Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:37:20 (3700596): wrapper (7.7.26015): starting
16:37:20 (3700596): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:37:20] Arguments: --nthreads 8
[2025-11-26 16:37:20] Threads: 8
[2025-11-26 16:37:20] Checking for CVMFS
[2025-11-26 16:37:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:37:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:37:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:37:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:37:22] 2.13.2.0 2325231 31179 161220 153335 3 786 27043856 40960001 27777 16776704 0 222504177 99.713 183177642 51752 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 16:37:22] CVMFS is ok
[2025-11-26 16:37:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:37:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:37:22] Further information can be found at the LHC@home message board.
[2025-11-26 16:37:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:37:22] Checking for apptainer binary...
[2025-11-26 16:37:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:37:22] Running /usr/bin/apptainer --version
[2025-11-26 16:37:22] apptainer version 1.4.4-1.el9
[2025-11-26 16:37:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:37:22] c-208-37.aglt2.org
[2025-11-26 16:37:22] apptainer works
[2025-11-26 16:37:22] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:37:22] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:37:22] Starting ATLAS job with PandaID=6892525415
[2025-11-26 16:37:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:51:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:51:42] 2025-11-27 15:50:38,740 | INFO     | time since job start (65521s) is within the limit (172800.0s)
[2025-11-27 10:51:42] 2025-11-27 15:50:39,336 | INFO     | monitor loop #3767: job 0:6892525415 is in state 'finished'
[2025-11-27 10:51:42] 2025-11-27 15:50:39,337 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:51:42] 2025-11-27 15:50:40,748 | INFO     | time since job start (65523s) is within the limit (172800.0s)
[2025-11-27 10:51:42] 2025-11-27 15:50:41,841 | INFO     | monitor loop #3768: job 0:6892525415 is in state 'finished'
[2025-11-27 10:51:42] 2025-11-27 15:50:41,842 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:51:42] 2025-11-27 15:50:42,756 | INFO     | time since job start (65525s) is within the limit (172800.0s)
[2025-11-27 10:51:42] 2025-11-27 15:50:44,354 | INFO     | monitor loop #3769: job 0:6892525415 is in state 'finished'
[2025-11-27 10:51:42] 2025-11-27 15:50:44,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:51:42] 2025-11-27 15:50:44,764 | INFO     | time since job start (65527s) is within the limit (172800.0s)
[2025-11-27 10:51:42] 2025-11-27 15:50:46,788 | INFO     | time since job start (65529s) is within the limit (172800.0s)
[2025-11-27 10:51:42] 2025-11-27 15:50:46,887 | INFO     | monitor loop #3770: job 0:6892525415 is in state 'finished'
[2025-11-27 10:51:42] 2025-11-27 15:50:46,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:51:42] 2025-11-27 15:50:48,799 | INFO     | time since job start (65531s) is within the limit (172800.0s)
[2025-11-27 10:51:42] 2025-11-27 15:50:49,427 | INFO     | monitor loop #3771: job 0:6892525415 is in state 'finished'
[2025-11-27 10:51:42] 2025-11-27 15:50:49,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:51:42] 2025-11-27 15:50:50,805 | INFO     | time since job start (65533s) is within the limit (172800.0s)
[2025-11-27 10:51:42] 2025-11-27 15:50:51,654 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 10:51:42] 2025-11-27 15:50:51,663 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3752.3416874999984
[2025-11-27 10:51:42] 2025-11-27 15:50:51,693 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6892525415/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:51:42] 2025-11-27 15:50:51,694 | INFO     | extracted standard info from prmon json
[2025-11-27 10:51:42] 2025-11-27 15:50:51,694 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:51:42] 2025-11-27 15:50:51,694 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:51:42] 2025-11-27 15:50:51,711 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:51:42] 2025-11-27 15:50:51,712 | INFO     | sum of square deviations: 380917118210.88116
[2025-11-27 10:51:42] 2025-11-27 15:50:51,742 | INFO     | sum of deviations: 2215037268905.575
[2025-11-27 10:51:42] 2025-11-27 15:50:51,742 | INFO     | mean x: 1764225909.360411
[2025-11-27 10:51:42] 2025-11-27 15:50:51,742 | INFO     | mean y: 2892094.5088702147
[2025-11-27 10:51:42] 2025-11-27 15:50:51,742 | INFO     | intersect: -10256101143.59158
[2025-11-27 10:51:42] 2025-11-27 15:50:51,743 | INFO     | chi2: 26.811611520827633
[2025-11-27 10:51:42] 2025-11-27 15:50:51,743 | INFO     | sum of square deviations: 375607585005.3933
[2025-11-27 10:51:42] 2025-11-27 15:50:51,773 | INFO     | sum of deviations: 2563631020791.723
[2025-11-27 10:51:42] 2025-11-27 15:50:51,773 | INFO     | mean x: 1764225756.8714821
[2025-11-27 10:51:42] 2025-11-27 15:50:51,773 | INFO     | mean y: 2902103.8592870543
[2025-11-27 10:51:42] 2025-11-27 15:50:51,773 | INFO     | intersect: -12038451847.84684
[2025-11-27 10:51:42] 2025-11-27 15:50:51,774 | INFO     | chi2: 23.614116771424687
[2025-11-27 10:51:42] 2025-11-27 15:50:51,774 | INFO     | current chi2=23.614116771424687 (change=11.925783524496794 %)
[2025-11-27 10:51:42] 2025-11-27 15:50:51,774 | INFO     | right removable region: 1065
[2025-11-27 10:51:42] 2025-11-27 15:50:51,774 | INFO     | sum of square deviations: 375606042925.39307
[2025-11-27 10:51:42] 2025-11-27 15:50:51,800 | INFO     | sum of deviations: 1769486939268.1863
[2025-11-27 10:51:42] 2025-11-27 15:50:51,800 | INFO     | mean x: 1764226061.8714821
[2025-11-27 10:51:42] 2025-11-27 15:50:51,800 | INFO     | mean y: 2904887.015947467
[2025-11-27 10:51:42] 2025-11-27 15:50:51,800 | INFO     | intersect: -8308396363.848686
[2025-11-27 10:51:42] 2025-11-27 15:50:51,805 | INFO     | chi2: 22.394057585936725
[2025-11-27 10:51:42] 2025-11-27 15:50:51,805 | INFO     | current chi2=22.394057585936725 (change=16.476271601426458 %)
[2025-11-27 10:51:42] 2025-11-27 15:50:51,805 | INFO     | left removable region: 10
[2025-11-27 10:51:42] 2025-11-27 15:50:51,805 | INFO     | sum of square deviations: 364097730128.3848
[2025-11-27 10:51:42] 2025-11-27 15:50:51,832 | INFO     | sum of deviations: 1779694120206.6157
[2025-11-27 10:51:42] 2025-11-27 15:50:51,833 | INFO     | mean x: 1764226031.3962085
[2025-11-27 10:51:42] 2025-11-27 15:50:51,833 | INFO     | mean y: 2928770.5535545023
[2025-11-27 10:51:42] 2025-11-27 15:50:51,833 | INFO     | intersect: -8620532555.844067
[2025-11-27 10:51:42] 2025-11-27 15:50:51,833 | INFO     | chi2: 15.048412010513255
[2025-11-27 10:51:42] 2025-11-27 15:50:51,833 | INFO     | current memory leak: 4.89 B/s (using 1055 data points, chi2=15.05)
[2025-11-27 10:51:42] 2025-11-27 15:50:51,834 | INFO     | could have reported an average CPU frequency of 3746 MHz (39 samples)
[2025-11-27 10:51:42] 2025-11-27 15:50:51,834 | INFO     | ..............................
[2025-11-27 10:51:42] 2025-11-27 15:50:51,834 | INFO     | . Timing measurements:
[2025-11-27 10:51:42] 2025-11-27 15:50:51,834 | INFO     | . get job = 0 s
[2025-11-27 10:51:42] 2025-11-27 15:50:51,838 | INFO     | . initial setup = 5 s
[2025-11-27 10:51:42] 2025-11-27 15:50:51,838 | INFO     | . payload setup = 49 s
[2025-11-27 10:51:42] 2025-11-27 15:50:51,839 | INFO     | . stage-in = 0 s
[2025-11-27 10:51:42] 2025-11-27 15:50:51,839 | INFO     | . payload execution = 65364 s
[2025-11-27 10:51:42] 2025-11-27 15:50:51,839 | INFO     | . stage-out = 9 s
[2025-11-27 10:51:42] 2025-11-27 15:50:51,839 | INFO     | . log creation = 2 s
[2025-11-27 10:51:42] 2025-11-27 15:50:51,839 | INFO     | ..............................
[2025-11-27 10:51:42] 2025-11-27 15:50:51,944 | INFO     | 
[2025-11-27 10:51:42] 2025-11-27 15:50:51,944 | INFO     | job summary report
[2025-11-27 10:51:42] 2025-11-27 15:50:51,944 | INFO     | --------------------------------------------------
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | PanDA job id: 6892525415
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | task id: 47493029
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | errors: (none)
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | pilot state: finished 
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | transexitcode: 0
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | exeerrorcode: 0
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | exeerrordiag: 
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | exitcode: 0
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | exitmsg: OK
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | cpuconsumptiontime: 147669 s
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | nevents: 1000
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | neventsw: 0
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | pid: 3717784
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | pgrp: 3717784
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | corecount: 8
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | event service: False
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | sizes: {0: 2284129, 1: 2284328, 12: 2284328, 23: 2284356, 29: 2284646, 34: 2284674, 65415: 2339632, 65426: 2348682, 65464: 2348872}
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | --------------------------------------------------
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | 
[2025-11-27 10:51:42] 2025-11-27 15:50:51,945 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 10:51:42] 2025-11-27 15:50:52,149 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,151 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:51:42] 2025-11-27 15:50:52,152 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,152 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:51:42] 2025-11-27 15:50:52,152 | INFO     | job 6892525415 has completed (purged errors)
[2025-11-27 10:51:42] 2025-11-27 15:50:52,152 | INFO     | overall cleanup function is called
[2025-11-27 10:51:42] 2025-11-27 15:50:53,173 | INFO     | --- collectZombieJob: --- 10, [3717784]
[2025-11-27 10:51:42] 2025-11-27 15:50:53,174 | INFO     | zombie collector waiting for pid 3717784
[2025-11-27 10:51:42] 2025-11-27 15:50:53,174 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:51:42] 2025-11-27 15:50:53,174 | INFO     | collected zombie processes
[2025-11-27 10:51:42] 2025-11-27 15:50:53,174 | INFO     | will attempt to kill all subprocesses of pid=3717784
[2025-11-27 10:51:42] 2025-11-27 15:50:54,069 | INFO     | process IDs to be killed: [3717784] (in reverse order)
[2025-11-27 10:51:42] 2025-11-27 15:50:54,666 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:51:42] 2025-11-27 15:50:54,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:51:42] 2025-11-27 15:50:54,689 | INFO     | did not find any defunct processes belonging to 3717784
[2025-11-27 10:51:42] 2025-11-27 15:50:54,710 | INFO     | did not find any defunct processes belonging to 3717784
[2025-11-27 10:51:42] 2025-11-27 15:50:54,722 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:51:42] 2025-11-27 15:50:54,722 | INFO     | ready for new job
[2025-11-27 10:51:42] 2025-11-27 15:50:54,727 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:51:42] 2025-11-27 15:50:54,738 | INFO     | ***************************************
[2025-11-27 10:51:42] 2025-11-27 15:50:54,738 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:51:42] 2025-11-27 15:50:54,738 | INFO     | ***************************************
[2025-11-27 10:51:42] 2025-11-27 15:50:54,738 | INFO     | 
[2025-11-27 10:51:42] 2025-11-27 15:50:54,747 | INFO     | architecture information:
[2025-11-27 10:51:42] 2025-11-27 15:50:54,751 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:51:42] 2025-11-27 15:50:54,875 | INFO     | cat /etc/os-release:
[2025-11-27 10:51:42] NAME="CentOS Linux"
[2025-11-27 10:51:42] VERSION="7 (Core)"
[2025-11-27 10:51:42] ID="centos"
[2025-11-27 10:51:42] ID_LIKE="rhel fedora"
[2025-11-27 10:51:42] VERSION_ID="7"
[2025-11-27 10:51:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:51:42] ANSI_COLOR="0;31"
[2025-11-27 10:51:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:51:42] HOME_URL="https://www.centos.org/"
[2025-11-27 10:51:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:51:42] 
[2025-11-27 10:51:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:51:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:51:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:51:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:51:42] 
[2025-11-27 10:51:42] 2025-11-27 15:50:54,875 | INFO     | ***************************************
[2025-11-27 10:51:42] 2025-11-27 15:50:55,379 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 10:51:42] 2025-11-27 15:50:55,475 | INFO     | sufficient remaining disk space (162154938368 B)
[2025-11-27 10:51:42] 2025-11-27 15:50:55,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:51:42] 2025-11-27 15:50:55,475 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:51:42] 2025-11-27 15:50:55,475 | INFO     | update_server=False
[2025-11-27 10:51:42] 2025-11-27 15:50:55,475 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:51:42] 2025-11-27 15:50:55,476 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:51:42] 2025-11-27 15:50:55,476 | INFO     | aborting loop
[2025-11-27 10:51:42] 2025-11-27 15:50:56,102 | INFO     | all payload control threads have been joined
[2025-11-27 10:51:42] 2025-11-27 15:50:56,339 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:51:42] 2025-11-27 15:50:56,475 | INFO     | all data control threads have been joined
[2025-11-27 10:51:42] 2025-11-27 15:50:56,485 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:56,485 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:56,505 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:56,892 | INFO     | all job control threads have been joined
[2025-11-27 10:51:42] 2025-11-27 15:50:56,945 | INFO     | [job] validate thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:56,957 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:51:42] 2025-11-27 15:50:56,958 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:51:42] 2025-11-27 15:50:57,016 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:57,108 | INFO     | [payload] control thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:57,203 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:57,460 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:57,461 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:57,481 | INFO     | [data] control thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:57,747 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:57,851 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:57,899 | INFO     | [job] control thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:57,963 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:50:58,964 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:51:00,348 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:51:42] 2025-11-27 15:51:27,512 | INFO     | PID=3706061 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:51:42] 2025-11-27 15:51:27,512 | INFO     | .. there are 31 such processes running
[2025-11-27 10:51:42] 2025-11-27 15:51:27,512 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:51:42] 2025-11-27 15:51:27,512 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:51:42] 2025-11-27 15:51:27,512 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:51:42] 2025-11-27 15:51:32,830 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:51:42] 2025-11-27 15:51:34,467 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139700732761920)>', '<ExcThread(monitor, started 139700085962496)>']
[2025-11-27 10:51:42] 2025-11-27 15:51:34,556 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:51:42] 2025-11-27 15:51:34,556 | INFO     | [monitor] control thread has ended
[2025-11-27 10:51:42] 2025-11-27 15:51:39,493 | INFO     | all workflow threads have been joined
[2025-11-27 10:51:42] 2025-11-27 15:51:39,494 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:51:42] 2025-11-27 15:51:39,494 | INFO     | traces error code: 0
[2025-11-27 10:51:42] 2025-11-27 15:51:39,497 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:51:42] 2025-11-27 15:51:40,419 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:51:42] 2025-11-27 15:51:40,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:51:42] 2025-11-27 15:51:40,536 [wrapper] pilotpid: 3706061
[2025-11-27 10:51:42] 2025-11-27 15:51:40,579 [wrapper] Pilot exit status: 0
[2025-11-27 10:51:42] 2025-11-27 15:51:40,684 [wrapper] pandaids: 6892525415
[2025-11-27 10:51:42] 2025-11-27 15:51:41,197 [wrapper] cleanup supervisor_pilot 4015590 3706062
[2025-11-27 10:51:42] 2025-11-27 15:51:41,247 [wrapper] Test setup, not cleaning
[2025-11-27 10:51:42] 2025-11-27 15:51:41,289 [wrapper] apfmon messages muted
[2025-11-27 10:51:42] 2025-11-27 15:51:41,309 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:51:42] 2025-11-27 15:51:41,351 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:51:42]  *** Error codes and diagnostics ***
[2025-11-27 10:51:42]     "exeErrorCode": 0,
[2025-11-27 10:51:42]     "exeErrorDiag": "",
[2025-11-27 10:51:42]     "pilotErrorCode": 0,
[2025-11-27 10:51:42]     "pilotErrorDiag": "",
[2025-11-27 10:51:42]  *** Listing of results directory ***
[2025-11-27 10:51:42] total 1320876
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 02:00 pilot3.tar.gz
[2025-11-27 10:51:42] -rwx------. 1 boincer umatlas     36292 Nov 19 02:09 runpilot2-wrapper.sh
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 02:10 queuedata.json
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas       100 Nov 26 16:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:51:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 16:37 run_atlas
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas       105 Nov 26 16:37 job.xml
[2025-11-27 10:51:42] -rw-r--r--. 2 boincer umatlas 411351781 Nov 26 16:37 EVNT.47493027._000092.pool.root.1
[2025-11-27 10:51:42] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 16:37 start_atlas.sh
[2025-11-27 10:51:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 16:37 shared
[2025-11-27 10:51:42] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 16:37 input.tar.gz
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas         0 Nov 26 16:37 boinc_lockfile
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas      2771 Nov 26 16:37 pandaJob.out
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas    991538 Nov 26 16:38 agis_schedconf.cvmfs.json
[2025-11-27 10:51:42] drwx------. 5 boincer umatlas      4096 Nov 26 16:38 pilot3
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:20 boinc_task_state.xml
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas      7176 Nov 27 10:45 init_data.xml
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas 916825087 Nov 27 10:48 HITS.47493029._000875.pool.root.1
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas      1079 Nov 27 10:50 memory_monitor_summary.json
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:50 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas   2169993 Nov 27 10:50 log.47493029._000875.job.log.tgz.1
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas        95 Nov 27 10:50 pilot_heartbeat.json
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas      8636 Nov 27 10:50 heartbeat.json
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas      4825 Nov 27 10:51 pilotlog.txt
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:51 boinc_mmap_file
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas        29 Nov 27 10:51 wrapper_checkpoint.txt
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas   8069589 Nov 27 10:51 log.47493029._000875.job.log.1
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas       353 Nov 27 10:51 output.list
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:51 runtime_log
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas  10260480 Nov 27 10:51 result.tar.gz
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas      8704 Nov 27 10:51 runtime_log.err
[2025-11-27 10:51:42] -rw-------. 1 boincer umatlas       666 Nov 27 10:51 Hq2MDmIVrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4hGKDm78oOtn.diag
[2025-11-27 10:51:42] -rw-r--r--. 1 boincer umatlas     21795 Nov 27 10:51 stderr.txt
[2025-11-27 10:51:43] HITS file was successfully produced:
[2025-11-27 10:51:43] -rw-------. 1 boincer umatlas 916825087 Nov 27 10:48 shared/HITS.pool.root.1
[2025-11-27 10:51:43]  *** Contents of shared directory: ***
[2025-11-27 10:51:43] total 1307676
[2025-11-27 10:51:43] -rw-r--r--. 2 boincer umatlas 411351781 Nov 26 16:37 ATLAS.root_0
[2025-11-27 10:51:43] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 16:37 start_atlas.sh
[2025-11-27 10:51:43] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 16:37 input.tar.gz
[2025-11-27 10:51:43] -rw-------. 1 boincer umatlas 916825087 Nov 27 10:48 HITS.pool.root.1
[2025-11-27 10:51:43] -rw-------. 1 boincer umatlas  10260480 Nov 27 10:51 result.tar.gz
10:51:44 (3700596): run_atlas exited; CPU time 148511.095126
10:51:44 (3700596): called boinc_finish(0)

</stderr_txt>
]]>

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