorCode": 0,
[2025-11-27 15:53:05]     "exeErrorDiag": "",
[2025-11-27 15:53:05]     "pilotErrorCode": 0,
[2025-11-27 15:53:05]     "pilotErrorDiag": "",
[2025-11-27 15:53:05]  *** Listing of results directory ***
[2025-11-27 15:53:05] total 1317612
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:11 queuedata.json
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-27 15:53:05] -rwx------. 1 boincer umatlas     36292 Nov 25 00:14 runpilot2-wrapper.sh
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:53:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:48 run_atlas
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:48 job.xml
[2025-11-27 15:53:05] -rw-r--r--. 2 boincer umatlas 408937340 Nov 26 16:48 EVNT.47483658._002092.pool.root.1
[2025-11-27 15:53:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:48 start_atlas.sh
[2025-11-27 15:53:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:48 shared
[2025-11-27 15:53:05] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 16:48 input.tar.gz
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:48 boinc_lockfile
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 16:48 pandaJob.out
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas        57 Nov 26 16:48 setup.sh.local
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas    991538 Nov 26 16:49 agis_schedconf.cvmfs.json
[2025-11-27 15:53:05] drwx------. 5 boincer umatlas      4096 Nov 26 16:49 pilot3
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas       533 Nov 27 15:31 boinc_task_state.xml
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas      6887 Nov 27 15:46 init_data.xml
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas 912514999 Nov 27 15:49 HITS.47556161._000754.pool.root.1
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas      1059 Nov 27 15:51 memory_monitor_summary.json
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:51 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas   2344290 Nov 27 15:51 log.47556161._000754.job.log.tgz.1
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas      8632 Nov 27 15:52 heartbeat.json
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas        95 Nov 27 15:52 pilot_heartbeat.json
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:53 wrapper_checkpoint.txt
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas      4824 Nov 27 15:53 pilotlog.txt
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas   9581487 Nov 27 15:53 log.47556161._000754.job.log.1
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas       353 Nov 27 15:53 output.list
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:53 runtime_log
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas  11950080 Nov 27 15:53 result.tar.gz
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas       660 Nov 27 15:53 VT3NDmdY0h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm68LKDmlWhNYo.diag
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 15:53 runtime_log.err
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:53 boinc_mmap_file
[2025-11-27 15:53:05] -rw-r--r--. 1 boincer umatlas     21915 Nov 27 15:53 stderr.txt
[2025-11-27 15:53:05] HITS file was successfully produced:
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas 912514999 Nov 27 15:49 shared/HITS.pool.root.1
[2025-11-27 15:53:05]  *** Contents of shared directory: ***
[2025-11-27 15:53:05] total 1302760
[2025-11-27 15:53:05] -rw-r--r--. 2 boincer umatlas 408937340 Nov 26 16:48 ATLAS.root_0
[2025-11-27 15:53:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 16:48 start_atlas.sh
[2025-11-27 15:53:05] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 16:48 input.tar.gz
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas 912514999 Nov 27 15:49 HITS.pool.root.1
[2025-11-27 15:53:05] -rw-------. 1 boincer umatlas  11950080 Nov 27 15:53 result.tar.gz
15:53:06 (1160372): run_atlas exited; CPU time 265195.874096
15:53:06 (1160372): called boinc_finish(0)

</stderr_txt>
]]>

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