Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:34:03 (24726): wrapper (7.7.26015): starting
17:34:03 (24726): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:34:03] Arguments: --nthreads 8
[2025-11-26 17:34:03] Threads: 8
[2025-11-26 17:34:03] Checking for CVMFS
[2025-11-26 17:34:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:34:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:34:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:34:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:34:03] 2.11.2.0 5524 118290 136764 153337 0 81 15738106 18432001 1885 130560 0 86629990 99.975 5011346 32742 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 17:34:03] CVMFS is ok
[2025-11-26 17:34:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:34:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:34:03] Further information can be found at the LHC@home message board.
[2025-11-26 17:34:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:34:03] Checking for apptainer binary...
[2025-11-26 17:34:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:34:03] Running /usr/bin/apptainer --version
[2025-11-26 17:34:03] apptainer version 1.3.2-1.el7
[2025-11-26 17:34:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:34:04] c-206-5.aglt2.org
[2025-11-26 17:34:04] apptainer works
[2025-11-26 17:34:04] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:34:04] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:34:04] Starting ATLAS job with PandaID=6892541982
[2025-11-26 17:34:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:40:04 (24726): BOINC client no longer exists - exiting
07:40:04 (24726): timer handler: client dead, exiting
07:46:26 (6339): wrapper (7.7.26015): starting
07:46:26 (6339): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 07:46:26] Arguments: --nthreads 8
[2025-11-27 07:46:26] Threads: 8
[2025-11-27 07:46:26] This job has been restarted, cleaning up previous attempt
[2025-11-27 07:46:26] Checking for CVMFS
[2025-11-27 07:46:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:46:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:46:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:46:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:46:27] 2.11.2.0 5524 119143 135032 153364 1 56 15952119 18432001 1 130560 0 87266495 99.975 5046760 32763 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 07:46:27] CVMFS is ok
[2025-11-27 07:46:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:46:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:46:27] Further information can be found at the LHC@home message board.
[2025-11-27 07:46:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:46:27] Checking for apptainer binary...
[2025-11-27 07:46:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:46:27] Running /usr/bin/apptainer --version
[2025-11-27 07:46:27] apptainer version 1.3.2-1.el7
[2025-11-27 07:46:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:46:28] c-206-5.aglt2.org
[2025-11-27 07:46:28] apptainer works
[2025-11-27 07:46:28] Set ATHENA_PROC_NUMBER=8
[2025-11-27 07:46:28] Set ATHENA_CORE_NUMBER=8
[2025-11-27 07:46:28] Starting ATLAS job with PandaID=6892541982
[2025-11-27 07:46:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:44:59]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:44:59] 2025-11-28 08:44:25,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 03:44:59] 2025-11-28 08:44:26,140 | INFO     | time since job start (71865s) is within the limit (172800.0s)
[2025-11-28 03:44:59] 2025-11-28 08:44:26,140 | INFO     | 71867s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-28 03:44:59] 2025-11-28 08:44:27,124 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 03:44:59] 2025-11-28 08:44:27,130 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2477.9166666666665
[2025-11-28 03:44:59] 2025-11-28 08:44:27,135 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6892541982/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 03:44:59] 2025-11-28 08:44:27,135 | INFO     | extracted standard info from prmon json
[2025-11-28 03:44:59] 2025-11-28 08:44:27,136 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:44:59] 2025-11-28 08:44:27,136 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:44:59] 2025-11-28 08:44:27,166 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:44:59] 2025-11-28 08:44:27,168 | INFO     | sum of square deviations: 506887613179.3648
[2025-11-28 03:44:59] 2025-11-28 08:44:27,217 | INFO     | sum of deviations: 2149714102456.8892
[2025-11-28 03:44:59] 2025-11-28 08:44:27,217 | INFO     | mean x: 1764283527.2648556
[2025-11-28 03:44:59] 2025-11-28 08:44:27,217 | INFO     | mean y: 2867118.2920203735
[2025-11-28 03:44:59] 2025-11-28 08:44:27,217 | INFO     | intersect: -7479472320.82853
[2025-11-28 03:44:59] 2025-11-28 08:44:27,219 | INFO     | chi2: 6.455668689716221
[2025-11-28 03:44:59] 2025-11-28 08:44:27,221 | INFO     | sum of square deviations: 500460781428.92615
[2025-11-28 03:44:59] 2025-11-28 08:44:27,269 | INFO     | sum of deviations: 2515677552839.797
[2025-11-28 03:44:59] 2025-11-28 08:44:27,270 | INFO     | mean x: 1764283374.768116
[2025-11-28 03:44:59] 2025-11-28 08:44:27,270 | INFO     | mean y: 2875797.491901108
[2025-11-28 03:44:59] 2025-11-28 08:44:27,270 | INFO     | intersect: -8865687429.540735
[2025-11-28 03:44:59] 2025-11-28 08:44:27,271 | INFO     | chi2: 3.6213216235185643
[2025-11-28 03:44:59] 2025-11-28 08:44:27,272 | INFO     | current chi2=3.6213216235185643 (change=43.904778922634726 %)
[2025-11-28 03:44:59] 2025-11-28 08:44:27,273 | INFO     | sum of square deviations: 494088508840.9653
[2025-11-28 03:44:59] 2025-11-28 08:44:27,310 | INFO     | sum of deviations: 2712185072222.954
[2025-11-28 03:44:59] 2025-11-28 08:44:27,311 | INFO     | mean x: 1764283222.271404
[2025-11-28 03:44:59] 2025-11-28 08:44:27,311 | INFO     | mean y: 2880499.672089041
[2025-11-28 03:44:59] 2025-11-28 08:44:27,311 | INFO     | intersect: -9681745904.29495
[2025-11-28 03:44:59] 2025-11-28 08:44:27,312 | INFO     | chi2: 2.729499813905982
[2025-11-28 03:44:59] 2025-11-28 08:44:27,312 | INFO     | current chi2=2.729499813905982 (change=24.62697054635171 %)
[2025-11-28 03:44:59] 2025-11-28 08:44:27,312 | INFO     | right removable region: 1167
[2025-11-28 03:44:59] 2025-11-28 08:44:27,313 | INFO     | sum of square deviations: 500460231818.925
[2025-11-28 03:44:59] 2025-11-28 08:44:27,341 | INFO     | sum of deviations: 1860503393504.2578
[2025-11-28 03:44:59] 2025-11-28 08:44:27,341 | INFO     | mean x: 1764283679.768116
[2025-11-28 03:44:59] 2025-11-28 08:44:27,341 | INFO     | mean y: 2873971.493606138
[2025-11-28 03:44:59] 2025-11-28 08:44:27,342 | INFO     | intersect: -6556000369.795527
[2025-11-28 03:44:59] 2025-11-28 08:44:27,343 | INFO     | chi2: 4.487397676990772
[2025-11-28 03:44:59] 2025-11-28 08:44:27,343 | INFO     | current chi2=4.487397676990772 (change=30.489033860440724 %)
[2025-11-28 03:44:59] 2025-11-28 08:44:27,345 | INFO     | sum of square deviations: 494087695591.1223
[2025-11-28 03:44:59] 2025-11-28 08:44:27,393 | INFO     | sum of deviations: 1763809258648.582
[2025-11-28 03:44:59] 2025-11-28 08:44:27,393 | INFO     | mean x: 1764283832.2679794
[2025-11-28 03:44:59] 2025-11-28 08:44:27,393 | INFO     | mean y: 2876285.1866438356
[2025-11-28 03:44:59] 2025-11-28 08:44:27,394 | INFO     | intersect: -6295317711.559746
[2025-11-28 03:44:59] 2025-11-28 08:44:27,395 | INFO     | chi2: 4.3848913688260085
[2025-11-28 03:44:59] 2025-11-28 08:44:27,396 | INFO     | current chi2=4.3848913688260085 (change=2.2843152210548934 %)
[2025-11-28 03:44:59] 2025-11-28 08:44:27,396 | INFO     | left removable region: 20
[2025-11-28 03:44:59] 2025-11-28 08:44:27,397 | INFO     | sum of square deviations: 467914083187.4157
[2025-11-28 03:44:59] 2025-11-28 08:44:27,443 | INFO     | sum of deviations: 2209665175757.111
[2025-11-28 03:44:59] 2025-11-28 08:44:27,444 | INFO     | mean x: 1764283801.7759373
[2025-11-28 03:44:59] 2025-11-28 08:44:27,444 | INFO     | mean y: 2894384.8953792504
[2025-11-28 03:44:59] 2025-11-28 08:44:27,444 | INFO     | intersect: -8328713098.214241
[2025-11-28 03:44:59] 2025-11-28 08:44:27,445 | INFO     | chi2: 0.41972096329008224
[2025-11-28 03:44:59] 2025-11-28 08:44:27,446 | INFO     | current memory leak: 4.72 B/s (using 1147 data points, chi2=0.42)
[2025-11-28 03:44:59] 2025-11-28 08:44:27,447 | INFO     | could have reported an average CPU frequency of 2572 MHz (43 samples)
[2025-11-28 03:44:59] 2025-11-28 08:44:27,447 | INFO     | ..............................
[2025-11-28 03:44:59] 2025-11-28 08:44:27,447 | INFO     | . Timing measurements:
[2025-11-28 03:44:59] 2025-11-28 08:44:27,448 | INFO     | . get job = 0 s
[2025-11-28 03:44:59] 2025-11-28 08:44:27,448 | INFO     | . initial setup = 2 s
[2025-11-28 03:44:59] 2025-11-28 08:44:27,448 | INFO     | . payload setup = 6 s
[2025-11-28 03:44:59] 2025-11-28 08:44:27,448 | INFO     | . stage-in = 0 s
[2025-11-28 03:44:59] 2025-11-28 08:44:27,448 | INFO     | . payload execution = 71828 s
[2025-11-28 03:44:59] 2025-11-28 08:44:27,448 | INFO     | . stage-out = 4 s
[2025-11-28 03:44:59] 2025-11-28 08:44:27,449 | INFO     | . log creation = 0 s
[2025-11-28 03:44:59] 2025-11-28 08:44:27,449 | INFO     | ..............................
[2025-11-28 03:44:59] 2025-11-28 08:44:27,814 | INFO     | 
[2025-11-28 03:44:59] 2025-11-28 08:44:27,814 | INFO     | job summary report
[2025-11-28 03:44:59] 2025-11-28 08:44:27,814 | INFO     | --------------------------------------------------
[2025-11-28 03:44:59] 2025-11-28 08:44:27,814 | INFO     | PanDA job id: 6892541982
[2025-11-28 03:44:59] 2025-11-28 08:44:27,814 | INFO     | task id: 47493029
[2025-11-28 03:44:59] 2025-11-28 08:44:27,815 | INFO     | errors: (none)
[2025-11-28 03:44:59] 2025-11-28 08:44:27,815 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:44:59] 2025-11-28 08:44:27,815 | INFO     | pilot state: finished 
[2025-11-28 03:44:59] 2025-11-28 08:44:27,815 | INFO     | transexitcode: 0
[2025-11-28 03:44:59] 2025-11-28 08:44:27,815 | INFO     | exeerrorcode: 0
[2025-11-28 03:44:59] 2025-11-28 08:44:27,815 | INFO     | exeerrordiag: 
[2025-11-28 03:44:59] 2025-11-28 08:44:27,816 | INFO     | exitcode: 0
[2025-11-28 03:44:59] 2025-11-28 08:44:27,816 | INFO     | exitmsg: OK
[2025-11-28 03:44:59] 2025-11-28 08:44:27,816 | INFO     | cpuconsumptiontime: 548877 s
[2025-11-28 03:44:59] 2025-11-28 08:44:27,816 | INFO     | nevents: 1000
[2025-11-28 03:44:59] 2025-11-28 08:44:27,816 | INFO     | neventsw: 0
[2025-11-28 03:44:59] 2025-11-28 08:44:27,816 | INFO     | pid: 5408
[2025-11-28 03:44:59] 2025-11-28 08:44:27,817 | INFO     | pgrp: 5408
[2025-11-28 03:44:59] 2025-11-28 08:44:27,817 | INFO     | corecount: 8
[2025-11-28 03:44:59] 2025-11-28 08:44:27,817 | INFO     | event service: False
[2025-11-28 03:44:59] 2025-11-28 08:44:27,817 | INFO     | sizes: {0: 2284253, 4: 2284515, 11: 2284543, 71839: 2341604, 71844: 2350598, 71847: 2350654, 71851: 2351028}
[2025-11-28 03:44:59] 2025-11-28 08:44:27,817 | INFO     | --------------------------------------------------
[2025-11-28 03:44:59] 2025-11-28 08:44:27,817 | INFO     | 
[2025-11-28 03:44:59] 2025-11-28 08:44:27,818 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 03:44:59] 2025-11-28 08:44:27,846 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,846 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,846 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,846 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,846 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,846 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,847 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,847 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,847 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,847 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,847 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,847 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,847 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,847 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,847 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,848 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,848 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,848 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:44:59] 2025-11-28 08:44:27,848 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,848 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:44:59] 2025-11-28 08:44:27,848 | INFO     | job 6892541982 has completed (purged errors)
[2025-11-28 03:44:59] 2025-11-28 08:44:27,848 | INFO     | overall cleanup function is called
[2025-11-28 03:44:59] 2025-11-28 08:44:28,860 | INFO     | --- collectZombieJob: --- 10, [5408]
[2025-11-28 03:44:59] 2025-11-28 08:44:28,860 | INFO     | zombie collector waiting for pid 5408
[2025-11-28 03:44:59] 2025-11-28 08:44:28,861 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:44:59] 2025-11-28 08:44:28,861 | INFO     | collected zombie processes
[2025-11-28 03:44:59] 2025-11-28 08:44:28,861 | INFO     | will attempt to kill all subprocesses of pid=5408
[2025-11-28 03:44:59] 2025-11-28 08:44:29,003 | INFO     | process IDs to be killed: [5408] (in reverse order)
[2025-11-28 03:44:59] 2025-11-28 08:44:29,065 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:44:59] 2025-11-28 08:44:29,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:44:59] 2025-11-28 08:44:29,071 | INFO     | did not find any defunct processes belonging to 5408
[2025-11-28 03:44:59] 2025-11-28 08:44:29,076 | INFO     | did not find any defunct processes belonging to 5408
[2025-11-28 03:44:59] 2025-11-28 08:44:29,078 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:44:59] 2025-11-28 08:44:29,079 | INFO     | ready for new job
[2025-11-28 03:44:59] 2025-11-28 08:44:29,079 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:44:59] 2025-11-28 08:44:29,084 | INFO     | ***************************************
[2025-11-28 03:44:59] 2025-11-28 08:44:29,084 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:44:59] 2025-11-28 08:44:29,085 | INFO     | ***************************************
[2025-11-28 03:44:59] 2025-11-28 08:44:29,085 | INFO     | 
[2025-11-28 03:44:59] 2025-11-28 08:44:29,086 | INFO     | architecture information:
[2025-11-28 03:44:59] 2025-11-28 08:44:29,087 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:44:59] 2025-11-28 08:44:29,099 | INFO     | cat /etc/os-release:
[2025-11-28 03:44:59] NAME="CentOS Linux"
[2025-11-28 03:44:59] VERSION="7 (Core)"
[2025-11-28 03:44:59] ID="centos"
[2025-11-28 03:44:59] ID_LIKE="rhel fedora"
[2025-11-28 03:44:59] VERSION_ID="7"
[2025-11-28 03:44:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:44:59] ANSI_COLOR="0;31"
[2025-11-28 03:44:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:44:59] HOME_URL="https://www.centos.org/"
[2025-11-28 03:44:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:44:59] 
[2025-11-28 03:44:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:44:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:44:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:44:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:44:59] 
[2025-11-28 03:44:59] 2025-11-28 08:44:29,100 | INFO     | ***************************************
[2025-11-28 03:44:59] 2025-11-28 08:44:29,603 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 03:44:59] 2025-11-28 08:44:29,618 | INFO     | sufficient remaining disk space (26332889088 B)
[2025-11-28 03:44:59] 2025-11-28 08:44:29,619 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:44:59] 2025-11-28 08:44:29,619 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:44:59] 2025-11-28 08:44:29,619 | INFO     | update_server=False
[2025-11-28 03:44:59] 2025-11-28 08:44:29,619 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:44:59] 2025-11-28 08:44:29,620 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:44:59] 2025-11-28 08:44:29,620 | INFO     | aborting loop
[2025-11-28 03:44:59] 2025-11-28 08:44:29,620 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:44:59] 2025-11-28 08:44:29,681 | INFO     | all payload control threads have been joined
[2025-11-28 03:44:59] 2025-11-28 08:44:29,718 | INFO     | all data control threads have been joined
[2025-11-28 03:44:59] 2025-11-28 08:44:29,758 | INFO     | all job control threads have been joined
[2025-11-28 03:44:59] 2025-11-28 08:44:30,626 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:30,626 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:30,687 | INFO     | [payload] control thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:30,723 | INFO     | [data] control thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:30,764 | INFO     | [job] control thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:30,882 | INFO     | [job] validate thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:30,884 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:30,897 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:31,048 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:31,095 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:44:59] 2025-11-28 08:44:31,569 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:31,623 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:31,780 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:32,085 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:32,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:44:59] 2025-11-28 08:44:33,101 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:33,618 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:33,626 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:44:59] 2025-11-28 08:44:39,560 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:44:59] 2025-11-28 08:44:41,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465429399360)>', '<ExcThread(monitor, started 140464598533888)>']
[2025-11-28 03:44:59] 2025-11-28 08:44:46,571 | INFO     | all workflow threads have been joined
[2025-11-28 03:44:59] 2025-11-28 08:44:46,571 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:44:59] 2025-11-28 08:44:46,572 | INFO     | traces error code: 0
[2025-11-28 03:44:59] 2025-11-28 08:44:46,572 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:44:59] 2025-11-28 08:44:59,386 | INFO     | PID=18475 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 03:44:59] 2025-11-28 08:44:59,386 | INFO     | .. there are 3 such processes running
[2025-11-28 03:44:59] 2025-11-28 08:44:59,387 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:44:59] 2025-11-28 08:44:59,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:44:59] 2025-11-28 08:44:59,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:44:59] 2025-11-28 08:44:59,387 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:44:59] 2025-11-28 08:44:59,387 | INFO     | [monitor] control thread has ended
[2025-11-28 03:44:59] 2025-11-28 08:44:59,506 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:44:59] 2025-11-28 08:44:59,509 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:44:59] 2025-11-28 08:44:59,511 [wrapper] pilotpid: 18475
[2025-11-28 03:44:59] 2025-11-28 08:44:59,513 [wrapper] Pilot exit status: 0
[2025-11-28 03:44:59] 2025-11-28 08:44:59,522 [wrapper] pandaids: 6892541982 6892541982
[2025-11-28 03:44:59] 2025-11-28 08:44:59,561 [wrapper] cleanup supervisor_pilot 29271 18476
[2025-11-28 03:44:59] 2025-11-28 08:44:59,564 [wrapper] Test setup, not cleaning
[2025-11-28 03:44:59] 2025-11-28 08:44:59,566 [wrapper] apfmon messages muted
[2025-11-28 03:44:59] 2025-11-28 08:44:59,569 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:44:59] 2025-11-28 08:44:59,572 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:44:59]  *** Error codes and diagnostics ***
[2025-11-28 03:44:59]     "exeErrorCode": 0,
[2025-11-28 03:44:59]     "exeErrorDiag": "",
[2025-11-28 03:44:59]     "pilotErrorCode": 0,
[2025-11-28 03:44:59]     "pilotErrorDiag": "",
[2025-11-28 03:44:59]  *** Listing of results directory ***
[2025-11-28 03:44:59] total 1744300
[2025-11-28 03:44:59] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas    576529 Nov 19 02:46 pilot3.tar.gz
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas      5112 Nov 19 02:47 queuedata.json
[2025-11-28 03:44:59] -rwx------ 1 boincer umatlas     36292 Nov 19 02:48 runpilot2-wrapper.sh
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas       100 Nov 26 17:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:44:59] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 17:33 run_atlas
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas       105 Nov 26 17:33 job.xml
[2025-11-28 03:44:59] -rw-r--r-- 3 boincer umatlas 410543016 Nov 26 17:34 EVNT.47493027._000254.pool.root.1
[2025-11-28 03:44:59] -rw-r--r-- 3 boincer umatlas 410543016 Nov 26 17:34 ATLAS.root_0
[2025-11-28 03:44:59] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 17:34 start_atlas.sh
[2025-11-28 03:44:59] drwxrwx--x 2 boincer umatlas      4096 Nov 26 17:34 shared
[2025-11-28 03:44:59] -rw-r--r-- 2 boincer umatlas    590095 Nov 26 17:34 input.tar.gz
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas         0 Nov 26 17:34 boinc_lockfile
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas      2772 Nov 27 07:46 pandaJob.out
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas    991566 Nov 27 07:46 agis_schedconf.cvmfs.json
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas       534 Nov 28 03:28 boinc_task_state.xml
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas      5953 Nov 28 03:38 init_data.xml
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas 936594077 Nov 28 03:43 HITS.47493029._002493.pool.root.1
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas      1066 Nov 28 03:44 memory_monitor_summary.json
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas        96 Nov 28 03:44 pilot_heartbeat.json
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas   1516240 Nov 28 03:44 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas   2335798 Nov 28 03:44 log.47493029._002493.job.log.tgz.1
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas      8648 Nov 28 03:44 heartbeat.json
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 03:44 boinc_mmap_file
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas        30 Nov 28 03:44 wrapper_checkpoint.txt
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas       820 Nov 28 03:44 pilotlog.txt
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas   9941117 Nov 28 03:44 log.47493029._002493.job.log.1
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas       353 Nov 28 03:44 output.list
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas       620 Nov 28 03:44 runtime_log
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas  12298240 Nov 28 03:44 result.tar.gz
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas      8784 Nov 28 03:44 runtime_log.err
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas       792 Nov 28 03:44 gUhLDmW6rf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiwGKDm4WZLHn.diag
[2025-11-28 03:44:59] -rw-r--r-- 1 boincer umatlas     23563 Nov 28 03:44 stderr.txt
[2025-11-28 03:44:59] HITS file was successfully produced:
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas 936594077 Nov 28 03:43 shared/HITS.pool.root.1
[2025-11-28 03:44:59]  *** Contents of shared directory: ***
[2025-11-28 03:44:59] total 1328184
[2025-11-28 03:44:59] -rw-r--r-- 3 boincer umatlas 410543016 Nov 26 17:34 ATLAS.root_0
[2025-11-28 03:44:59] -rw-r--r-- 2 boincer umatlas     15120 Nov 26 17:34 start_atlas.sh
[2025-11-28 03:44:59] -rw-r--r-- 2 boincer umatlas    590095 Nov 26 17:34 input.tar.gz
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas 936594077 Nov 28 03:43 HITS.pool.root.1
[2025-11-28 03:44:59] -rw------- 1 boincer umatlas  12298240 Nov 28 03:44 result.tar.gz
03:45:01 (6339): run_atlas exited; CPU time 547193.410701
03:45:01 (6339): called boinc_finish(0)

</stderr_txt>
]]>

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