Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-01 03:13:47 (32112): vboxwrapper version 26210
2025-12-01 03:13:47 (32112): BOINC client version: 8.0.2
2025-12-01 03:13:47 (32112): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-12-01 03:13:48 (32112): Successfully copied 'init_data.xml' to the shared directory.
2025-12-01 03:13:48 (32112): Create VM. (boinc_d8c09491846e68e8, slot#3)
2025-12-01 03:13:48 (32112): Setting Memory Size for VM. (4800MB)
2025-12-01 03:13:49 (32112): Setting CPU Count for VM. (8)
2025-12-01 03:13:49 (32112): Setting Chipset Options for VM.
2025-12-01 03:13:49 (32112): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-01 03:13:50 (32112): Setting Boot Options for VM.
2025-12-01 03:13:50 (32112): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-01 03:13:50 (32112): Enabling VM Network Access.
2025-12-01 03:13:51 (32112): Disabling USB Support for VM.
2025-12-01 03:13:51 (32112): Disabling COM Port Support for VM.
2025-12-01 03:13:51 (32112): Disabling LPT Port Support for VM.
2025-12-01 03:13:51 (32112): Disabling Audio Support for VM.
2025-12-01 03:13:52 (32112): Disabling Clipboard Support for VM.
2025-12-01 03:13:52 (32112): Disabling Drag and Drop Support for VM.
2025-12-01 03:13:52 (32112): Adding storage controller(s) to VM.
2025-12-01 03:13:52 (32112): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-01 03:13:53 (32112): Adding VirtualBox Guest Additions to VM.
2025-12-01 03:13:53 (32112): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-01 03:13:53 (32112): forwarding host port 58712 to guest port 80
2025-12-01 03:13:54 (32112): Enabling remote desktop for VM.
2025-12-01 03:13:54 (32112): Required extension pack not installed, remote desktop not enabled.
2025-12-01 03:13:54 (32112): Enabling shared directory for VM.
2025-12-01 03:13:54 (32112): Starting VM using VBoxManage interface. (boinc_d8c09491846e68e8, slot#3)
2025-12-01 03:13:59 (32112): Successfully started VM. (PID = '6840')
2025-12-01 03:13:59 (32112): Reporting VM Process ID to BOINC.
2025-12-01 03:13:59 (32112): Guest Log: BIOS: VirtualBox 7.0.6
2025-12-01 03:13:59 (32112): Guest Log: CPUID EDX: 0x178bfbff
2025-12-01 03:13:59 (32112): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-01 03:13:59 (32112): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-01 03:13:59 (32112): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-01 03:13:59 (32112): Detected: Web Application Enabled (http://localhost:58712)
2025-12-01 03:13:59 (32112): Preference change detected
2025-12-01 03:13:59 (32112): Setting CPU throttle for VM. (50%)
2025-12-01 03:14:00 (32112): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-01 03:14:01 (32112): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-01 03:14:01 (32112): Guest Log: BIOS: Booting from Hard Disk...
2025-12-01 03:14:04 (32112): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-01 03:14:04 (32112): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-01 03:14:04 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-01 03:14:05 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-01 03:14:05 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-01 03:14:05 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-01 03:14:05 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-01 03:14:05 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-01 03:14:05 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-01 03:14:05 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-01 03:14:05 (32112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-01 03:14:05 (32112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-01 03:14:12 (32112): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-01 03:14:12 (32112): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-01 03:14:15 (32112): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-01 03:14:16 (32112): Guest Log: 00:00:00.000114 main     Log opened 2025-12-01T03:14:13.707985000Z
2025-12-01 03:14:16 (32112): Guest Log: 00:00:00.000186 main     OS Product: Linux
2025-12-01 03:14:16 (32112): Guest Log: 00:00:00.000205 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-01 03:14:16 (32112): Guest Log: 00:00:00.000220 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-01 03:14:16 (32112): Guest Log: 00:00:00.000235 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-01 03:14:16 (32112): Guest Log: 00:00:00.000235 main     Process ID: 1372
2025-12-01 03:14:16 (32112): Guest Log: 00:00:00.000236 main     Package type: LINUX_64BITS_GENERIC
2025-12-01 03:14:16 (32112): Guest Log: 00:00:00.000892 main     5.2.32 r132073 started. Verbose level = 0
2025-12-01 03:14:16 (32112): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-01 03:14:16 (32112): Guest Log: [INFO] Mounting shared directory
2025-12-01 03:14:16 (32112): Guest Log: [INFO] Checking for init_data.xml
2025-12-01 03:14:26 (32112): Guest Log: 00:00:10.005978 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 012 285 376 000ns (GuestNow=1 764 576 865 996 101 000 ns GuestLast=1 764 558 853 710 725 000 ns fSetTimeLastLoop=true )
2025-12-01 03:16:02 (32112): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-01 03:16:02 (32112): Guest Log: [INFO] Detected branch: prod
2025-12-01 03:16:02 (32112): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-01 03:16:02 (32112): Guest Log: Copying input files
2025-12-01 03:16:03 (32112): Guest Log: Copied input files into RunAtlas.
2025-12-01 03:16:03 (32112): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-12-01 03:16:03 (32112): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-12-01 03:16:03 (32112): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-12-01 03:16:03 (32112): Guest Log: Further information can be found at the LHC@home message board.
2025-12-01 03:17:05 (32112): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-01 03:17:05 (32112): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-01 03:17:05 (32112): Guest Log: 2.6.3.0 1679 1 32196 153511 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-12-01 03:17:05 (32112): Guest Log: copied the webapp to /var/www
2025-12-01 03:17:05 (32112): Guest Log: ATHENA_PROC_NUMBER=8
2025-12-01 03:17:05 (32112): Guest Log: ATHENA_CORE_NUMBER=8
2025-12-01 03:17:06 (32112): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-01 03:17:06 (32112): Guest Log:  *** Starting ATLAS job. (PandaID=6894238309 taskID=47523675) ***
2025-12-01 03:37:34 (32112): Guest Log:  *** Job finished ***
2025-12-01 03:37:34 (32112): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:20,090 | INFO     | all workflow threads have been joined
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:20,090 | INFO     | end of generic workflow (traces error code: 0)
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:20,090 | INFO     | traces error code: 0
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:20,090 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,124 | INFO     | PID=6149 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,125 | INFO     | found 0 job(s) in 20 queues
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,125 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,125 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,125 | INFO     | [monitor] control thread has ended
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,187 [wrapper] ==== pilot stdout END ====
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,190 [wrapper] ==== wrapper stdout RESUME ====
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,194 [wrapper] pilotpid: 6149
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,197 [wrapper] Pilot exit status: 0
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,269 [wrapper] pandaids: 6894238309
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,291 [wrapper] cleanup supervisor_pilot 20160 6150
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,295 [wrapper] Test setup, not cleaning
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,298 [wrapper] apfmon messages muted
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,301 [wrapper] ==== wrapper stdout END ====
2025-12-01 03:37:34 (32112): Guest Log: 2025-12-01 08:37:30,304 [wrapper] ==== wrapper stderr END ====
2025-12-01 03:37:34 (32112): Guest Log:  *** Error codes and diagnostics ***
2025-12-01 03:37:34 (32112): Guest Log:     "exeErrorCode": 0,
2025-12-01 03:37:34 (32112): Guest Log:     "exeErrorDiag": "",
2025-12-01 03:37:34 (32112): Guest Log:     "pilotErrorCode": 1305,
2025-12-01 03:37:34 (32112): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
2025-12-01 03:37:34 (32112): Guest Log:  *** Listing of results directory ***
2025-12-01 03:37:34 (32112): Guest Log: total 4636
2025-12-01 03:37:34 (32112): Guest Log: -rw-r--r--. 1 atlas atlas  576529 Nov 25 03:04 pilot3.tar.gz
2025-12-01 03:37:34 (32112): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Nov 25 03:56 queuedata.json
2025-12-01 03:37:34 (32112): Guest Log: -rwx------. 1 atlas atlas   36292 Nov 25 04:00 runpilot2-wrapper.sh
2025-12-01 03:37:34 (32112): Guest Log: -rwxr-xr-x. 1 atlas atlas    9004 Dec  1 08:16 init_data.xml
2025-12-01 03:37:34 (32112): Guest Log: -rwxr-xr-x. 1 atlas atlas  589945 Dec  1 08:16 input.tar.gz
2025-12-01 03:37:34 (32112): Guest Log: -rwxr-xr-x. 1 atlas atlas   15847 Dec  1 08:16 start_atlas.sh
2025-12-01 03:37:34 (32112): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Dec  1 08:16 EVNT.47523673._000004.pool.root.1 -> /data/./ATLAS.root_0
2025-12-01 03:37:34 (32112): Guest Log: -rw-r--r--. 1 atlas atlas    2614 Dec  1 08:17 pandaJob.out
2025-12-01 03:37:34 (32112): Guest Log: -rw-------. 1 atlas atlas  992513 Dec  1 08:19 agis_schedconf.cvmfs.json
2025-12-01 03:37:34 (32112): Guest Log: -rw-------. 1 atlas atlas 1516240 Dec  1 08:19 agis_ddmendpoints.agis.ALL.json
2025-12-01 03:37:34 (32112): Guest Log: drwx------. 5 atlas atlas    4096 Dec  1 08:19 pilot3
2025-12-01 03:37:34 (32112): Guest Log: -rw-------. 1 atlas atlas    1012 Dec  1 08:32 memory_monitor_summary.json
2025-12-01 03:37:34 (32112): Guest Log: -rw-------. 1 atlas atlas  248322 Dec  1 08:32 log.47523675._000089.job.log.tgz.1
2025-12-01 03:37:34 (32112): Guest Log: -rw-------. 1 atlas atlas    9655 Dec  1 08:36 heartbeat.json
2025-12-01 03:37:34 (32112): Guest Log: -rw-------. 1 atlas atlas      95 Dec  1 08:37 pilot_heartbeat.json
2025-12-01 03:37:34 (32112): Guest Log: -rw-------. 1 atlas atlas     744 Dec  1 08:37 pilotlog.txt
2025-12-01 03:37:34 (32112): Guest Log: -rw-------. 1 atlas atlas  205579 Dec  1 08:37 log.47523675._000089.job.log.1
2025-12-01 03:37:34 (32112): Guest Log: -rw-------. 1 atlas atlas     188 Dec  1 08:37 output.list
2025-12-01 03:37:34 (32112): Guest Log: -rw-r--r--. 1 atlas atlas     620 Dec  1 08:37 runtime_log
2025-12-01 03:37:34 (32112): Guest Log: -rw-------. 1 atlas atlas  471040 Dec  1 08:37 result.tar.gz
2025-12-01 03:37:34 (32112): Guest Log: -rw-------. 1 atlas atlas     644 Dec  1 08:37 zvnNDm2Ozh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNJJKDmDyPXpn.diag
2025-12-01 03:37:34 (32112): Guest Log: -rw-r--r--. 1 atlas atlas    8588 Dec  1 08:37 runtime_log.err
2025-12-01 03:37:34 (32112): Guest Log: Looking for outputfile HITS.47523675._000089.pool.root.1
2025-12-01 03:37:34 (32112): Guest Log: No HITS file was produced
2025-12-01 03:37:34 (32112): Guest Log: Successfully finished the ATLAS job!
2025-12-01 03:37:34 (32112): Guest Log: Copying the results back to the shared directory!
2025-12-01 03:37:34 (32112): Guest Log:  *** Contents of shared directory: ***
2025-12-01 03:37:34 (32112): Guest Log: total 276896
2025-12-01 03:37:34 (32112): Guest Log: -rwxrwxrwx. 1 root root 282444322 Dec  1 08:13 ATLAS.root_0
2025-12-01 03:37:34 (32112): Guest Log: -rwxrwxrwx. 1 root root      9004 Dec  1 08:13 init_data.xml
2025-12-01 03:37:34 (32112): Guest Log: -rwxrwxrwx. 1 root root    589945 Nov 26 21:36 input.tar.gz
2025-12-01 03:37:34 (32112): Guest Log: -rwxrwxrwx. 1 root root    471040 Dec  1 08:37 result.tar.gz
2025-12-01 03:37:34 (32112): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 26 21:36 start_atlas.sh
2025-12-01 03:37:34 (32112): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-01 03:37:34 (32112): VM Completion File Detected.
2025-12-01 03:37:34 (32112): Powering off VM.
2025-12-01 03:37:34 (32112): Successfully stopped VM.
2025-12-01 03:37:34 (32112): Deregistering VM. (boinc_d8c09491846e68e8, slot#3)
2025-12-01 03:37:34 (32112): Removing network bandwidth throttle group from VM.
2025-12-01 03:37:34 (32112): Removing VM from VirtualBox.
2025-12-01 03:37:40 (32112): called boinc_finish(0)

</stderr_txt>
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