Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:39:27 (1267435): wrapper (7.7.26015): starting
23:39:27 (1267435): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 23:39:27] Arguments: --nthreads 3
[2025-11-26 23:39:27] Threads: 3
[2025-11-26 23:39:27] Checking for CVMFS
[2025-11-26 23:39:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:39:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:39:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:39:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:39:27] 2.9.2.0 1204567 13 51028 153337 2 88 35765717 36864000 0 130560 0 187842 99.994 119 4760 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 23:39:27] CVMFS is ok
[2025-11-26 23:39:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:39:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:39:27] Further information can be found at the LHC@home message board.
[2025-11-26 23:39:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:39:27] Checking for apptainer binary...
[2025-11-26 23:39:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:39:27] Running /usr/bin/apptainer --version
[2025-11-26 23:39:27] apptainer version 1.4.1-1.1
[2025-11-26 23:39:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:39:27] thA335
[2025-11-26 23:39:27] apptainer works
[2025-11-26 23:39:27] Set ATHENA_PROC_NUMBER=3
[2025-11-26 23:39:27] Set ATHENA_CORE_NUMBER=3
[2025-11-26 23:39:27] Starting ATLAS job with PandaID=6896420899
[2025-11-26 23:39:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:43:45]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:43:45] 2025-11-26 22:42:50,523 | INFO     | 
[2025-11-26 23:43:45] 2025-11-26 22:42:50,523 | INFO     | architecture information:
[2025-11-26 23:43:45] 2025-11-26 22:42:50,524 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:43:45] 2025-11-26 22:42:50,533 | INFO     | cat /etc/os-release:
[2025-11-26 23:43:45] NAME="CentOS Linux"
[2025-11-26 23:43:45] VERSION="7 (Core)"
[2025-11-26 23:43:45] ID="centos"
[2025-11-26 23:43:45] ID_LIKE="rhel fedora"
[2025-11-26 23:43:45] VERSION_ID="7"
[2025-11-26 23:43:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:43:45] ANSI_COLOR="0;31"
[2025-11-26 23:43:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:43:45] HOME_URL="https://www.centos.org/"
[2025-11-26 23:43:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:43:45] 
[2025-11-26 23:43:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:43:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:43:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:43:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:43:45] 
[2025-11-26 23:43:45] 2025-11-26 22:42:50,534 | INFO     | ***************************************
[2025-11-26 23:43:45] 2025-11-26 22:42:51,037 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 23:43:45] 2025-11-26 22:42:51,051 | INFO     | sufficient remaining disk space (826252722176 B)
[2025-11-26 23:43:45] 2025-11-26 22:42:51,051 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:43:45] 2025-11-26 22:42:51,051 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:43:45] 2025-11-26 22:42:51,051 | INFO     | update_server=False
[2025-11-26 23:43:45] 2025-11-26 22:42:51,052 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:43:45] 2025-11-26 22:42:51,052 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:43:45] 2025-11-26 22:42:51,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:43:45] 2025-11-26 22:42:51,128 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:43:45] 2025-11-26 22:42:51,128 | INFO     | aborting loop
[2025-11-26 23:43:45] 2025-11-26 22:42:51,884 | INFO     | all data control threads have been joined
[2025-11-26 23:43:45] 2025-11-26 22:42:52,057 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:52,058 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:52,094 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:52,129 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:52,218 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:52,506 | INFO     | all payload control threads have been joined
[2025-11-26 23:43:45] 2025-11-26 22:42:52,632 | INFO     | all job control threads have been joined
[2025-11-26 23:43:45] 2025-11-26 22:42:52,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:43:45] 2025-11-26 22:42:52,799 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:52,863 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:52,889 | INFO     | [data] control thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:52,897 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:53,058 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:53,250 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:53,469 | INFO     | [job] validate thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:53,512 | INFO     | [payload] control thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:53,543 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:53,637 | INFO     | [job] control thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:42:56,678 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:43:45] 2025-11-26 22:43:20,560 | INFO     | PID=1271176 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:43:45] 2025-11-26 22:43:20,560 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:43:45] 2025-11-26 22:43:20,560 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:43:45] 2025-11-26 22:43:20,560 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:43:45] 2025-11-26 22:43:39,715 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:43:45] 2025-11-26 22:43:40,721 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140250897512256)>', '<ExcThread(monitor, started 140250278000384)>']
[2025-11-26 23:43:45] 2025-11-26 22:43:41,673 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:43:45] 2025-11-26 22:43:41,673 | INFO     | [monitor] control thread has ended
[2025-11-26 23:43:45] 2025-11-26 22:43:45,748 | INFO     | all workflow threads have been joined
[2025-11-26 23:43:45] 2025-11-26 22:43:45,749 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:43:45] 2025-11-26 22:43:45,750 | INFO     | traces error code: 0
[2025-11-26 23:43:45] 2025-11-26 22:43:45,750 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:43:45] 2025-11-26 22:43:45,798 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:43:45] 2025-11-26 22:43:45,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:43:45] 2025-11-26 22:43:45,805 [wrapper] pilotpid: 1271176
[2025-11-26 23:43:45] 2025-11-26 22:43:45,808 [wrapper] Pilot exit status: 0
[2025-11-26 23:43:45] 2025-11-26 22:43:45,815 [wrapper] pandaids: 6896420899
[2025-11-26 23:43:45] 2025-11-26 22:43:45,834 [wrapper] cleanup supervisor_pilot 1271182 1271177
[2025-11-26 23:43:45] 2025-11-26 22:43:45,837 [wrapper] Test setup, not cleaning
[2025-11-26 23:43:45] 2025-11-26 22:43:45,840 [wrapper] apfmon messages muted
[2025-11-26 23:43:45] 2025-11-26 22:43:45,843 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:43:45] 2025-11-26 22:43:45,846 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:43:45]  *** Error codes and diagnostics ***
[2025-11-26 23:43:45]     "exeErrorCode": 65,
[2025-11-26 23:43:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 23:43:45]     "pilotErrorCode": 1305,
[2025-11-26 23:43:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 23:43:45]  *** Listing of results directory ***
[2025-11-26 23:43:45] total 402832
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc    576529 Nov 25 03:13 pilot3.tar.gz
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc      5112 Nov 25 03:51 queuedata.json
[2025-11-26 23:43:45] -rwx------ 1 boinc boinc     36292 Nov 25 03:53 runpilot2-wrapper.sh
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc       100 Nov 26 23:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:43:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 23:39 run_atlas
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc       105 Nov 26 23:39 job.xml
[2025-11-26 23:43:45] -rw-r--r-- 2 boinc boinc 408308900 Nov 26 23:39 EVNT.47483658._001483.pool.root.1
[2025-11-26 23:43:45] drwxrwx--x 2 boinc boinc      4096 Nov 26 23:39 shared
[2025-11-26 23:43:45] -rw-r--r-- 2 boinc boinc    590103 Nov 26 23:39 input.tar.gz
[2025-11-26 23:43:45] -rw-r--r-- 2 boinc boinc     15847 Nov 26 23:39 start_atlas.sh
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc         0 Nov 26 23:39 boinc_setup_complete
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc      6196 Nov 26 23:39 init_data.xml
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc         0 Nov 26 23:39 boinc_lockfile
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc      2786 Nov 26 23:39 pandaJob.out
[2025-11-26 23:43:45] -rw------- 1 boinc boinc    991546 Nov 26 23:39 agis_schedconf.cvmfs.json
[2025-11-26 23:43:45] -rw------- 1 boinc boinc   1516240 Nov 26 23:39 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:43:45] drwx------ 5 boinc boinc      4096 Nov 26 23:39 pilot3
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc       522 Nov 26 23:40 boinc_task_state.xml
[2025-11-26 23:43:45] -rw------- 1 boinc boinc       978 Nov 26 23:40 memory_monitor_summary.json
[2025-11-26 23:43:45] -rw------- 1 boinc boinc     55802 Nov 26 23:40 log.47556149._004700.job.log.tgz.1
[2025-11-26 23:43:45] -rw------- 1 boinc boinc        95 Nov 26 23:42 pilot_heartbeat.json
[2025-11-26 23:43:45] -rw------- 1 boinc boinc      8387 Nov 26 23:42 heartbeat.json
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc      8192 Nov 26 23:43 boinc_mmap_file
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc        22 Nov 26 23:43 wrapper_checkpoint.txt
[2025-11-26 23:43:45] -rw------- 1 boinc boinc      4752 Nov 26 23:43 pilotlog.txt
[2025-11-26 23:43:45] -rw------- 1 boinc boinc     91606 Nov 26 23:43 log.47556149._004700.job.log.1
[2025-11-26 23:43:45] -rw------- 1 boinc boinc       186 Nov 26 23:43 output.list
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc       620 Nov 26 23:43 runtime_log
[2025-11-26 23:43:45] -rw------- 1 boinc boinc    163840 Nov 26 23:43 result.tar.gz
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc      8744 Nov 26 23:43 runtime_log.err
[2025-11-26 23:43:45] -rw------- 1 boinc boinc       649 Nov 26 23:43 q82KDmhMyh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmP4LKDmrGzwWm.diag
[2025-11-26 23:43:45] -rw-r--r-- 1 boinc boinc      9400 Nov 26 23:43 stderr.txt
[2025-11-26 23:43:45] No HITS result produced
[2025-11-26 23:43:45]  *** Contents of shared directory: ***
[2025-11-26 23:43:45] total 399500
[2025-11-26 23:43:45] -rw-r--r-- 2 boinc boinc 408308900 Nov 26 23:39 ATLAS.root_0
[2025-11-26 23:43:45] -rw-r--r-- 2 boinc boinc    590103 Nov 26 23:39 input.tar.gz
[2025-11-26 23:43:45] -rw-r--r-- 2 boinc boinc     15847 Nov 26 23:39 start_atlas.sh
[2025-11-26 23:43:45] -rw------- 1 boinc boinc    163840 Nov 26 23:43 result.tar.gz
23:43:47 (1267435): run_atlas exited; CPU time 30.930744
23:43:47 (1267435): called boinc_finish(0)

</stderr_txt>
]]>

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