Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:42:18 (24256): wrapper (7.7.26015): starting
16:42:18 (24256): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:42:18] Arguments: --nthreads 8
[2025-11-26 16:42:18] Threads: 8
[2025-11-26 16:42:18] Checking for CVMFS
[2025-11-26 16:42:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:42:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:42:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:42:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:42:19] 2.11.2.0 5524 118238 137564 153335 0 90 15726880 18432000 1885 130560 0 86510066 99.975 5008593 32741 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 16:42:19] CVMFS is ok
[2025-11-26 16:42:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:42:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:42:19] Further information can be found at the LHC@home message board.
[2025-11-26 16:42:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:42:19] Checking for apptainer binary...
[2025-11-26 16:42:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:42:19] Running /usr/bin/apptainer --version
[2025-11-26 16:42:19] apptainer version 1.3.2-1.el7
[2025-11-26 16:42:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:42:19] c-206-5.aglt2.org
[2025-11-26 16:42:19] apptainer works
[2025-11-26 16:42:19] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:42:19] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:42:19] Starting ATLAS job with PandaID=6896420914
[2025-11-26 16:42:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:46:26 (6338): wrapper (7.7.26015): starting
07:46:26 (6338): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 07:46:26] Arguments: --nthreads 8
[2025-11-27 07:46:26] Threads: 8
[2025-11-27 07:46:26] This job has been restarted, cleaning up previous attempt
[2025-11-27 07:46:26] Checking for CVMFS
[2025-11-27 07:46:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:46:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:46:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:46:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:46:27] 2.11.2.0 5524 119143 135032 153364 1 56 15952119 18432001 1 130560 0 87266495 99.975 5046760 32763 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 07:46:27] CVMFS is ok
[2025-11-27 07:46:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:46:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:46:27] Further information can be found at the LHC@home message board.
[2025-11-27 07:46:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:46:27] Checking for apptainer binary...
[2025-11-27 07:46:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:46:27] Running /usr/bin/apptainer --version
[2025-11-27 07:46:27] apptainer version 1.3.2-1.el7
[2025-11-27 07:46:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:46:28] c-206-5.aglt2.org
[2025-11-27 07:46:28] apptainer works
[2025-11-27 07:46:28] Set ATHENA_PROC_NUMBER=8
[2025-11-27 07:46:28] Set ATHENA_CORE_NUMBER=8
[2025-11-27 07:46:28] Starting ATLAS job with PandaID=6896420914
[2025-11-27 07:46:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:49:57]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:49:57] 2025-11-28 07:49:23,661 | INFO     | time since job start (68562s) is within the limit (172800.0s)
[2025-11-28 02:49:57] 2025-11-28 07:49:23,662 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:49:57] 2025-11-28 07:49:23,663 | INFO     | sum of square deviations: 440329029874.8781
[2025-11-28 02:49:57] 2025-11-28 07:49:23,698 | INFO     | sum of deviations: 2037320536607.3362
[2025-11-28 02:49:57] 2025-11-28 07:49:23,698 | INFO     | mean x: 1764281880.3158362
[2025-11-28 02:49:57] 2025-11-28 07:49:23,698 | INFO     | mean y: 2861515.644128114
[2025-11-28 02:49:57] 2025-11-28 07:49:23,698 | INFO     | intersect: -8160142654.562478
[2025-11-28 02:49:57] 2025-11-28 07:49:23,700 | INFO     | chi2: 6.210873536721255
[2025-11-28 02:49:57] 2025-11-28 07:49:23,702 | INFO     | sum of square deviations: 434479134751.5352
[2025-11-28 02:49:57] 2025-11-28 07:49:23,728 | INFO     | sum of deviations: 2392422759617.0317
[2025-11-28 02:49:57] 2025-11-28 07:49:23,728 | INFO     | mean x: 1764281727.8194816
[2025-11-28 02:49:57] 2025-11-28 07:49:23,728 | INFO     | mean y: 2870768.5397676495
[2025-11-28 02:49:57] 2025-11-28 07:49:23,729 | INFO     | intersect: -9711997961.406473
[2025-11-28 02:49:57] 2025-11-28 07:49:23,729 | INFO     | chi2: 3.2570227264870564
[2025-11-28 02:49:57] 2025-11-28 07:49:23,730 | INFO     | current chi2=3.2570227264870564 (change=47.55934560202861 %)
[2025-11-28 02:49:57] 2025-11-28 07:49:23,731 | INFO     | sum of square deviations: 428681287115.66266
[2025-11-28 02:49:57] 2025-11-28 07:49:23,752 | INFO     | sum of deviations: 2572860373017.5664
[2025-11-28 02:49:57] 2025-11-28 07:49:23,752 | INFO     | mean x: 1764281575.3231597
[2025-11-28 02:49:57] 2025-11-28 07:49:23,753 | INFO     | mean y: 2875513.31508079
[2025-11-28 02:49:57] 2025-11-28 07:49:23,753 | INFO     | intersect: -10585993859.863852
[2025-11-28 02:49:57] 2025-11-28 07:49:23,754 | INFO     | chi2: 2.4073116741983083
[2025-11-28 02:49:57] 2025-11-28 07:49:23,754 | INFO     | current chi2=2.4073116741983083 (change=26.088582231209216 %)
[2025-11-28 02:49:57] 2025-11-28 07:49:23,755 | INFO     | sum of square deviations: 422935050910.71234
[2025-11-28 02:49:57] 2025-11-28 07:49:23,776 | INFO     | sum of deviations: 2599041292288.102
[2025-11-28 02:49:57] 2025-11-28 07:49:23,777 | INFO     | mean x: 1764281422.8241658
[2025-11-28 02:49:57] 2025-11-28 07:49:23,777 | INFO     | mean y: 2876205.518485122
[2025-11-28 02:49:57] 2025-11-28 07:49:23,777 | INFO     | intersect: -10839072834.323244
[2025-11-28 02:49:57] 2025-11-28 07:49:23,778 | INFO     | chi2: 2.3091112757501646
[2025-11-28 02:49:57] 2025-11-28 07:49:23,778 | INFO     | current chi2=2.3091112757501646 (change=4.079255690098654 %)
[2025-11-28 02:49:57] 2025-11-28 07:49:23,778 | INFO     | right removable region: 1108
[2025-11-28 02:49:57] 2025-11-28 07:49:23,779 | INFO     | sum of square deviations: 434478643702.1734
[2025-11-28 02:49:57] 2025-11-28 07:49:23,805 | INFO     | sum of deviations: 1762056776853.2043
[2025-11-28 02:49:57] 2025-11-28 07:49:23,805 | INFO     | mean x: 1764282032.818588
[2025-11-28 02:49:57] 2025-11-28 07:49:23,805 | INFO     | mean y: 2868681.1537086684
[2025-11-28 02:49:57] 2025-11-28 07:49:23,805 | INFO     | intersect: -7152293390.147863
[2025-11-28 02:49:57] 2025-11-28 07:49:23,807 | INFO     | chi2: 4.247967093812542
[2025-11-28 02:49:57] 2025-11-28 07:49:23,807 | INFO     | current chi2=4.247967093812542 (change=31.60435374031041 %)
[2025-11-28 02:49:57] 2025-11-28 07:49:23,809 | INFO     | sum of square deviations: 428680441536.2338
[2025-11-28 02:49:57] 2025-11-28 07:49:23,845 | INFO     | sum of deviations: 1674709078518.6008
[2025-11-28 02:49:57] 2025-11-28 07:49:23,845 | INFO     | mean x: 1764282185.319569
[2025-11-28 02:49:57] 2025-11-28 07:49:23,845 | INFO     | mean y: 2870978.0825852784
[2025-11-28 02:49:57] 2025-11-28 07:49:23,845 | INFO     | intersect: -6889581083.02592
[2025-11-28 02:49:57] 2025-11-28 07:49:23,846 | INFO     | chi2: 4.161544132968667
[2025-11-28 02:49:57] 2025-11-28 07:49:23,846 | INFO     | current chi2=4.161544132968667 (change=2.034454574042146 %)
[2025-11-28 02:49:57] 2025-11-28 07:49:23,846 | INFO     | left removable region: 20
[2025-11-28 02:49:57] 2025-11-28 07:49:23,847 | INFO     | sum of square deviations: 399360924473.16785
[2025-11-28 02:49:57] 2025-11-28 07:49:23,868 | INFO     | sum of deviations: 2103192034304.3499
[2025-11-28 02:49:57] 2025-11-28 07:49:23,868 | INFO     | mean x: 1764282002.3262868
[2025-11-28 02:49:57] 2025-11-28 07:49:23,868 | INFO     | mean y: 2889359.4806985296
[2025-11-28 02:49:57] 2025-11-28 07:49:23,868 | INFO     | intersect: -9288515047.332977
[2025-11-28 02:49:57] 2025-11-28 07:49:23,869 | INFO     | chi2: 0.18869579400898048
[2025-11-28 02:49:57] 2025-11-28 07:49:23,869 | INFO     | current memory leak: 5.27 B/s (using 1088 data points, chi2=0.19)
[2025-11-28 02:49:57] 2025-11-28 07:49:23,870 | INFO     | could have reported an average CPU frequency of 2575 MHz (41 samples)
[2025-11-28 02:49:57] 2025-11-28 07:49:23,870 | INFO     | ..............................
[2025-11-28 02:49:57] 2025-11-28 07:49:23,870 | INFO     | . Timing measurements:
[2025-11-28 02:49:57] 2025-11-28 07:49:23,871 | INFO     | . get job = 0 s
[2025-11-28 02:49:57] 2025-11-28 07:49:23,871 | INFO     | . initial setup = 2 s
[2025-11-28 02:49:57] 2025-11-28 07:49:23,871 | INFO     | . payload setup = 6 s
[2025-11-28 02:49:57] 2025-11-28 07:49:23,871 | INFO     | . stage-in = 0 s
[2025-11-28 02:49:57] 2025-11-28 07:49:23,871 | INFO     | . payload execution = 68524 s
[2025-11-28 02:49:57] 2025-11-28 07:49:23,871 | INFO     | . stage-out = 4 s
[2025-11-28 02:49:57] 2025-11-28 07:49:23,871 | INFO     | . log creation = 0 s
[2025-11-28 02:49:57] 2025-11-28 07:49:23,871 | INFO     | ..............................
[2025-11-28 02:49:57] 2025-11-28 07:49:23,977 | INFO     | 
[2025-11-28 02:49:57] 2025-11-28 07:49:23,977 | INFO     | job summary report
[2025-11-28 02:49:57] 2025-11-28 07:49:23,977 | INFO     | --------------------------------------------------
[2025-11-28 02:49:57] 2025-11-28 07:49:23,977 | INFO     | PanDA job id: 6896420914
[2025-11-28 02:49:57] 2025-11-28 07:49:23,977 | INFO     | task id: 47556161
[2025-11-28 02:49:57] 2025-11-28 07:49:23,978 | INFO     | errors: (none)
[2025-11-28 02:49:57] 2025-11-28 07:49:23,978 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:49:57] 2025-11-28 07:49:23,978 | INFO     | pilot state: finished 
[2025-11-28 02:49:57] 2025-11-28 07:49:23,978 | INFO     | transexitcode: 0
[2025-11-28 02:49:57] 2025-11-28 07:49:23,978 | INFO     | exeerrorcode: 0
[2025-11-28 02:49:57] 2025-11-28 07:49:23,978 | INFO     | exeerrordiag: 
[2025-11-28 02:49:57] 2025-11-28 07:49:23,978 | INFO     | exitcode: 0
[2025-11-28 02:49:57] 2025-11-28 07:49:23,978 | INFO     | exitmsg: OK
[2025-11-28 02:49:57] 2025-11-28 07:49:23,978 | INFO     | cpuconsumptiontime: 535555 s
[2025-11-28 02:49:57] 2025-11-28 07:49:23,978 | INFO     | nevents: 1000
[2025-11-28 02:49:57] 2025-11-28 07:49:23,979 | INFO     | neventsw: 0
[2025-11-28 02:49:57] 2025-11-28 07:49:23,979 | INFO     | pid: 5352
[2025-11-28 02:49:57] 2025-11-28 07:49:23,979 | INFO     | pgrp: 5352
[2025-11-28 02:49:57] 2025-11-28 07:49:23,979 | INFO     | corecount: 8
[2025-11-28 02:49:57] 2025-11-28 07:49:23,979 | INFO     | event service: False
[2025-11-28 02:49:57] 2025-11-28 07:49:23,979 | INFO     | sizes: {0: 2284262, 4: 2284524, 11: 2284552, 68535: 2340415, 68541: 2349409, 68543: 2349465, 68547: 2349935}
[2025-11-28 02:49:57] 2025-11-28 07:49:23,979 | INFO     | --------------------------------------------------
[2025-11-28 02:49:57] 2025-11-28 07:49:23,979 | INFO     | 
[2025-11-28 02:49:57] 2025-11-28 07:49:23,979 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 02:49:57] 2025-11-28 07:49:24,002 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,002 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,003 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,003 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,003 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,003 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,003 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,003 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,005 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,005 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,005 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,005 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:49:57] 2025-11-28 07:49:24,005 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,005 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:49:57] 2025-11-28 07:49:24,006 | INFO     | job 6896420914 has completed (purged errors)
[2025-11-28 02:49:57] 2025-11-28 07:49:24,006 | INFO     | overall cleanup function is called
[2025-11-28 02:49:57] 2025-11-28 07:49:25,022 | INFO     | --- collectZombieJob: --- 10, [5352]
[2025-11-28 02:49:57] 2025-11-28 07:49:25,022 | INFO     | zombie collector waiting for pid 5352
[2025-11-28 02:49:57] 2025-11-28 07:49:25,023 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:49:57] 2025-11-28 07:49:25,023 | INFO     | collected zombie processes
[2025-11-28 02:49:57] 2025-11-28 07:49:25,023 | INFO     | will attempt to kill all subprocesses of pid=5352
[2025-11-28 02:49:57] 2025-11-28 07:49:25,193 | INFO     | process IDs to be killed: [5352] (in reverse order)
[2025-11-28 02:49:57] 2025-11-28 07:49:25,263 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:49:57] 2025-11-28 07:49:25,263 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:49:57] 2025-11-28 07:49:25,268 | INFO     | did not find any defunct processes belonging to 5352
[2025-11-28 02:49:57] 2025-11-28 07:49:25,273 | INFO     | did not find any defunct processes belonging to 5352
[2025-11-28 02:49:57] 2025-11-28 07:49:25,275 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:49:57] 2025-11-28 07:49:25,275 | INFO     | ready for new job
[2025-11-28 02:49:57] 2025-11-28 07:49:25,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:49:57] 2025-11-28 07:49:25,281 | INFO     | ***************************************
[2025-11-28 02:49:57] 2025-11-28 07:49:25,281 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:49:57] 2025-11-28 07:49:25,281 | INFO     | ***************************************
[2025-11-28 02:49:57] 2025-11-28 07:49:25,281 | INFO     | 
[2025-11-28 02:49:57] 2025-11-28 07:49:25,282 | INFO     | architecture information:
[2025-11-28 02:49:57] 2025-11-28 07:49:25,283 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:49:57] 2025-11-28 07:49:25,296 | INFO     | cat /etc/os-release:
[2025-11-28 02:49:57] NAME="CentOS Linux"
[2025-11-28 02:49:57] VERSION="7 (Core)"
[2025-11-28 02:49:57] ID="centos"
[2025-11-28 02:49:57] ID_LIKE="rhel fedora"
[2025-11-28 02:49:57] VERSION_ID="7"
[2025-11-28 02:49:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:49:57] ANSI_COLOR="0;31"
[2025-11-28 02:49:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:49:57] HOME_URL="https://www.centos.org/"
[2025-11-28 02:49:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:49:57] 
[2025-11-28 02:49:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:49:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:49:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:49:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:49:57] 
[2025-11-28 02:49:57] 2025-11-28 07:49:25,296 | INFO     | ***************************************
[2025-11-28 02:49:57] 2025-11-28 07:49:25,799 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 02:49:57] 2025-11-28 07:49:25,821 | INFO     | sufficient remaining disk space (24581767168 B)
[2025-11-28 02:49:57] 2025-11-28 07:49:25,821 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:49:57] 2025-11-28 07:49:25,822 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:49:57] 2025-11-28 07:49:25,822 | INFO     | update_server=False
[2025-11-28 02:49:57] 2025-11-28 07:49:25,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:49:57] 2025-11-28 07:49:25,822 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:49:57] 2025-11-28 07:49:25,823 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:49:57] 2025-11-28 07:49:25,823 | INFO     | aborting loop
[2025-11-28 02:49:57] 2025-11-28 07:49:25,823 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:49:57] 2025-11-28 07:49:26,198 | INFO     | all data control threads have been joined
[2025-11-28 02:49:57] 2025-11-28 07:49:26,226 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:49:57] 2025-11-28 07:49:26,552 | INFO     | all job control threads have been joined
[2025-11-28 02:49:57] 2025-11-28 07:49:26,601 | INFO     | all payload control threads have been joined
[2025-11-28 02:49:57] 2025-11-28 07:49:26,827 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:26,828 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:26,828 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:27,203 | INFO     | [data] control thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:27,215 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:27,544 | INFO     | [job] validate thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:27,558 | INFO     | [job] control thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:27,565 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:27,567 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:27,570 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:27,607 | INFO     | [payload] control thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:27,720 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:27,829 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:28,169 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:30,235 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:34,918 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:49:57] 2025-11-28 07:49:36,181 | INFO     | job.realtimelogging is not enabled
[2025-11-28 02:49:57] 2025-11-28 07:49:37,186 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:49:57] 2025-11-28 07:49:38,267 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140425721972544)>', '<ExcThread(monitor, started 140425130129152)>']
[2025-11-28 02:49:57] 2025-11-28 07:49:43,293 | INFO     | all workflow threads have been joined
[2025-11-28 02:49:57] 2025-11-28 07:49:43,293 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:49:57] 2025-11-28 07:49:43,294 | INFO     | traces error code: 0
[2025-11-28 02:49:57] 2025-11-28 07:49:43,294 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:49:57] 2025-11-28 07:49:56,891 | INFO     | PID=18462 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 02:49:57] 2025-11-28 07:49:56,891 | INFO     | .. there are 3 such processes running
[2025-11-28 02:49:57] 2025-11-28 07:49:56,892 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:49:57] 2025-11-28 07:49:56,892 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:49:57] 2025-11-28 07:49:56,892 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:49:57] 2025-11-28 07:49:56,892 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:49:57] 2025-11-28 07:49:56,893 | INFO     | [monitor] control thread has ended
[2025-11-28 02:49:57] 2025-11-28 07:49:56,981 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:49:57] 2025-11-28 07:49:56,984 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:49:57] 2025-11-28 07:49:56,986 [wrapper] pilotpid: 18462
[2025-11-28 02:49:57] 2025-11-28 07:49:56,989 [wrapper] Pilot exit status: 0
[2025-11-28 02:49:57] 2025-11-28 07:49:57,001 [wrapper] pandaids: 6896420914 6896420914
[2025-11-28 02:49:57] 2025-11-28 07:49:57,042 [wrapper] cleanup supervisor_pilot  9633 18463
[2025-11-28 02:49:57] 2025-11-28 07:49:57,048 [wrapper] Test setup, not cleaning
[2025-11-28 02:49:57] 2025-11-28 07:49:57,051 [wrapper] apfmon messages muted
[2025-11-28 02:49:57] 2025-11-28 07:49:57,053 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:49:57] 2025-11-28 07:49:57,055 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:49:57]  *** Error codes and diagnostics ***
[2025-11-28 02:49:57]     "exeErrorCode": 0,
[2025-11-28 02:49:57]     "exeErrorDiag": "",
[2025-11-28 02:49:57]     "pilotErrorCode": 0,
[2025-11-28 02:49:57]     "pilotErrorDiag": "",
[2025-11-28 02:49:57]  *** Listing of results directory ***
[2025-11-28 02:49:57] total 1718752
[2025-11-28 02:49:57] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 21:13 pilot3.tar.gz
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 21:56 queuedata.json
[2025-11-28 02:49:57] -rwx------ 1 boincer umatlas     36292 Nov 24 21:56 runpilot2-wrapper.sh
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas       100 Nov 26 16:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:49:57] -rwxr-xr-x 1 boincer umatlas      7986 Nov 26 16:42 run_atlas
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas       105 Nov 26 16:42 job.xml
[2025-11-28 02:49:57] -rw-r--r-- 3 boincer umatlas 407968357 Nov 26 16:42 EVNT.47483658._002076.pool.root.1
[2025-11-28 02:49:57] -rw-r--r-- 3 boincer umatlas 407968357 Nov 26 16:42 ATLAS.root_0
[2025-11-28 02:49:57] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 16:42 start_atlas.sh
[2025-11-28 02:49:57] drwxrwx--x 2 boincer umatlas      4096 Nov 26 16:42 shared
[2025-11-28 02:49:57] -rw-r--r-- 2 boincer umatlas    590101 Nov 26 16:42 input.tar.gz
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas         0 Nov 26 16:42 boinc_lockfile
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas      2784 Nov 27 07:46 pandaJob.out
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas        57 Nov 27 07:46 setup.sh.local
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas    991566 Nov 27 07:46 agis_schedconf.cvmfs.json
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas       534 Nov 28 02:36 boinc_task_state.xml
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas      5953 Nov 28 02:48 init_data.xml
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas 916605528 Nov 28 02:48 HITS.47556161._000592.pool.root.1
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas      1063 Nov 28 02:49 memory_monitor_summary.json
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas   1516240 Nov 28 02:49 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas   2292621 Nov 28 02:49 log.47556161._000592.job.log.tgz.1
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas      8675 Nov 28 02:49 heartbeat.json
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 02:49 boinc_mmap_file
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas        30 Nov 28 02:49 wrapper_checkpoint.txt
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas        96 Nov 28 02:49 pilot_heartbeat.json
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas       820 Nov 28 02:49 pilotlog.txt
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas   9476901 Nov 28 02:49 log.47556161._000592.job.log.1
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas       353 Nov 28 02:49 output.list
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas       620 Nov 28 02:49 runtime_log
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas  11786240 Nov 28 02:49 result.tar.gz
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas      9423 Nov 28 02:49 runtime_log.err
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas       792 Nov 28 02:49 JE8LDmePyh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuHJKDmr46S3n.diag
[2025-11-28 02:49:57] -rw-r--r-- 1 boincer umatlas     23239 Nov 28 02:49 stderr.txt
[2025-11-28 02:49:57] HITS file was successfully produced:
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas 916605528 Nov 28 02:48 shared/HITS.pool.root.1
[2025-11-28 02:49:57]  *** Contents of shared directory: ***
[2025-11-28 02:49:57] total 1305648
[2025-11-28 02:49:57] -rw-r--r-- 3 boincer umatlas 407968357 Nov 26 16:42 ATLAS.root_0
[2025-11-28 02:49:57] -rw-r--r-- 2 boincer umatlas     15847 Nov 26 16:42 start_atlas.sh
[2025-11-28 02:49:57] -rw-r--r-- 2 boincer umatlas    590101 Nov 26 16:42 input.tar.gz
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas 916605528 Nov 28 02:48 HITS.pool.root.1
[2025-11-28 02:49:57] -rw------- 1 boincer umatlas  11786240 Nov 28 02:49 result.tar.gz
02:49:59 (6338): run_atlas exited; CPU time 535063.907169
02:49:59 (6338): called boinc_finish(0)

</stderr_txt>
]]>

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