Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:53:21 (3898160): wrapper (7.7.26015): starting
17:53:21 (3898160): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 17:53:21] Arguments: --nthreads 8
[2025-11-26 17:53:21] Threads: 8
[2025-11-26 17:53:21] Checking for CVMFS
[2025-11-26 17:53:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:53:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:53:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:53:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:53:22] 2.13.3.0 11502 30629 361404 153337 3 1118 21719571 32935936 60260 16776704 0 298746908 99.632 280872904 36639 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 17:53:22] CVMFS is ok
[2025-11-26 17:53:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:53:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:53:22] Further information can be found at the LHC@home message board.
[2025-11-26 17:53:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:53:22] Checking for apptainer binary...
[2025-11-26 17:53:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:53:22] Running /usr/bin/apptainer --version
[2025-11-26 17:53:22] apptainer version 1.4.4-1.el9
[2025-11-26 17:53:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:53:22] c7-2-15.aglt2.org
[2025-11-26 17:53:22] apptainer works
[2025-11-26 17:53:23] Set ATHENA_PROC_NUMBER=8
[2025-11-26 17:53:23] Set ATHENA_CORE_NUMBER=8
[2025-11-26 17:53:23] Starting ATLAS job with PandaID=6892534972
[2025-11-26 17:53:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:00:48]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:00:48] 2025-11-27 08:00:08,238 | INFO     | maximum number of monitored processes: 16
[2025-11-27 03:00:48] 2025-11-27 08:00:09,870 | INFO     | time since job start (32785s) is within the limit (172800.0s)
[2025-11-27 03:00:48] 2025-11-27 08:00:10,743 | INFO     | monitor loop #2004: job 0:6892534972 is in state 'finished'
[2025-11-27 03:00:48] 2025-11-27 08:00:10,743 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:00:48] 2025-11-27 08:00:11,876 | INFO     | time since job start (32787s) is within the limit (172800.0s)
[2025-11-27 03:00:48] 2025-11-27 08:00:13,249 | INFO     | monitor loop #2005: job 0:6892534972 is in state 'finished'
[2025-11-27 03:00:48] 2025-11-27 08:00:13,249 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:00:48] 2025-11-27 08:00:13,882 | INFO     | time since job start (32789s) is within the limit (172800.0s)
[2025-11-27 03:00:48] 2025-11-27 08:00:14,826 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 03:00:48] 2025-11-27 08:00:14,864 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3296.1207708333327
[2025-11-27 03:00:48] 2025-11-27 08:00:14,962 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6892534972/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:00:48] 2025-11-27 08:00:14,994 | INFO     | extracted standard info from prmon json
[2025-11-27 03:00:48] 2025-11-27 08:00:14,994 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:00:48] 2025-11-27 08:00:14,995 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:00:48] 2025-11-27 08:00:15,021 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:00:48] 2025-11-27 08:00:15,029 | INFO     | sum of square deviations: 48017293754.96458
[2025-11-27 03:00:48] 2025-11-27 08:00:15,035 | INFO     | sum of deviations: 1818074454007.5996
[2025-11-27 03:00:48] 2025-11-27 08:00:15,036 | INFO     | mean x: 1764214024.0968342
[2025-11-27 03:00:48] 2025-11-27 08:00:15,036 | INFO     | mean y: 3044767.411545624
[2025-11-27 03:00:48] 2025-11-27 08:00:15,036 | INFO     | intersect: -66795231390.76484
[2025-11-27 03:00:48] 2025-11-27 08:00:15,037 | INFO     | chi2: 10.547890988080841
[2025-11-27 03:00:48] 2025-11-27 08:00:15,037 | INFO     | sum of square deviations: 46688812247.7746
[2025-11-27 03:00:48] 2025-11-27 08:00:15,044 | INFO     | sum of deviations: 1999407657952.751
[2025-11-27 03:00:48] 2025-11-27 08:00:15,044 | INFO     | mean x: 1764213871.6165414
[2025-11-27 03:00:48] 2025-11-27 08:00:15,044 | INFO     | mean y: 3065557.2781954887
[2025-11-27 03:00:48] 2025-11-27 08:00:15,044 | INFO     | intersect: -75547854574.44385
[2025-11-27 03:00:48] 2025-11-27 08:00:15,045 | INFO     | chi2: 7.350220278203894
[2025-11-27 03:00:48] 2025-11-27 08:00:15,045 | INFO     | current chi2=7.350220278203894 (change=30.315735282914165 %)
[2025-11-27 03:00:48] 2025-11-27 08:00:15,045 | INFO     | sum of square deviations: 45384945839.225876
[2025-11-27 03:00:48] 2025-11-27 08:00:15,051 | INFO     | sum of deviations: 1938213073500.7083
[2025-11-27 03:00:48] 2025-11-27 08:00:15,051 | INFO     | mean x: 1764213719.1290324
[2025-11-27 03:00:48] 2025-11-27 08:00:15,051 | INFO     | mean y: 3058371.5483870967
[2025-11-27 03:00:48] 2025-11-27 08:00:15,052 | INFO     | intersect: -75339591743.71992
[2025-11-27 03:00:48] 2025-11-27 08:00:15,052 | INFO     | chi2: 7.188331554001897
[2025-11-27 03:00:48] 2025-11-27 08:00:15,052 | INFO     | current chi2=7.188331554001897 (change=2.2025016676310627 %)
[2025-11-27 03:00:48] 2025-11-27 08:00:15,052 | INFO     | right removable region: 526
[2025-11-27 03:00:48] 2025-11-27 08:00:15,053 | INFO     | sum of square deviations: 46688125387.77458
[2025-11-27 03:00:48] 2025-11-27 08:00:15,059 | INFO     | sum of deviations: 1656391949338.3618
[2025-11-27 03:00:48] 2025-11-27 08:00:15,059 | INFO     | mean x: 1764214176.6165414
[2025-11-27 03:00:48] 2025-11-27 08:00:15,059 | INFO     | mean y: 3063277.4135338347
[2025-11-27 03:00:48] 2025-11-27 08:00:15,059 | INFO     | intersect: -62587373472.51518
[2025-11-27 03:00:48] 2025-11-27 08:00:15,060 | INFO     | chi2: 8.281221775665857
[2025-11-27 03:00:48] 2025-11-27 08:00:15,060 | INFO     | current chi2=8.281221775665857 (change=21.489312081214422 %)
[2025-11-27 03:00:48] 2025-11-27 08:00:15,060 | INFO     | left removable region: 10
[2025-11-27 03:00:48] 2025-11-27 08:00:15,060 | INFO     | sum of square deviations: 42601308333.99235
[2025-11-27 03:00:48] 2025-11-27 08:00:15,063 | INFO     | sum of deviations: 1717884287652.7131
[2025-11-27 03:00:48] 2025-11-27 08:00:15,063 | INFO     | mean x: 1764213993.6705427
[2025-11-27 03:00:48] 2025-11-27 08:00:15,063 | INFO     | mean y: 3080061.810077519
[2025-11-27 03:00:48] 2025-11-27 08:00:15,063 | INFO     | intersect: -71138291372.67722
[2025-11-27 03:00:48] 2025-11-27 08:00:15,063 | INFO     | chi2: 4.820551564172788
[2025-11-27 03:00:48] 2025-11-27 08:00:15,064 | INFO     | current memory leak: 40.32 B/s (using 516 data points, chi2=4.82)
[2025-11-27 03:00:48] 2025-11-27 08:00:15,064 | INFO     | could have reported an average CPU frequency of 3288 MHz (21 samples)
[2025-11-27 03:00:48] 2025-11-27 08:00:15,064 | INFO     | ..............................
[2025-11-27 03:00:48] 2025-11-27 08:00:15,064 | INFO     | . Timing measurements:
[2025-11-27 03:00:48] 2025-11-27 08:00:15,064 | INFO     | . get job = 0 s
[2025-11-27 03:00:48] 2025-11-27 08:00:15,064 | INFO     | . initial setup = 2 s
[2025-11-27 03:00:48] 2025-11-27 08:00:15,064 | INFO     | . payload setup = 11 s
[2025-11-27 03:00:48] 2025-11-27 08:00:15,065 | INFO     | . stage-in = 0 s
[2025-11-27 03:00:48] 2025-11-27 08:00:15,065 | INFO     | . payload execution = 32736 s
[2025-11-27 03:00:48] 2025-11-27 08:00:15,065 | INFO     | . stage-out = 3 s
[2025-11-27 03:00:48] 2025-11-27 08:00:15,065 | INFO     | . log creation = 0 s
[2025-11-27 03:00:48] 2025-11-27 08:00:15,065 | INFO     | ..............................
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | 
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | job summary report
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | --------------------------------------------------
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | PanDA job id: 6892534972
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | task id: 47493029
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | errors: (none)
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | pilot state: finished 
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | transexitcode: 0
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | exeerrorcode: 0
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | exeerrordiag: 
[2025-11-27 03:00:48] 2025-11-27 08:00:15,127 | INFO     | exitcode: 0
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | exitmsg: OK
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | cpuconsumptiontime: 184649 s
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | nevents: 1000
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | neventsw: 0
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | pid: 3937458
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | pgrp: 3937458
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | corecount: 8
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | event service: False
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | sizes: {0: 2284304, 11: 2284594, 21: 2284594, 32748: 2325054, 32753: 2334104, 32761: 2334294}
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | --------------------------------------------------
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | 
[2025-11-27 03:00:48] 2025-11-27 08:00:15,128 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 03:00:48] 2025-11-27 08:00:15,153 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,153 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,153 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,153 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,153 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,153 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,153 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,153 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,153 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,153 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | job 6892534972 has completed (purged errors)
[2025-11-27 03:00:48] 2025-11-27 08:00:15,154 | INFO     | overall cleanup function is called
[2025-11-27 03:00:48] 2025-11-27 08:00:16,173 | INFO     | --- collectZombieJob: --- 10, [3937458]
[2025-11-27 03:00:48] 2025-11-27 08:00:16,174 | INFO     | zombie collector waiting for pid 3937458
[2025-11-27 03:00:48] 2025-11-27 08:00:16,174 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:00:48] 2025-11-27 08:00:16,174 | INFO     | collected zombie processes
[2025-11-27 03:00:48] 2025-11-27 08:00:16,174 | INFO     | will attempt to kill all subprocesses of pid=3937458
[2025-11-27 03:00:48] 2025-11-27 08:00:16,985 | INFO     | process IDs to be killed: [3937458] (in reverse order)
[2025-11-27 03:00:48] 2025-11-27 08:00:17,229 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:00:48] 2025-11-27 08:00:17,229 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:00:48] 2025-11-27 08:00:17,297 | INFO     | did not find any defunct processes belonging to 3937458
[2025-11-27 03:00:48] 2025-11-27 08:00:17,338 | INFO     | did not find any defunct processes belonging to 3937458
[2025-11-27 03:00:48] 2025-11-27 08:00:17,350 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:00:48] 2025-11-27 08:00:17,350 | INFO     | ready for new job
[2025-11-27 03:00:48] 2025-11-27 08:00:17,350 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:00:48] 2025-11-27 08:00:17,353 | INFO     | ***************************************
[2025-11-27 03:00:48] 2025-11-27 08:00:17,353 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:00:48] 2025-11-27 08:00:17,353 | INFO     | ***************************************
[2025-11-27 03:00:48] 2025-11-27 08:00:17,353 | INFO     | 
[2025-11-27 03:00:48] 2025-11-27 08:00:17,383 | INFO     | architecture information:
[2025-11-27 03:00:48] 2025-11-27 08:00:17,383 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:00:48] 2025-11-27 08:00:17,399 | INFO     | cat /etc/os-release:
[2025-11-27 03:00:48] NAME="CentOS Linux"
[2025-11-27 03:00:48] VERSION="7 (Core)"
[2025-11-27 03:00:48] ID="centos"
[2025-11-27 03:00:48] ID_LIKE="rhel fedora"
[2025-11-27 03:00:48] VERSION_ID="7"
[2025-11-27 03:00:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:00:48] ANSI_COLOR="0;31"
[2025-11-27 03:00:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:00:48] HOME_URL="https://www.centos.org/"
[2025-11-27 03:00:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:00:48] 
[2025-11-27 03:00:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:00:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:00:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:00:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:00:48] 
[2025-11-27 03:00:48] 2025-11-27 08:00:17,399 | INFO     | ***************************************
[2025-11-27 03:00:48] 2025-11-27 08:00:17,902 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 03:00:48] 2025-11-27 08:00:17,954 | INFO     | sufficient remaining disk space (65928167424 B)
[2025-11-27 03:00:48] 2025-11-27 08:00:17,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:00:48] 2025-11-27 08:00:17,955 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:00:48] 2025-11-27 08:00:17,955 | INFO     | update_server=False
[2025-11-27 03:00:48] 2025-11-27 08:00:17,955 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:00:48] 2025-11-27 08:00:17,955 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:00:48] 2025-11-27 08:00:17,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:00:48] 2025-11-27 08:00:18,082 | INFO     | all job control threads have been joined
[2025-11-27 03:00:48] 2025-11-27 08:00:18,086 | INFO     | all payload control threads have been joined
[2025-11-27 03:00:48] 2025-11-27 08:00:18,161 | INFO     | all data control threads have been joined
[2025-11-27 03:00:48] 2025-11-27 08:00:18,267 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 03:00:48] 2025-11-27 08:00:18,268 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 03:00:48] 2025-11-27 08:00:18,268 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:00:48] 2025-11-27 08:00:18,268 | INFO     | will abort loop
[2025-11-27 03:00:48] 2025-11-27 08:00:18,962 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:19,093 | INFO     | [payload] control thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:19,102 | INFO     | [job] control thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:19,167 | INFO     | [data] control thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:19,290 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:19,307 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:19,371 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:19,378 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:19,691 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:19,889 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:19,962 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:19,963 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:20,143 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:00:48] 2025-11-27 08:00:20,179 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:20,280 | INFO     | [job] validate thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:21,150 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:21,982 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:00:48] 2025-11-27 08:00:41,113 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:00:48] 2025-11-27 08:00:42,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140074814551872)>', '<ExcThread(monitor, started 140074175948544)>']
[2025-11-27 03:00:48] 2025-11-27 08:00:47,485 | INFO     | all workflow threads have been joined
[2025-11-27 03:00:48] 2025-11-27 08:00:47,487 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:00:48] 2025-11-27 08:00:47,487 | INFO     | traces error code: 0
[2025-11-27 03:00:48] 2025-11-27 08:00:47,488 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:00:48] 2025-11-27 08:00:47,881 | INFO     | PID=3916301 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 03:00:48] 2025-11-27 08:00:47,881 | INFO     | .. there are 90 such processes running
[2025-11-27 03:00:48] 2025-11-27 08:00:47,881 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:00:48] 2025-11-27 08:00:47,882 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:00:48] 2025-11-27 08:00:47,882 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:00:48] 2025-11-27 08:00:47,882 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:00:48] 2025-11-27 08:00:47,882 | INFO     | [monitor] control thread has ended
[2025-11-27 03:00:48] 2025-11-27 08:00:48,063 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:00:48] 2025-11-27 08:00:48,065 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:00:48] 2025-11-27 08:00:48,067 [wrapper] pilotpid: 3916301
[2025-11-27 03:00:48] 2025-11-27 08:00:48,070 [wrapper] Pilot exit status: 0
[2025-11-27 03:00:48] 2025-11-27 08:00:48,089 [wrapper] pandaids: 6892534972
[2025-11-27 03:00:48] 2025-11-27 08:00:48,261 [wrapper] cleanup supervisor_pilot   78569 3916302
[2025-11-27 03:00:48] 2025-11-27 08:00:48,264 [wrapper] Test setup, not cleaning
[2025-11-27 03:00:48] 2025-11-27 08:00:48,267 [wrapper] apfmon messages muted
[2025-11-27 03:00:48] 2025-11-27 08:00:48,270 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:00:48] 2025-11-27 08:00:48,274 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:00:48]  *** Error codes and diagnostics ***
[2025-11-27 03:00:48]     "exeErrorCode": 0,
[2025-11-27 03:00:48]     "exeErrorDiag": "",
[2025-11-27 03:00:48]     "pilotErrorCode": 0,
[2025-11-27 03:00:48]     "pilotErrorDiag": "",
[2025-11-27 03:00:48]  *** Listing of results directory ***
[2025-11-27 03:00:48] total 1311648
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 02:00 pilot3.tar.gz
[2025-11-27 03:00:48] -rwx------. 1 boincer umatlas     36292 Nov 19 02:27 runpilot2-wrapper.sh
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 02:27 queuedata.json
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas       100 Nov 26 17:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:00:48] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 17:53 run_atlas
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas       105 Nov 26 17:53 job.xml
[2025-11-27 03:00:48] -rw-r--r--. 2 boincer umatlas 409837633 Nov 26 17:53 EVNT.47493027._000189.pool.root.1
[2025-11-27 03:00:48] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 17:53 shared
[2025-11-27 03:00:48] -rw-r--r--. 2 boincer umatlas    590092 Nov 26 17:53 input.tar.gz
[2025-11-27 03:00:48] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 17:53 start_atlas.sh
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas         0 Nov 26 17:53 boinc_lockfile
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 17:53 pandaJob.out
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas    991546 Nov 26 17:53 agis_schedconf.cvmfs.json
[2025-11-27 03:00:48] drwx------. 5 boincer umatlas      4096 Nov 26 17:53 pilot3
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas       533 Nov 27 02:52 boinc_task_state.xml
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 02:58 init_data.xml
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas 917389836 Nov 27 02:59 HITS.47493029._001842.pool.root.1
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas      1075 Nov 27 03:00 memory_monitor_summary.json
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas        95 Nov 27 03:00 pilot_heartbeat.json
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas   1516240 Nov 27 03:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas   1801781 Nov 27 03:00 log.47493029._001842.job.log.tgz.1
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas      8653 Nov 27 03:00 heartbeat.json
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 03:00 boinc_mmap_file
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas        29 Nov 27 03:00 wrapper_checkpoint.txt
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas       824 Nov 27 03:00 pilotlog.txt
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas   4200723 Nov 27 03:00 log.47493029._001842.job.log.1
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas       353 Nov 27 03:00 output.list
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas       620 Nov 27 03:00 runtime_log
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas   6021120 Nov 27 03:00 result.tar.gz
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas       665 Nov 27 03:00 WaUMDmQmrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkoGKDmO7AQIo.diag
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas      8699 Nov 27 03:00 runtime_log.err
[2025-11-27 03:00:48] -rw-r--r--. 1 boincer umatlas      2076 Nov 27 03:00 stderr.txt
[2025-11-27 03:00:48] HITS file was successfully produced:
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas 917389836 Nov 27 02:59 shared/HITS.pool.root.1
[2025-11-27 03:00:48]  *** Contents of shared directory: ***
[2025-11-27 03:00:48] total 1302612
[2025-11-27 03:00:48] -rw-r--r--. 2 boincer umatlas 409837633 Nov 26 17:53 ATLAS.root_0
[2025-11-27 03:00:48] -rw-r--r--. 2 boincer umatlas    590092 Nov 26 17:53 input.tar.gz
[2025-11-27 03:00:48] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 17:53 start_atlas.sh
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas 917389836 Nov 27 02:59 HITS.pool.root.1
[2025-11-27 03:00:48] -rw-------. 1 boincer umatlas   6021120 Nov 27 03:00 result.tar.gz
03:00:50 (3898160): run_atlas exited; CPU time 185420.840594
03:00:50 (3898160): called boinc_finish(0)

</stderr_txt>
]]>

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