Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:28:26 (2722484): wrapper (7.7.26015): starting
17:28:26 (2722484): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:28:26] Arguments: --nthreads 8
[2025-11-26 17:28:26] Threads: 8
[2025-11-26 17:28:26] Checking for CVMFS
[2025-11-26 17:28:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:28:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:28:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:28:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:28:28] 2.13.3.0 11314 30651 236356 153337 3 689 26182577 32935937 54172 16776704 0 243849103 99.660 231825284 33760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 17:28:28] CVMFS is ok
[2025-11-26 17:28:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:28:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:28:28] Further information can be found at the LHC@home message board.
[2025-11-26 17:28:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:28:28] Checking for apptainer binary...
[2025-11-26 17:28:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:28:28] Running /usr/bin/apptainer --version
[2025-11-26 17:28:28] apptainer version 1.4.4-1.el9
[2025-11-26 17:28:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:28:29] c7-2-10.aglt2.org
[2025-11-26 17:28:29] apptainer works
[2025-11-26 17:28:29] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:28:29] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:28:29] Starting ATLAS job with PandaID=6896451273
[2025-11-26 17:28:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:45:32]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:45:32] 2025-11-27 07:44:31,410 | INFO     | PID=2742145 has CPU usage=18.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 02:45:32] 2025-11-27 07:44:31,410 | INFO     | .. there are 85 such processes running
[2025-11-27 02:45:32] 2025-11-27 07:44:32,163 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:45:32] 2025-11-27 07:44:32,184 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3398.4555000000005
[2025-11-27 02:45:32] 2025-11-27 07:44:32,211 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896451273/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:45:32] 2025-11-27 07:44:32,212 | INFO     | extracted standard info from prmon json
[2025-11-27 02:45:32] 2025-11-27 07:44:32,212 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:45:32] 2025-11-27 07:44:32,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:45:32] 2025-11-27 07:44:32,218 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:45:32] 2025-11-27 07:44:32,219 | INFO     | sum of square deviations: 49920131718.44107
[2025-11-27 02:45:32] 2025-11-27 07:44:32,224 | INFO     | sum of deviations: 706053103336.4335
[2025-11-27 02:45:32] 2025-11-27 07:44:32,225 | INFO     | mean x: 1764212840.4191177
[2025-11-27 02:45:32] 2025-11-27 07:44:32,225 | INFO     | mean y: 2826653.362132353
[2025-11-27 02:45:32] 2025-11-27 07:44:32,225 | INFO     | intersect: -24949590498.689426
[2025-11-27 02:45:32] 2025-11-27 07:44:32,225 | INFO     | chi2: 13.154790296542107
[2025-11-27 02:45:32] 2025-11-27 07:44:32,226 | INFO     | sum of square deviations: 48556426084.17781
[2025-11-27 02:45:32] 2025-11-27 07:44:32,231 | INFO     | sum of deviations: 885491957433.2789
[2025-11-27 02:45:32] 2025-11-27 07:44:32,231 | INFO     | mean x: 1764212687.9276438
[2025-11-27 02:45:32] 2025-11-27 07:44:32,231 | INFO     | mean y: 2846731.699443414
[2025-11-27 02:45:32] 2025-11-27 07:44:32,231 | INFO     | intersect: -32169952470.067173
[2025-11-27 02:45:32] 2025-11-27 07:44:32,231 | INFO     | chi2: 10.072675442419055
[2025-11-27 02:45:32] 2025-11-27 07:44:32,231 | INFO     | current chi2=10.072675442419055 (change=23.42960081190517 %)
[2025-11-27 02:45:32] 2025-11-27 07:44:32,232 | INFO     | right removable region: 538
[2025-11-27 02:45:32] 2025-11-27 07:44:32,232 | INFO     | sum of square deviations: 48556121084.17781
[2025-11-27 02:45:32] 2025-11-27 07:44:32,237 | INFO     | sum of deviations: 487316999977.44495
[2025-11-27 02:45:32] 2025-11-27 07:44:32,237 | INFO     | mean x: 1764212992.9276438
[2025-11-27 02:45:32] 2025-11-27 07:44:32,237 | INFO     | mean y: 2851103.3191094617
[2025-11-27 02:45:32] 2025-11-27 07:44:32,237 | INFO     | intersect: -17703072760.415447
[2025-11-27 02:45:32] 2025-11-27 07:44:32,238 | INFO     | chi2: 8.576606462044023
[2025-11-27 02:45:32] 2025-11-27 07:44:32,238 | INFO     | current chi2=8.576606462044023 (change=34.80240833410711 %)
[2025-11-27 02:45:32] 2025-11-27 07:44:32,238 | INFO     | sum of square deviations: 47217180687.335266
[2025-11-27 02:45:32] 2025-11-27 07:44:32,261 | INFO     | sum of deviations: 295152710976.40845
[2025-11-27 02:45:32] 2025-11-27 07:44:32,261 | INFO     | mean x: 1764213145.4363296
[2025-11-27 02:45:32] 2025-11-27 07:44:32,261 | INFO     | mean y: 2872996.4531835206
[2025-11-27 02:45:32] 2025-11-27 07:44:32,261 | INFO     | intersect: -11025152926.22577
[2025-11-27 02:45:32] 2025-11-27 07:44:32,262 | INFO     | chi2: 5.231245424695874
[2025-11-27 02:45:32] 2025-11-27 07:44:32,262 | INFO     | current chi2=5.231245424695874 (change=39.00564928743231 %)
[2025-11-27 02:45:32] 2025-11-27 07:44:32,263 | INFO     | sum of square deviations: 45903142749.18329
[2025-11-27 02:45:32] 2025-11-27 07:44:32,268 | INFO     | sum of deviations: 198661147458.932
[2025-11-27 02:45:32] 2025-11-27 07:44:32,269 | INFO     | mean x: 1764213297.9413989
[2025-11-27 02:45:32] 2025-11-27 07:44:32,269 | INFO     | mean y: 2884161.5784499054
[2025-11-27 02:45:32] 2025-11-27 07:44:32,269 | INFO     | intersect: -7632336808.941716
[2025-11-27 02:45:32] 2025-11-27 07:44:32,269 | INFO     | chi2: 4.190703778174013
[2025-11-27 02:45:32] 2025-11-27 07:44:32,270 | INFO     | current chi2=4.190703778174013 (change=19.890897139133067 %)
[2025-11-27 02:45:32] 2025-11-27 07:44:32,270 | INFO     | left removable region: 30
[2025-11-27 02:45:32] 2025-11-27 07:44:32,270 | INFO     | sum of square deviations: 40650640446.047195
[2025-11-27 02:45:32] 2025-11-27 07:44:32,276 | INFO     | sum of deviations: 362158520869.80273
[2025-11-27 02:45:32] 2025-11-27 07:44:32,276 | INFO     | mean x: 1764213572.456693
[2025-11-27 02:45:32] 2025-11-27 07:44:32,276 | INFO     | mean y: 2915641.2637795275
[2025-11-27 02:45:32] 2025-11-27 07:44:32,276 | INFO     | intersect: -15714548361.482935
[2025-11-27 02:45:32] 2025-11-27 07:44:32,277 | INFO     | chi2: 0.3631229282700411
[2025-11-27 02:45:32] 2025-11-27 07:44:32,277 | INFO     | current memory leak: 8.91 B/s (using 508 data points, chi2=0.36)
[2025-11-27 02:45:32] 2025-11-27 07:44:32,277 | INFO     | could have reported an average CPU frequency of 3390 MHz (22 samples)
[2025-11-27 02:45:32] 2025-11-27 07:44:32,278 | INFO     | ..............................
[2025-11-27 02:45:32] 2025-11-27 07:44:32,278 | INFO     | . Timing measurements:
[2025-11-27 02:45:32] 2025-11-27 07:44:32,278 | INFO     | . get job = 0 s
[2025-11-27 02:45:32] 2025-11-27 07:44:32,278 | INFO     | . initial setup = 5 s
[2025-11-27 02:45:32] 2025-11-27 07:44:32,278 | INFO     | . payload setup = 33 s
[2025-11-27 02:45:32] 2025-11-27 07:44:32,278 | INFO     | . stage-in = 0 s
[2025-11-27 02:45:32] 2025-11-27 07:44:32,278 | INFO     | . payload execution = 33200 s
[2025-11-27 02:45:32] 2025-11-27 07:44:32,278 | INFO     | . stage-out = 3 s
[2025-11-27 02:45:32] 2025-11-27 07:44:32,278 | INFO     | . log creation = 0 s
[2025-11-27 02:45:32] 2025-11-27 07:44:32,278 | INFO     | ..............................
[2025-11-27 02:45:32] 2025-11-27 07:44:32,354 | INFO     | 
[2025-11-27 02:45:32] 2025-11-27 07:44:32,355 | INFO     | job summary report
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | --------------------------------------------------
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | PanDA job id: 6896451273
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | task id: 47556149
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | errors: (none)
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | pilot state: finished 
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | transexitcode: 0
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | exeerrorcode: 0
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | exeerrordiag: 
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | exitcode: 0
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | exitmsg: OK
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | cpuconsumptiontime: 183247 s
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | nevents: 1000
[2025-11-27 02:45:32] 2025-11-27 07:44:32,356 | INFO     | neventsw: 0
[2025-11-27 02:45:32] 2025-11-27 07:44:32,357 | INFO     | pid: 2784638
[2025-11-27 02:45:32] 2025-11-27 07:44:32,357 | INFO     | pgrp: 2784638
[2025-11-27 02:45:32] 2025-11-27 07:44:32,357 | INFO     | corecount: 8
[2025-11-27 02:45:32] 2025-11-27 07:44:32,357 | INFO     | event service: False
[2025-11-27 02:45:32] 2025-11-27 07:44:32,357 | INFO     | sizes: {0: 2284315, 11: 2284315, 22: 2284343, 27: 2284633, 32: 2284661, 33238: 2324276, 33241: 2333326, 33252: 2333516}
[2025-11-27 02:45:32] 2025-11-27 07:44:32,357 | INFO     | --------------------------------------------------
[2025-11-27 02:45:32] 2025-11-27 07:44:32,357 | INFO     | 
[2025-11-27 02:45:32] 2025-11-27 07:44:32,357 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 02:45:32] 2025-11-27 07:44:32,381 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,381 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,381 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,381 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,382 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:45:32] 2025-11-27 07:44:32,383 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,383 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:45:32] 2025-11-27 07:44:32,383 | INFO     | job 6896451273 has completed (purged errors)
[2025-11-27 02:45:32] 2025-11-27 07:44:32,383 | INFO     | overall cleanup function is called
[2025-11-27 02:45:32] 2025-11-27 07:44:33,405 | INFO     | --- collectZombieJob: --- 10, [2784638]
[2025-11-27 02:45:32] 2025-11-27 07:44:33,405 | INFO     | zombie collector waiting for pid 2784638
[2025-11-27 02:45:32] 2025-11-27 07:44:33,406 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:45:32] 2025-11-27 07:44:33,406 | INFO     | collected zombie processes
[2025-11-27 02:45:32] 2025-11-27 07:44:33,406 | INFO     | will attempt to kill all subprocesses of pid=2784638
[2025-11-27 02:45:32] 2025-11-27 07:44:34,865 | INFO     | process IDs to be killed: [2784638] (in reverse order)
[2025-11-27 02:45:32] 2025-11-27 07:44:35,130 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:45:32] 2025-11-27 07:44:35,130 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:45:32] 2025-11-27 07:44:35,166 | INFO     | did not find any defunct processes belonging to 2784638
[2025-11-27 02:45:32] 2025-11-27 07:44:35,212 | INFO     | did not find any defunct processes belonging to 2784638
[2025-11-27 02:45:32] 2025-11-27 07:44:35,221 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:45:32] 2025-11-27 07:44:35,221 | INFO     | ready for new job
[2025-11-27 02:45:32] 2025-11-27 07:44:35,221 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:45:32] 2025-11-27 07:44:35,224 | INFO     | ***************************************
[2025-11-27 02:45:32] 2025-11-27 07:44:35,224 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:45:32] 2025-11-27 07:44:35,224 | INFO     | ***************************************
[2025-11-27 02:45:32] 2025-11-27 07:44:35,224 | INFO     | 
[2025-11-27 02:45:32] 2025-11-27 07:44:35,251 | INFO     | architecture information:
[2025-11-27 02:45:32] 2025-11-27 07:44:35,252 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:45:32] 2025-11-27 07:44:35,277 | INFO     | cat /etc/os-release:
[2025-11-27 02:45:32] NAME="CentOS Linux"
[2025-11-27 02:45:32] VERSION="7 (Core)"
[2025-11-27 02:45:32] ID="centos"
[2025-11-27 02:45:32] ID_LIKE="rhel fedora"
[2025-11-27 02:45:32] VERSION_ID="7"
[2025-11-27 02:45:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:45:32] ANSI_COLOR="0;31"
[2025-11-27 02:45:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:45:32] HOME_URL="https://www.centos.org/"
[2025-11-27 02:45:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:45:32] 
[2025-11-27 02:45:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:45:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:45:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:45:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:45:32] 
[2025-11-27 02:45:32] 2025-11-27 07:44:35,277 | INFO     | ***************************************
[2025-11-27 02:45:32] 2025-11-27 07:44:35,796 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 02:45:32] 2025-11-27 07:44:35,889 | INFO     | sufficient remaining disk space (67444408320 B)
[2025-11-27 02:45:32] 2025-11-27 07:44:35,889 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:45:32] 2025-11-27 07:44:35,889 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:45:32] 2025-11-27 07:44:35,889 | INFO     | update_server=False
[2025-11-27 02:45:32] 2025-11-27 07:44:35,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:45:32] 2025-11-27 07:44:35,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:45:32] 2025-11-27 07:44:35,911 | INFO     | aborting loop
[2025-11-27 02:45:32] 2025-11-27 07:44:36,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:45:32] 2025-11-27 07:44:36,702 | INFO     | all data control threads have been joined
[2025-11-27 02:45:32] 2025-11-27 07:44:36,732 | INFO     | all payload control threads have been joined
[2025-11-27 02:45:32] 2025-11-27 07:44:36,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:45:32] 2025-11-27 07:44:36,854 | INFO     | all job control threads have been joined
[2025-11-27 02:45:32] 2025-11-27 07:44:36,895 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:36,913 | INFO     | [job] validate thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:36,916 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:37,147 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:37,257 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:37,367 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:45:32] 2025-11-27 07:44:37,579 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:37,708 | INFO     | [data] control thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:37,740 | INFO     | [payload] control thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:37,860 | INFO     | [job] control thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:37,900 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:38,251 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:38,300 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:38,373 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:38,820 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:40,517 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:44:46,597 | INFO     | job.realtimelogging is not enabled
[2025-11-27 02:45:32] 2025-11-27 07:44:47,603 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:45:32] 2025-11-27 07:45:04,315 | INFO     | PID=2742145 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:45:32] 2025-11-27 07:45:04,315 | INFO     | .. there are 85 such processes running
[2025-11-27 02:45:32] 2025-11-27 07:45:04,315 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:45:32] 2025-11-27 07:45:04,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:45:32] 2025-11-27 07:45:04,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:45:32] 2025-11-27 07:45:25,128 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:45:32] 2025-11-27 07:45:26,708 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140124064814912)>', '<ExcThread(monitor, started 140123792447232)>']
[2025-11-27 02:45:32] 2025-11-27 07:45:27,487 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:45:32] 2025-11-27 07:45:27,487 | INFO     | [monitor] control thread has ended
[2025-11-27 02:45:32] 2025-11-27 07:45:31,736 | INFO     | all workflow threads have been joined
[2025-11-27 02:45:32] 2025-11-27 07:45:31,736 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:45:32] 2025-11-27 07:45:31,737 | INFO     | traces error code: 0
[2025-11-27 02:45:32] 2025-11-27 07:45:31,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:45:32] 2025-11-27 07:45:32,032 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:45:32] 2025-11-27 07:45:32,034 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:45:32] 2025-11-27 07:45:32,036 [wrapper] pilotpid: 2742145
[2025-11-27 02:45:32] 2025-11-27 07:45:32,038 [wrapper] Pilot exit status: 0
[2025-11-27 02:45:32] 2025-11-27 07:45:32,084 [wrapper] pandaids: 6896451273
[2025-11-27 02:45:32] 2025-11-27 07:45:32,318 [wrapper] cleanup supervisor_pilot  671698 2742146
[2025-11-27 02:45:32] 2025-11-27 07:45:32,321 [wrapper] Test setup, not cleaning
[2025-11-27 02:45:32] 2025-11-27 07:45:32,324 [wrapper] apfmon messages muted
[2025-11-27 02:45:32] 2025-11-27 07:45:32,325 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:45:32] 2025-11-27 07:45:32,327 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:45:32]  *** Error codes and diagnostics ***
[2025-11-27 02:45:32]     "exeErrorCode": 0,
[2025-11-27 02:45:32]     "exeErrorDiag": "",
[2025-11-27 02:45:32]     "pilotErrorCode": 0,
[2025-11-27 02:45:32]     "pilotErrorDiag": "",
[2025-11-27 02:45:32]  *** Listing of results directory ***
[2025-11-27 02:45:32] total 1313980
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:30 queuedata.json
[2025-11-27 02:45:32] -rwx------. 1 boincer umatlas     36292 Nov 24 23:32 runpilot2-wrapper.sh
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas       100 Nov 26 17:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:45:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 17:28 run_atlas
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas       105 Nov 26 17:28 job.xml
[2025-11-27 02:45:32] -rw-r--r--. 2 boincer umatlas 409546655 Nov 26 17:28 EVNT.47483658._001511.pool.root.1
[2025-11-27 02:45:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 17:28 start_atlas.sh
[2025-11-27 02:45:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 17:28 shared
[2025-11-27 02:45:32] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 17:28 input.tar.gz
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas         0 Nov 26 17:28 boinc_lockfile
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 17:28 pandaJob.out
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas        57 Nov 26 17:28 setup.sh.local
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas    991546 Nov 26 17:29 agis_schedconf.cvmfs.json
[2025-11-27 02:45:32] drwx------. 5 boincer umatlas      4096 Nov 26 17:29 pilot3
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas       532 Nov 27 02:33 boinc_task_state.xml
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas      6947 Nov 27 02:40 init_data.xml
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas 919763029 Nov 27 02:43 HITS.47556149._004979.pool.root.1
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas      1080 Nov 27 02:44 memory_monitor_summary.json
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas   1516240 Nov 27 02:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas   1801573 Nov 27 02:44 log.47556149._004979.job.log.tgz.1
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas        95 Nov 27 02:44 pilot_heartbeat.json
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas      7937 Nov 27 02:44 heartbeat.json
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:45 boinc_mmap_file
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:45 wrapper_checkpoint.txt
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas      4896 Nov 27 02:45 pilotlog.txt
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas   4344571 Nov 27 02:45 log.47556149._004979.job.log.1
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas       353 Nov 27 02:45 output.list
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas       620 Nov 27 02:45 runtime_log
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas   6164480 Nov 27 02:45 result.tar.gz
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 02:45 runtime_log.err
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas       663 Nov 27 02:45 HwxMDmvtzh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDme7LKDm5COIwm.diag
[2025-11-27 02:45:32] -rw-r--r--. 1 boincer umatlas     21378 Nov 27 02:45 stderr.txt
[2025-11-27 02:45:32] HITS file was successfully produced:
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas 919763029 Nov 27 02:43 shared/HITS.pool.root.1
[2025-11-27 02:45:32]  *** Contents of shared directory: ***
[2025-11-27 02:45:32] total 1304780
[2025-11-27 02:45:32] -rw-r--r--. 2 boincer umatlas 409546655 Nov 26 17:28 ATLAS.root_0
[2025-11-27 02:45:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 17:28 start_atlas.sh
[2025-11-27 02:45:32] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 17:28 input.tar.gz
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas 919763029 Nov 27 02:43 HITS.pool.root.1
[2025-11-27 02:45:32] -rw-------. 1 boincer umatlas   6164480 Nov 27 02:45 result.tar.gz
02:45:33 (2722484): run_atlas exited; CPU time 184246.914785
02:45:33 (2722484): called boinc_finish(0)

</stderr_txt>
]]>

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